Wall clock time and date at job start Fri Apr 10 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46818 * 2 1 4 4 C 1.52997 * 109.46806 * 239.99558 * 2 1 3 5 5 N 1.46504 * 109.47553 * 294.45974 * 4 2 1 6 6 C 1.34773 * 119.99962 * 175.26280 * 5 4 2 7 7 O 1.21372 * 119.99966 * 0.28462 * 6 5 4 8 8 C 1.49310 * 119.99840 * 180.27800 * 6 5 4 9 9 O 1.21402 * 120.00128 * 0.02562 * 8 6 5 10 10 N 1.34773 * 119.99879 * 180.02562 * 8 6 5 11 11 C 1.40292 * 119.99967 * 179.97438 * 10 8 6 12 12 C 1.40718 * 126.10003 * 359.69574 * 11 10 8 13 13 N 1.30882 * 108.37891 * 179.81165 * 12 11 10 14 14 N 1.40066 * 108.43031 * 0.43938 * 13 12 11 15 15 C 1.37294 * 126.05155 * 179.69488 * 14 13 12 16 16 H 1.07994 * 119.99899 * 180.02562 * 15 14 13 17 17 C 1.39010 * 120.00017 * 0.02562 * 15 14 13 18 18 N 1.31274 * 120.00137 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99804 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47121 * 60.00047 * 19 17 15 21 21 H 1.48494 * 109.46863 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46997 * 300.00229 * 19 17 15 23 23 C 1.35786 * 126.10049 * 179.97438 * 11 10 8 24 24 N 1.46903 * 109.46828 * 120.00062 * 2 1 3 25 25 C 1.46897 * 110.99445 * 178.08626 * 24 2 1 26 26 C 1.46904 * 110.99699 * 302.03686 * 24 2 1 27 27 H 1.08998 * 109.47213 * 300.00172 * 1 2 3 28 28 H 1.09002 * 109.47291 * 60.00303 * 1 2 3 29 29 H 1.09001 * 109.47495 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46890 * 174.46161 * 4 2 1 31 31 H 1.09002 * 109.47271 * 54.46126 * 4 2 1 32 32 H 0.97001 * 119.99697 * 355.54583 * 5 4 2 33 33 H 0.97001 * 120.00241 * 0.02562 * 10 8 6 34 34 H 1.07997 * 125.81240 * 359.96860 * 12 11 10 35 35 H 0.97001 * 120.00514 * 179.97438 * 18 17 15 36 36 H 1.08006 * 126.25514 * 359.96482 * 23 11 10 37 37 H 1.09000 * 109.47534 * 53.36317 * 25 24 2 38 38 H 1.09001 * 109.47012 * 173.35946 * 25 24 2 39 39 H 1.09000 * 109.47482 * 293.35900 * 25 24 2 40 40 H 1.08995 * 109.47028 * 60.00876 * 26 24 2 41 41 H 1.09002 * 109.46874 * 180.02562 * 26 24 2 42 42 H 1.09004 * 109.47002 * 300.00406 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6635 -2.1357 -1.1843 6 6 1.9245 -2.9509 -2.2254 7 8 2.4761 -2.5144 -3.2145 8 6 1.5353 -4.3910 -2.1617 9 8 0.9833 -4.8275 -1.1725 10 7 1.7968 -5.2063 -3.2025 11 6 1.4316 -6.5595 -3.1425 12 6 0.7955 -7.1995 -2.0628 13 7 0.6145 -8.4571 -2.3770 14 7 1.1343 -8.6723 -3.6597 15 6 1.1403 -9.8651 -4.3395 16 1 1.5693 -9.9205 -5.3290 17 6 0.5943 -11.0015 -3.7540 18 7 0.0723 -10.9341 -2.5514 19 14 0.6019 -12.6243 -4.6793 20 1 2.0022 -13.0146 -4.9826 21 1 -0.0350 -13.6736 -3.8435 22 1 -0.1560 -12.4746 -5.9475 23 6 1.6335 -7.4865 -4.1140 24 7 2.0196 -0.6925 1.1995 25 6 3.4873 -0.7519 1.2107 26 6 1.5091 -0.0551 2.4206 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1254 -0.6363 -1.3002 31 1 1.5978 -0.2680 -2.1364 32 1 1.2227 -2.4845 -0.3938 33 1 2.2382 -4.8577 -3.9928 34 1 0.5038 -6.7320 -1.1340 35 1 -0.3091 -11.7269 -2.1430 36 1 2.1032 -7.3163 -5.0716 37 1 3.8926 0.2519 1.0831 38 1 3.8271 -1.1627 2.1614 39 1 3.8315 -1.3890 0.3959 40 1 0.4196 -0.0871 2.4189 41 1 1.8872 -0.5872 3.2935 42 1 1.8421 0.9823 2.4554 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319960924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:15 Heat of formation + Delta-G solvation = 3.466895 kcal Electronic energy + Delta-G solvation = -25087.800737 eV Core-core repulsion = 21297.553849 eV Total energy + Delta-G solvation = -3790.246888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.00365 -41.18750 -39.74782 -38.92161 -36.29753 -35.45689 -34.85707 -32.29618 -32.17752 -29.94254 -29.33688 -27.44796 -26.71302 -25.35375 -24.52142 -22.89543 -21.80507 -21.21296 -20.88095 -19.63667 -19.13386 -17.74207 -17.43777 -17.23429 -16.80615 -16.76768 -16.23051 -15.85659 -15.76677 -15.49730 -15.46963 -14.91793 -14.86094 -14.72767 -14.38229 -13.64120 -13.49883 -13.36396 -13.23323 -13.18475 -12.94888 -12.87445 -12.64363 -12.47639 -12.32683 -12.22827 -12.12538 -11.94187 -11.74039 -11.04102 -10.85951 -10.54912 -10.22013 -10.12672 -9.30270 -8.60546 -8.47564 -6.25362 0.33551 1.31906 1.35331 1.43895 1.58007 1.74492 2.07499 2.13659 2.56160 2.61277 2.89692 3.07440 3.08813 3.59508 3.67742 3.94106 4.26286 4.31284 4.41103 4.49651 4.53910 4.58670 4.64143 4.71932 4.77605 4.88404 4.90933 4.97325 4.99672 5.06222 5.11493 5.21787 5.23920 5.32611 5.35888 5.91831 6.03938 6.07613 6.10695 6.27978 6.53321 6.69147 6.86269 7.11329 7.42618 7.64111 8.51462 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.032678 B = 0.002467 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.642540 B =11345.979863 C =11765.121744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.077 0.923 4 C 0.122 3.878 5 N -0.673 5.673 6 C 0.522 3.478 7 O -0.546 6.546 8 C 0.485 3.515 9 O -0.543 6.543 10 N -0.584 5.584 11 C -0.055 4.055 12 C -0.049 4.049 13 N -0.308 5.308 14 N -0.163 5.163 15 C -0.354 4.354 16 H 0.142 0.858 17 C -0.005 4.005 18 N -0.821 5.821 19 Si 1.020 2.980 20 H -0.254 1.254 21 H -0.277 1.277 22 H -0.254 1.254 23 C -0.076 4.076 24 N -0.560 5.560 25 C 0.022 3.978 26 C 0.023 3.977 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.421 0.579 33 H 0.423 0.577 34 H 0.175 0.825 35 H 0.278 0.722 36 H 0.188 0.812 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 21.259 3.857 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.035 4.035 3 H 0.095 0.905 4 C -0.002 4.002 5 N -0.326 5.326 6 C 0.302 3.698 7 O -0.424 6.424 8 C 0.267 3.733 9 O -0.421 6.421 10 N -0.229 5.229 11 C -0.162 4.162 12 C -0.225 4.225 13 N -0.139 5.139 14 N 0.069 4.931 15 C -0.485 4.485 16 H 0.159 0.841 17 C -0.217 4.217 18 N -0.449 5.449 19 Si 0.838 3.162 20 H -0.178 1.178 21 H -0.202 1.202 22 H -0.178 1.178 23 C -0.227 4.227 24 N -0.286 5.286 25 C -0.126 4.126 26 C -0.125 4.125 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.260 0.740 33 H 0.260 0.740 34 H 0.192 0.808 35 H 0.088 0.912 36 H 0.205 0.795 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.317 19.585 4.428 20.352 hybrid contribution 0.574 0.821 -0.301 1.046 sum 3.891 20.407 4.128 21.180 Atomic orbital electron populations 1.21939 0.93107 1.02518 1.03200 1.21958 0.96765 0.96226 0.88583 0.90496 1.21732 1.00690 0.78942 0.98795 1.45623 1.58789 1.09915 1.18310 1.19629 0.80054 0.86106 0.84056 1.90729 1.42741 1.76681 1.32270 1.20341 0.81627 0.87750 0.83582 1.90651 1.42599 1.76541 1.32286 1.42090 1.56008 1.05915 1.18847 1.17296 1.16213 0.84665 0.97996 1.24246 1.05512 0.92068 1.00635 1.78159 1.23465 1.15758 0.96548 1.44836 1.32049 1.06614 1.09622 1.20618 1.42154 0.83645 1.02074 0.84106 1.26890 0.93971 1.04329 0.96545 1.70369 1.28835 1.31370 1.14292 0.84642 0.79850 0.73829 0.77835 1.17752 1.20206 1.17757 1.22003 1.12798 0.85994 1.01893 1.61961 1.09946 1.53930 1.02734 1.22413 0.86812 1.00560 1.02804 1.22460 1.01496 0.97108 0.91390 0.90829 0.90920 0.92972 0.90896 0.89672 0.74027 0.73956 0.80815 0.91236 0.79494 0.94308 0.91021 0.92335 0.90485 0.91221 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.77 71.98 0.63 -1.24 16 2 C 0.07 0.95 2.32 44.91 0.10 1.05 16 3 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 4 C 0.12 2.07 4.68 86.38 0.40 2.48 16 5 N -0.67 -15.74 5.08 -464.54 -2.36 -18.10 16 6 C 0.52 15.54 7.88 87.23 0.69 16.23 16 7 O -0.55 -17.36 16.47 -3.31 -0.05 -17.41 16 8 C 0.49 17.76 7.85 87.23 0.69 18.44 16 9 O -0.54 -22.69 13.62 -3.41 -0.05 -22.74 16 10 N -0.58 -22.03 5.45 -305.34 -1.66 -23.70 16 11 C -0.06 -2.60 6.90 37.82 0.26 -2.34 16 12 C -0.05 -2.66 10.84 85.44 0.93 -1.74 16 13 N -0.31 -18.44 10.39 -56.44 -0.59 -19.03 16 14 N -0.16 -9.07 3.73 -189.98 -0.71 -9.78 16 15 C -0.35 -18.68 10.25 84.02 0.86 -17.82 16 16 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 17 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 18 N -0.82 -47.02 11.81 21.66 0.26 -46.76 16 19 Si 1.02 38.31 29.55 68.60 2.03 40.34 16 20 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 21 H -0.28 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 23 C -0.08 -3.58 11.50 83.41 0.96 -2.62 16 24 N -0.56 -8.31 4.24 -923.28 -3.92 -12.22 16 25 C 0.02 0.31 9.02 127.69 1.15 1.47 16 26 C 0.02 0.27 9.15 127.69 1.17 1.43 16 27 H 0.07 0.75 6.37 -2.39 -0.02 0.73 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.85 7.32 -2.39 -0.02 0.83 16 30 H 0.07 1.25 6.85 -2.39 -0.02 1.23 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.42 10.23 6.89 -92.71 -0.64 9.59 16 33 H 0.42 13.45 8.29 -92.71 -0.77 12.68 16 34 H 0.18 9.27 5.92 -2.91 -0.02 9.25 16 35 H 0.28 14.63 8.31 -92.71 -0.77 13.85 16 36 H 0.19 7.04 8.06 -2.91 -0.02 7.01 16 37 H 0.04 0.45 8.12 -2.39 -0.02 0.43 16 38 H 0.07 0.98 8.00 -2.39 -0.02 0.96 16 39 H 0.06 0.99 6.78 -2.39 -0.02 0.98 16 40 H 0.08 0.83 6.26 -2.39 -0.01 0.82 16 41 H 0.07 0.81 8.05 -2.39 -0.02 0.79 16 42 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -72.03 351.93 0.92 -71.11 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: -0.34 Total: 42.76 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 8.31 Total: 15.54 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -8.98 Total: -129.60 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.10 Total: -40.15 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -72.03 0.92 -71.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319960924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.580 kcal (2) G-P(sol) polarization free energy of solvation -72.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds