Wall clock time and date at job start Fri Apr 10 2020 18:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99972 * 2 1 4 4 C 1.46901 * 110.99728 * 123.95285 * 2 1 3 5 5 C 1.52996 * 109.47390 * 66.04915 * 4 2 1 6 6 C 1.53000 * 109.47123 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.47069 * 179.97438 * 6 5 4 8 8 C 1.34772 * 119.99990 * 179.97438 * 7 6 5 9 9 O 1.21359 * 120.00226 * 0.02562 * 8 7 6 10 10 C 1.49308 * 119.99928 * 179.97438 * 8 7 6 11 11 O 1.21403 * 119.99901 * 0.02562 * 10 8 7 12 12 N 1.34778 * 120.00276 * 180.02562 * 10 8 7 13 13 C 1.40286 * 120.00387 * 180.02562 * 12 10 8 14 14 C 1.40721 * 126.09820 * 359.95366 * 13 12 10 15 15 N 1.30877 * 108.37690 * 179.79326 * 14 13 12 16 16 N 1.40061 * 108.43327 * 0.38408 * 15 14 13 17 17 C 1.37293 * 126.05371 * 179.87288 * 16 15 14 18 18 H 1.07999 * 120.00325 * 173.76022 * 17 16 15 19 19 C 1.39009 * 120.00141 * 354.03938 * 17 16 15 20 20 N 1.31274 * 120.00094 * 5.58291 * 19 17 16 21 21 Si 1.86802 * 120.00082 * 185.57849 * 19 17 16 22 22 H 1.48497 * 109.47065 * 94.97773 * 21 19 17 23 23 H 1.48495 * 109.47224 * 214.98268 * 21 19 17 24 24 H 1.48506 * 109.47153 * 334.98084 * 21 19 17 25 25 C 1.35787 * 126.10217 * 180.02562 * 13 12 10 26 26 H 1.08998 * 109.46956 * 296.04659 * 1 2 3 27 27 H 1.08992 * 109.47245 * 56.04825 * 1 2 3 28 28 H 1.09001 * 109.46751 * 176.04869 * 1 2 3 29 29 H 1.08995 * 109.47196 * 183.95079 * 3 2 1 30 30 H 1.09007 * 109.47208 * 303.95406 * 3 2 1 31 31 H 1.08998 * 109.47200 * 63.95033 * 3 2 1 32 32 H 1.08998 * 109.47279 * 306.04589 * 4 2 1 33 33 H 1.09001 * 109.46965 * 186.04979 * 4 2 1 34 34 H 1.08998 * 109.47176 * 59.99610 * 5 4 2 35 35 H 1.09001 * 109.47119 * 299.99969 * 5 4 2 36 36 H 1.08998 * 109.47220 * 59.99873 * 6 5 4 37 37 H 1.08992 * 109.47177 * 299.99490 * 6 5 4 38 38 H 0.96997 * 119.99535 * 0.02562 * 7 6 5 39 39 H 0.97001 * 119.99593 * 0.02562 * 12 10 8 40 40 H 1.08006 * 125.81655 * 0.02562 * 14 13 12 41 41 H 0.96999 * 120.00193 * 180.02562 * 20 19 17 42 42 H 1.07997 * 126.25020 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 6 2.1803 -3.0404 2.1550 7 7 1.8313 -4.4543 1.9952 8 6 2.2136 -5.3520 2.9249 9 8 2.8465 -4.9891 3.8947 10 6 1.8574 -6.7928 2.7623 11 8 1.2238 -7.1557 1.7923 12 7 2.2392 -7.6905 3.6922 13 6 1.9050 -9.0444 3.5392 14 6 1.1784 -9.6034 2.4716 15 7 1.0706 -10.8917 2.6758 16 7 1.7132 -11.2045 3.8803 17 6 1.8157 -12.4537 4.4408 18 1 2.4200 -12.6016 5.3235 19 6 1.1464 -13.5293 3.8686 20 7 0.5063 -13.3752 2.7329 21 14 1.1577 -15.1941 4.7158 22 1 -0.0632 -15.3336 5.5494 23 1 1.1842 -16.2700 3.6926 24 1 2.3614 -15.3021 5.5788 25 6 2.2238 -10.0489 4.3954 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 0.5739 -0.8524 28 1 -0.3633 -1.0253 -0.0708 29 1 3.0827 1.3432 -0.0708 30 1 1.5898 1.9164 -0.8525 31 1 1.7044 1.8723 0.9232 32 1 1.5611 -0.3872 2.0628 33 1 3.0797 -0.6610 1.1757 34 1 2.0658 -2.6213 0.0452 35 1 0.5472 -2.3475 0.9323 36 1 1.7463 -2.6618 3.0804 37 1 3.2645 -2.9355 2.1926 38 1 1.3257 -4.7443 1.2198 39 1 2.7451 -7.4005 4.4674 40 1 0.7808 -9.0623 1.6257 41 1 0.0390 -14.1256 2.3338 42 1 2.7800 -9.9510 5.3160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319342912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:12 Heat of formation + Delta-G solvation = -5.336661 kcal Electronic energy + Delta-G solvation = -24134.599561 eV Core-core repulsion = 20343.970922 eV Total energy + Delta-G solvation = -3790.628638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.01963 -41.16231 -39.49581 -38.68127 -36.67777 -35.86303 -34.96604 -32.64785 -32.28970 -29.91635 -28.47898 -27.95828 -26.91514 -25.20922 -23.39479 -22.85585 -22.11650 -21.53439 -21.15303 -19.63300 -19.12102 -17.71747 -17.45033 -17.24731 -16.79578 -16.72023 -16.58886 -15.92816 -15.72972 -15.59165 -15.51898 -15.21537 -14.92361 -14.79040 -14.58928 -13.52107 -13.45826 -13.38309 -13.30567 -13.01042 -12.94194 -12.87143 -12.68608 -12.54313 -12.34529 -12.28476 -12.06397 -11.96588 -11.68391 -11.07610 -10.86701 -10.58705 -10.30810 -10.13860 -9.31437 -8.62176 -8.49280 -6.26767 0.28841 1.29606 1.30380 1.42624 1.59509 1.72675 2.04538 2.12157 2.53763 2.57482 2.90557 3.06133 3.07133 3.53869 3.91858 4.02338 4.12063 4.32783 4.39982 4.46343 4.51777 4.52939 4.58866 4.66196 4.76232 4.78819 4.96173 4.98798 5.02112 5.03990 5.10145 5.14760 5.21772 5.27423 5.31021 5.90445 6.00008 6.07947 6.08742 6.25268 6.48820 6.67517 6.80336 7.07583 7.41593 7.62896 8.50276 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.049972 B = 0.001945 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.179210 B =14392.279025 C =14844.684810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.563 5.563 3 C 0.023 3.977 4 C 0.059 3.941 5 C -0.120 4.120 6 C 0.120 3.880 7 N -0.688 5.688 8 C 0.524 3.476 9 O -0.542 6.542 10 C 0.485 3.515 11 O -0.543 6.543 12 N -0.583 5.583 13 C -0.057 4.057 14 C -0.048 4.048 15 N -0.309 5.309 16 N -0.163 5.163 17 C -0.355 4.355 18 H 0.142 0.858 19 C -0.004 4.004 20 N -0.821 5.821 21 Si 1.020 2.980 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.243 1.243 25 C -0.074 4.074 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.420 0.580 39 H 0.423 0.577 40 H 0.176 0.824 41 H 0.278 0.722 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 23.395 -0.898 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.287 5.287 3 C -0.125 4.125 4 C -0.069 4.069 5 C -0.158 4.158 6 C -0.003 4.003 7 N -0.341 5.341 8 C 0.304 3.696 9 O -0.419 6.419 10 C 0.267 3.733 11 O -0.422 6.422 12 N -0.227 5.227 13 C -0.164 4.164 14 C -0.223 4.223 15 N -0.140 5.140 16 N 0.069 4.931 17 C -0.486 4.486 18 H 0.159 0.841 19 C -0.216 4.216 20 N -0.448 5.448 21 Si 0.838 3.162 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.166 1.166 25 C -0.225 4.225 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.257 0.743 39 H 0.261 0.739 40 H 0.193 0.807 41 H 0.088 0.912 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.248 22.016 -1.950 22.216 hybrid contribution -0.141 0.468 1.079 1.185 sum 2.106 22.484 -0.871 22.599 Atomic orbital electron populations 1.22494 0.86897 1.02784 1.00849 1.61965 1.08695 1.14742 1.43301 1.22419 1.01137 0.87995 1.00927 1.22001 1.00958 0.92378 0.91601 1.21705 1.02133 0.94390 0.97598 1.21539 1.01279 0.77724 0.99745 1.45725 1.55323 1.08172 1.24857 1.19622 0.80307 0.86044 0.83582 1.90736 1.39916 1.80593 1.30681 1.20302 0.81958 0.87416 0.83602 1.90648 1.40271 1.80315 1.30921 1.42086 1.52254 1.03989 1.24409 1.17303 1.14271 0.83844 1.00954 1.24255 1.04715 0.92204 1.01143 1.78151 1.21644 1.13485 1.00756 1.44838 1.30115 1.05938 1.12256 1.20669 1.33157 0.81864 1.12895 0.84097 1.26882 0.94061 1.04880 0.95815 1.70374 1.25294 1.33512 1.15660 0.84569 0.80071 0.73710 0.77813 1.19154 1.20056 1.16626 1.22012 1.11669 0.85440 1.03339 0.95418 0.90854 0.90934 0.90842 0.90763 0.95363 0.94080 0.89780 0.90115 0.90514 0.90768 0.90511 0.74299 0.73886 0.80709 0.91220 0.79465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.32 127.69 1.19 1.39 16 2 N -0.56 -7.08 5.02 -948.86 -4.76 -11.84 16 3 C 0.02 0.23 9.57 127.69 1.22 1.45 16 4 C 0.06 0.67 4.96 86.30 0.43 1.10 16 5 C -0.12 -1.45 5.25 30.59 0.16 -1.29 16 6 C 0.12 1.89 5.67 86.38 0.49 2.38 16 7 N -0.69 -14.68 5.55 -464.57 -2.58 -17.26 16 8 C 0.52 14.95 7.88 87.23 0.69 15.64 16 9 O -0.54 -16.80 16.47 -3.27 -0.05 -16.85 16 10 C 0.49 17.12 7.85 87.23 0.69 17.80 16 11 O -0.54 -21.81 13.62 -3.41 -0.05 -21.86 16 12 N -0.58 -21.43 5.45 -305.33 -1.66 -23.09 16 13 C -0.06 -2.65 6.90 37.83 0.26 -2.39 16 14 C -0.05 -2.54 10.84 85.44 0.93 -1.61 16 15 N -0.31 -18.32 10.41 -56.43 -0.59 -18.91 16 16 N -0.16 -9.00 3.73 -189.98 -0.71 -9.71 16 17 C -0.35 -18.61 10.24 84.02 0.86 -17.75 16 18 H 0.14 6.41 7.84 -2.91 -0.02 6.39 16 19 C 0.00 -0.21 5.50 84.96 0.47 0.25 16 20 N -0.82 -46.70 11.83 21.66 0.26 -46.44 16 21 Si 1.02 38.09 29.56 68.60 2.03 40.12 16 22 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 23 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 24 H -0.24 -8.21 7.11 99.48 0.71 -7.51 16 25 C -0.07 -3.42 11.50 83.41 0.96 -2.46 16 26 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.07 0.71 8.12 -2.39 -0.02 0.70 16 28 H 0.07 0.79 6.47 -2.39 -0.02 0.78 16 29 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 30 H 0.07 0.64 8.12 -2.38 -0.02 0.62 16 31 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.04 0.45 8.12 -2.39 -0.02 0.43 16 33 H 0.08 0.87 8.06 -2.39 -0.02 0.85 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.08 0.90 6.55 -2.39 -0.02 0.88 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.42 8.31 7.94 -92.71 -0.74 7.57 16 39 H 0.42 13.06 8.29 -92.71 -0.77 12.29 16 40 H 0.18 9.12 5.92 -2.91 -0.02 9.10 16 41 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.19 6.93 8.06 -2.91 -0.02 6.91 16 Total: -1.00 -72.30 359.08 -0.22 -72.52 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: -0.44 Total: 38.81 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 8.34 Total: 14.51 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -10.04 Total: -127.25 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.10 Total: -38.71 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -72.30 -0.22 -72.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319342912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.184 kcal (2) G-P(sol) polarization free energy of solvation -72.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds