Wall clock time and date at job start Fri Apr 10 2020 18:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99972 * 2 1 4 4 C 1.46901 * 110.99728 * 123.95285 * 2 1 3 5 5 C 1.52996 * 109.47390 * 66.04915 * 4 2 1 6 6 C 1.53000 * 109.47123 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.47069 * 179.97438 * 6 5 4 8 8 C 1.34772 * 119.99990 * 179.97438 * 7 6 5 9 9 O 1.21359 * 120.00226 * 0.02562 * 8 7 6 10 10 C 1.49308 * 119.99928 * 179.97438 * 8 7 6 11 11 O 1.21403 * 119.99901 * 0.02562 * 10 8 7 12 12 N 1.34778 * 120.00276 * 180.02562 * 10 8 7 13 13 C 1.40286 * 120.00387 * 180.02562 * 12 10 8 14 14 C 1.40721 * 126.09820 * 359.95366 * 13 12 10 15 15 N 1.30877 * 108.37690 * 179.79326 * 14 13 12 16 16 N 1.40061 * 108.43327 * 0.38408 * 15 14 13 17 17 C 1.37293 * 126.05371 * 179.87288 * 16 15 14 18 18 H 1.07999 * 120.00325 * 173.76022 * 17 16 15 19 19 C 1.39009 * 120.00141 * 354.03938 * 17 16 15 20 20 N 1.31274 * 120.00094 * 5.58291 * 19 17 16 21 21 Si 1.86802 * 120.00082 * 185.57849 * 19 17 16 22 22 H 1.48497 * 109.47065 * 94.97773 * 21 19 17 23 23 H 1.48495 * 109.47224 * 214.98268 * 21 19 17 24 24 H 1.48506 * 109.47153 * 334.98084 * 21 19 17 25 25 C 1.35787 * 126.10217 * 180.02562 * 13 12 10 26 26 H 1.08998 * 109.46956 * 296.04659 * 1 2 3 27 27 H 1.08992 * 109.47245 * 56.04825 * 1 2 3 28 28 H 1.09001 * 109.46751 * 176.04869 * 1 2 3 29 29 H 1.08995 * 109.47196 * 183.95079 * 3 2 1 30 30 H 1.09007 * 109.47208 * 303.95406 * 3 2 1 31 31 H 1.08998 * 109.47200 * 63.95033 * 3 2 1 32 32 H 1.08998 * 109.47279 * 306.04589 * 4 2 1 33 33 H 1.09001 * 109.46965 * 186.04979 * 4 2 1 34 34 H 1.08998 * 109.47176 * 59.99610 * 5 4 2 35 35 H 1.09001 * 109.47119 * 299.99969 * 5 4 2 36 36 H 1.08998 * 109.47220 * 59.99873 * 6 5 4 37 37 H 1.08992 * 109.47177 * 299.99490 * 6 5 4 38 38 H 0.96997 * 119.99535 * 0.02562 * 7 6 5 39 39 H 0.97001 * 119.99593 * 0.02562 * 12 10 8 40 40 H 1.08006 * 125.81655 * 0.02562 * 14 13 12 41 41 H 0.96999 * 120.00193 * 180.02562 * 20 19 17 42 42 H 1.07997 * 126.25020 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 6 2.1803 -3.0404 2.1550 7 7 1.8313 -4.4543 1.9952 8 6 2.2136 -5.3520 2.9249 9 8 2.8465 -4.9891 3.8947 10 6 1.8574 -6.7928 2.7623 11 8 1.2238 -7.1557 1.7923 12 7 2.2392 -7.6905 3.6922 13 6 1.9050 -9.0444 3.5392 14 6 1.1784 -9.6034 2.4716 15 7 1.0706 -10.8917 2.6758 16 7 1.7132 -11.2045 3.8803 17 6 1.8157 -12.4537 4.4408 18 1 2.4200 -12.6016 5.3235 19 6 1.1464 -13.5293 3.8686 20 7 0.5063 -13.3752 2.7329 21 14 1.1577 -15.1941 4.7158 22 1 -0.0632 -15.3336 5.5494 23 1 1.1842 -16.2700 3.6926 24 1 2.3614 -15.3021 5.5788 25 6 2.2238 -10.0489 4.3954 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 0.5739 -0.8524 28 1 -0.3633 -1.0253 -0.0708 29 1 3.0827 1.3432 -0.0708 30 1 1.5898 1.9164 -0.8525 31 1 1.7044 1.8723 0.9232 32 1 1.5611 -0.3872 2.0628 33 1 3.0797 -0.6610 1.1757 34 1 2.0658 -2.6213 0.0452 35 1 0.5472 -2.3475 0.9323 36 1 1.7463 -2.6618 3.0804 37 1 3.2645 -2.9355 2.1926 38 1 1.3257 -4.7443 1.2198 39 1 2.7451 -7.4005 4.4674 40 1 0.7808 -9.0623 1.6257 41 1 0.0390 -14.1256 2.3338 42 1 2.7800 -9.9510 5.3160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319342912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:13 Heat of formation + Delta-G solvation = 20.610788 kcal Electronic energy + Delta-G solvation = -24133.474395 eV Core-core repulsion = 20343.970922 eV Total energy + Delta-G solvation = -3789.503473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49111 -39.51481 -38.30434 -37.82799 -35.60563 -34.27862 -33.18452 -31.85004 -30.32625 -28.14267 -28.01436 -26.99458 -25.25795 -23.96907 -22.51399 -21.42366 -21.02099 -20.17821 -19.46238 -18.16436 -17.44088 -16.55000 -16.39471 -15.87712 -15.61817 -15.51765 -15.18810 -14.99778 -14.79454 -14.71947 -14.04144 -13.78307 -13.52313 -13.13716 -12.98964 -12.84028 -12.72065 -12.34561 -12.17620 -11.86857 -11.76404 -11.74405 -11.56978 -11.31828 -11.21302 -11.10803 -10.85685 -10.54951 -10.28626 -9.31348 -9.23523 -9.13646 -8.87696 -8.81728 -8.12996 -6.78227 -6.61209 -4.28220 1.65326 2.56816 2.93138 3.03821 3.09008 3.32736 3.49210 3.71472 3.76388 3.98409 4.36811 4.48286 4.57971 4.64514 4.68528 4.83503 4.95064 4.96901 5.02754 5.05843 5.14140 5.16755 5.27893 5.37137 5.44554 5.52485 5.72986 5.80241 6.16166 6.19991 6.36076 6.55484 6.56508 6.75397 6.89093 6.91405 7.15986 7.21016 7.75921 7.85320 8.09787 8.18241 8.48414 8.69194 9.31176 9.59547 10.34888 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.049972 B = 0.001945 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.179210 B =14392.279025 C =14844.684810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.548 5.548 3 C 0.024 3.976 4 C 0.058 3.942 5 C -0.131 4.131 6 C 0.120 3.880 7 N -0.705 5.705 8 C 0.515 3.485 9 O -0.529 6.529 10 C 0.483 3.517 11 O -0.523 6.523 12 N -0.583 5.583 13 C -0.070 4.070 14 C -0.026 4.026 15 N -0.261 5.261 16 N -0.139 5.139 17 C -0.323 4.323 18 H 0.118 0.882 19 C 0.047 3.953 20 N -0.767 5.767 21 Si 0.936 3.064 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.076 4.076 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.025 0.975 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.414 0.586 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 22.251 -2.104 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.272 5.272 3 C -0.124 4.124 4 C -0.071 4.071 5 C -0.169 4.169 6 C -0.004 4.004 7 N -0.358 5.358 8 C 0.296 3.704 9 O -0.405 6.405 10 C 0.264 3.736 11 O -0.400 6.400 12 N -0.226 5.226 13 C -0.176 4.176 14 C -0.202 4.202 15 N -0.092 5.092 16 N 0.095 4.905 17 C -0.455 4.455 18 H 0.136 0.864 19 C -0.171 4.171 20 N -0.393 5.393 21 Si 0.760 3.240 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.228 4.228 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.244 0.756 40 H 0.195 0.805 41 H 0.086 0.914 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.400 20.803 -3.150 21.086 hybrid contribution 0.103 0.586 1.521 1.633 sum 1.503 21.389 -1.629 21.503 Atomic orbital electron populations 1.22475 0.87214 1.02723 1.00532 1.61955 1.08233 1.13925 1.43080 1.22387 1.00888 0.88603 1.00554 1.22024 1.00618 0.92921 0.91519 1.21809 1.02078 0.94337 0.98701 1.21352 1.00868 0.79520 0.98672 1.45685 1.56789 1.07497 1.25879 1.20286 0.79837 0.87308 0.82929 1.90730 1.38930 1.80888 1.29978 1.19644 0.83309 0.86076 0.84556 1.90656 1.39718 1.79529 1.30147 1.42144 1.51597 1.05511 1.23335 1.17259 1.15987 0.81970 1.02357 1.24147 1.03567 0.92380 1.00097 1.78256 1.19861 1.12064 0.99009 1.44562 1.29116 1.04663 1.12192 1.19937 1.32115 0.81591 1.11888 0.86414 1.25667 0.95249 1.00647 0.95513 1.70209 1.23636 1.32014 1.13486 0.85788 0.79407 0.79768 0.79071 1.19585 1.20054 1.18711 1.21311 1.12686 0.86400 1.02385 0.95551 0.91350 0.90824 0.91215 0.91273 0.95616 0.94346 0.90255 0.89918 0.90851 0.91175 0.90921 0.74926 0.75585 0.80546 0.91356 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.32 60.07 0.56 0.68 16 2 N -0.55 -3.91 5.02 -251.27 -1.26 -5.17 16 3 C 0.02 0.14 9.57 60.06 0.57 0.71 16 4 C 0.06 0.38 4.96 -3.83 -0.02 0.36 16 5 C -0.13 -0.92 5.25 -26.73 -0.14 -1.06 16 6 C 0.12 1.07 5.67 -4.04 -0.02 1.05 16 7 N -0.70 -8.18 5.55 -60.78 -0.34 -8.52 16 8 C 0.52 7.78 7.88 -11.65 -0.09 7.69 16 9 O -0.53 -8.75 16.47 5.49 0.09 -8.66 16 10 C 0.48 8.75 7.85 -11.65 -0.09 8.66 16 11 O -0.52 -10.54 13.62 5.45 0.07 -10.47 16 12 N -0.58 -11.05 5.45 -10.46 -0.06 -11.10 16 13 C -0.07 -1.62 6.90 -83.93 -0.58 -2.20 16 14 C -0.03 -0.68 10.84 -17.02 -0.18 -0.86 16 15 N -0.26 -7.50 10.41 30.81 0.32 -7.18 16 16 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 17 C -0.32 -8.46 10.24 -14.82 -0.15 -8.61 16 18 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 19 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 20 N -0.77 -21.16 11.83 55.50 0.66 -20.50 16 21 Si 0.94 18.70 29.56 -169.99 -5.02 13.67 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 25 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 26 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 28 H 0.07 0.45 6.47 -51.93 -0.34 0.12 16 29 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.50 6.55 -51.93 -0.34 0.16 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.41 4.45 7.94 -40.82 -0.32 4.12 16 39 H 0.41 6.68 8.29 -40.82 -0.34 6.34 16 40 H 0.18 4.44 5.92 -52.48 -0.31 4.13 16 41 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -32.83 359.08 -6.44 -39.27 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -5.84 Total: 11.53 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -0.43 Total: 5.53 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.72 Total: -56.28 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.16 Total: -19.13 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.83 -6.44 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319342912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.879 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds