Wall clock time and date at job start Fri Apr 10 2020 18:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46818 * 2 1 4 4 C 1.52997 * 109.46806 * 239.99558 * 2 1 3 5 5 N 1.46504 * 109.47553 * 294.45974 * 4 2 1 6 6 C 1.34773 * 119.99962 * 175.26280 * 5 4 2 7 7 O 1.21372 * 119.99966 * 0.28462 * 6 5 4 8 8 C 1.49310 * 119.99840 * 180.27800 * 6 5 4 9 9 O 1.21402 * 120.00128 * 0.02562 * 8 6 5 10 10 N 1.34773 * 119.99879 * 180.02562 * 8 6 5 11 11 C 1.40292 * 119.99967 * 179.97438 * 10 8 6 12 12 C 1.40718 * 126.10003 * 359.69574 * 11 10 8 13 13 N 1.30882 * 108.37891 * 179.81165 * 12 11 10 14 14 N 1.40066 * 108.43031 * 0.43938 * 13 12 11 15 15 C 1.37294 * 126.05155 * 179.69488 * 14 13 12 16 16 H 1.07994 * 119.99899 * 180.02562 * 15 14 13 17 17 C 1.39010 * 120.00017 * 0.02562 * 15 14 13 18 18 N 1.31274 * 120.00137 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99804 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47121 * 60.00047 * 19 17 15 21 21 H 1.48494 * 109.46863 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46997 * 300.00229 * 19 17 15 23 23 C 1.35786 * 126.10049 * 179.97438 * 11 10 8 24 24 N 1.46903 * 109.46828 * 120.00062 * 2 1 3 25 25 C 1.46897 * 110.99445 * 178.08626 * 24 2 1 26 26 C 1.46904 * 110.99699 * 302.03686 * 24 2 1 27 27 H 1.08998 * 109.47213 * 300.00172 * 1 2 3 28 28 H 1.09002 * 109.47291 * 60.00303 * 1 2 3 29 29 H 1.09001 * 109.47495 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46890 * 174.46161 * 4 2 1 31 31 H 1.09002 * 109.47271 * 54.46126 * 4 2 1 32 32 H 0.97001 * 119.99697 * 355.54583 * 5 4 2 33 33 H 0.97001 * 120.00241 * 0.02562 * 10 8 6 34 34 H 1.07997 * 125.81240 * 359.96860 * 12 11 10 35 35 H 0.97001 * 120.00514 * 179.97438 * 18 17 15 36 36 H 1.08006 * 126.25514 * 359.96482 * 23 11 10 37 37 H 1.09000 * 109.47534 * 53.36317 * 25 24 2 38 38 H 1.09001 * 109.47012 * 173.35946 * 25 24 2 39 39 H 1.09000 * 109.47482 * 293.35900 * 25 24 2 40 40 H 1.08995 * 109.47028 * 60.00876 * 26 24 2 41 41 H 1.09002 * 109.46874 * 180.02562 * 26 24 2 42 42 H 1.09004 * 109.47002 * 300.00406 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6635 -2.1357 -1.1843 6 6 1.9245 -2.9509 -2.2254 7 8 2.4761 -2.5144 -3.2145 8 6 1.5353 -4.3910 -2.1617 9 8 0.9833 -4.8275 -1.1725 10 7 1.7968 -5.2063 -3.2025 11 6 1.4316 -6.5595 -3.1425 12 6 0.7955 -7.1995 -2.0628 13 7 0.6145 -8.4571 -2.3770 14 7 1.1343 -8.6723 -3.6597 15 6 1.1403 -9.8651 -4.3395 16 1 1.5693 -9.9205 -5.3290 17 6 0.5943 -11.0015 -3.7540 18 7 0.0723 -10.9341 -2.5514 19 14 0.6019 -12.6243 -4.6793 20 1 2.0022 -13.0146 -4.9826 21 1 -0.0350 -13.6736 -3.8435 22 1 -0.1560 -12.4746 -5.9475 23 6 1.6335 -7.4865 -4.1140 24 7 2.0196 -0.6925 1.1995 25 6 3.4873 -0.7519 1.2107 26 6 1.5091 -0.0551 2.4206 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1254 -0.6363 -1.3002 31 1 1.5978 -0.2680 -2.1364 32 1 1.2227 -2.4845 -0.3938 33 1 2.2382 -4.8577 -3.9928 34 1 0.5038 -6.7320 -1.1340 35 1 -0.3091 -11.7269 -2.1430 36 1 2.1032 -7.3163 -5.0716 37 1 3.8926 0.2519 1.0831 38 1 3.8271 -1.1627 2.1614 39 1 3.8315 -1.3890 0.3959 40 1 0.4196 -0.0871 2.4189 41 1 1.8872 -0.5872 3.2935 42 1 1.8421 0.9823 2.4554 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319960924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:16 Heat of formation + Delta-G solvation = 28.705603 kcal Electronic energy + Delta-G solvation = -25086.706304 eV Core-core repulsion = 21297.553849 eV Total energy + Delta-G solvation = -3789.152455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48019 -39.57677 -38.65525 -37.67845 -34.90847 -34.03537 -33.11761 -31.44878 -30.29092 -28.75928 -27.98471 -26.37452 -25.19286 -24.42721 -23.36776 -21.03793 -20.38385 -20.09588 -19.42460 -18.15498 -17.41185 -16.70424 -16.17596 -15.61153 -15.48801 -15.34930 -15.18547 -14.91076 -14.70849 -14.11836 -13.97809 -13.67842 -13.45250 -13.14743 -12.94479 -12.75413 -12.65799 -12.57984 -12.04888 -11.72715 -11.70886 -11.61493 -11.52464 -11.25098 -11.18936 -11.11136 -10.82854 -10.56391 -10.23789 -9.19850 -9.16772 -9.06655 -8.84029 -8.71675 -8.09548 -6.73882 -6.57642 -4.24807 1.74269 2.68854 2.96563 3.05306 3.08940 3.38318 3.52645 3.76717 3.80272 4.10423 4.34748 4.41420 4.57139 4.68372 4.83725 4.90701 5.00806 5.03969 5.08318 5.23215 5.24311 5.34848 5.43784 5.45498 5.47794 5.64158 5.69893 5.93327 6.23481 6.26313 6.40079 6.65256 6.67085 6.80543 6.91821 6.98185 7.19506 7.36499 7.81532 7.94498 8.17325 8.22455 8.54168 8.73885 9.34475 9.63302 10.38128 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.032678 B = 0.002467 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.642540 B =11345.979863 C =11765.121744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 H 0.058 0.942 4 C 0.125 3.875 5 N -0.690 5.690 6 C 0.512 3.488 7 O -0.535 6.535 8 C 0.484 3.516 9 O -0.521 6.521 10 N -0.585 5.585 11 C -0.068 4.068 12 C -0.027 4.027 13 N -0.261 5.261 14 N -0.139 5.139 15 C -0.322 4.322 16 H 0.117 0.883 17 C 0.046 3.954 18 N -0.768 5.768 19 Si 0.936 3.064 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.078 4.078 24 N -0.542 5.542 25 C 0.020 3.980 26 C 0.022 3.978 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.421 0.579 33 H 0.409 0.591 34 H 0.178 0.822 35 H 0.276 0.724 36 H 0.149 0.851 37 H 0.026 0.974 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 19.820 4.957 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.042 4.042 3 H 0.076 0.924 4 C 0.001 3.999 5 N -0.345 5.345 6 C 0.293 3.707 7 O -0.412 6.412 8 C 0.265 3.735 9 O -0.398 6.398 10 N -0.228 5.228 11 C -0.174 4.174 12 C -0.203 4.203 13 N -0.091 5.091 14 N 0.094 4.906 15 C -0.455 4.455 16 H 0.135 0.865 17 C -0.171 4.171 18 N -0.394 5.394 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.230 4.230 24 N -0.267 5.267 25 C -0.128 4.128 26 C -0.126 4.126 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.260 0.740 33 H 0.243 0.757 34 H 0.195 0.805 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.045 0.955 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.560 18.077 5.523 19.074 hybrid contribution 0.781 1.055 -0.724 1.499 sum 3.341 19.132 4.799 20.006 Atomic orbital electron populations 1.21945 0.93401 1.03433 1.02147 1.21981 0.96645 0.95779 0.89769 0.92435 1.21473 1.00285 0.80892 0.97285 1.45595 1.60385 1.08978 1.19554 1.20298 0.79560 0.87498 0.83309 1.90724 1.41775 1.77008 1.31715 1.19669 0.82985 0.86402 0.84461 1.90660 1.41985 1.75688 1.31449 1.42149 1.55502 1.07416 1.17759 1.17253 1.17919 0.82930 0.99258 1.24154 1.04333 0.92063 0.99737 1.78261 1.21703 1.14342 0.94827 1.44550 1.31009 1.05263 1.09755 1.19864 1.41318 0.83366 1.00905 0.86522 1.25658 0.95248 1.00326 0.95882 1.70194 1.27132 1.30088 1.12021 0.85878 0.79260 0.79629 0.79297 1.19112 1.20116 1.19118 1.21305 1.14007 0.87046 1.00604 1.61972 1.09702 1.53057 1.01966 1.22455 0.86849 1.00158 1.03304 1.22454 1.01367 0.96645 0.92138 0.92035 0.91723 0.91139 0.91277 0.90353 0.74025 0.75658 0.80533 0.91325 0.83385 0.95542 0.91159 0.90863 0.90761 0.91161 0.95743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.77 37.16 0.33 -0.77 16 2 C 0.07 0.51 2.32 -67.71 -0.16 0.35 16 3 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 4 C 0.12 1.19 4.68 -4.04 -0.02 1.17 16 5 N -0.69 -8.50 5.08 -60.77 -0.31 -8.81 16 6 C 0.51 7.94 7.88 -11.65 -0.09 7.84 16 7 O -0.54 -8.97 16.47 5.48 0.09 -8.88 16 8 C 0.48 8.97 7.85 -11.65 -0.09 8.88 16 9 O -0.52 -10.78 13.62 5.45 0.07 -10.71 16 10 N -0.59 -11.28 5.45 -10.46 -0.06 -11.34 16 11 C -0.07 -1.59 6.90 -83.93 -0.58 -2.17 16 12 C -0.03 -0.71 10.84 -17.02 -0.18 -0.90 16 13 N -0.26 -7.54 10.39 30.81 0.32 -7.22 16 14 N -0.14 -3.81 3.73 -11.40 -0.04 -3.85 16 15 C -0.32 -8.49 10.25 -14.82 -0.15 -8.64 16 16 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 18 N -0.77 -21.32 11.81 55.50 0.66 -20.66 16 19 Si 0.94 18.81 29.55 -169.99 -5.02 13.79 16 20 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 23 C -0.08 -1.86 11.50 -16.38 -0.19 -2.05 16 24 N -0.54 -4.49 4.24 -243.18 -1.03 -5.52 16 25 C 0.02 0.16 9.02 60.06 0.54 0.70 16 26 C 0.02 0.15 9.15 60.07 0.55 0.70 16 27 H 0.06 0.38 6.37 -51.93 -0.33 0.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.62 7.32 -51.93 -0.38 0.24 16 30 H 0.07 0.66 6.85 -51.93 -0.36 0.31 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.42 5.29 6.89 -40.82 -0.28 5.01 16 33 H 0.41 6.81 8.29 -40.82 -0.34 6.47 16 34 H 0.18 4.51 5.92 -52.49 -0.31 4.20 16 35 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.15 2.96 8.06 -52.48 -0.42 2.53 16 37 H 0.03 0.18 8.12 -51.93 -0.42 -0.24 16 38 H 0.07 0.52 8.00 -51.93 -0.42 0.10 16 39 H 0.07 0.66 6.78 -51.93 -0.35 0.31 16 40 H 0.07 0.47 6.26 -51.93 -0.33 0.15 16 41 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 42 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -32.47 351.93 -5.75 -38.22 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.59 Total: 13.47 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.14 Total: 6.21 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.46 Total: -57.40 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.16 Total: -19.59 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.47 -5.75 -38.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319960924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.926 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds