Wall clock time and date at job start Fri Apr 10 2020 18:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 110.99612 * 2 1 4 4 C 1.46904 * 111.00022 * 123.95272 * 2 1 3 5 5 C 1.53000 * 109.46976 * 170.00277 * 4 2 1 6 6 N 1.46498 * 109.46743 * 179.97438 * 5 4 2 7 7 C 1.34993 * 125.96688 * 125.00303 * 6 5 4 8 8 C 1.35215 * 107.87565 * 180.02562 * 7 6 5 9 9 C 1.40462 * 107.86762 * 0.02562 * 8 7 6 10 10 N 1.39933 * 125.98431 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99680 * 359.97438 * 10 9 8 12 12 O 1.21384 * 119.99843 * 359.97438 * 11 10 9 13 13 C 1.49335 * 119.99853 * 180.02562 * 11 10 9 14 14 O 1.21362 * 120.00365 * 359.97438 * 13 11 10 15 15 N 1.34778 * 120.00275 * 179.97438 * 13 11 10 16 16 C 1.46497 * 120.00682 * 179.97438 * 15 13 11 17 17 C 1.50690 * 109.47638 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00163 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00310 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00108 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99986 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47127 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47139 * 120.00059 * 21 19 17 24 24 H 1.48500 * 109.46735 * 239.99631 * 21 19 17 25 25 N 1.31274 * 108.03750 * 359.97438 * 9 8 7 26 26 H 1.09002 * 109.47535 * 296.04792 * 1 2 3 27 27 H 1.09002 * 109.47309 * 56.04944 * 1 2 3 28 28 H 1.09000 * 109.47078 * 176.04384 * 1 2 3 29 29 H 1.09011 * 109.46887 * 183.94883 * 3 2 1 30 30 H 1.08996 * 109.47308 * 303.94798 * 3 2 1 31 31 H 1.08996 * 109.47325 * 63.95768 * 3 2 1 32 32 H 1.08998 * 109.47240 * 49.99997 * 4 2 1 33 33 H 1.09006 * 109.46969 * 290.00226 * 4 2 1 34 34 H 1.09001 * 109.47075 * 60.00236 * 5 4 2 35 35 H 1.08996 * 109.47177 * 299.99783 * 5 4 2 36 36 H 1.08000 * 126.06553 * 359.97276 * 7 6 5 37 37 H 1.07998 * 126.06737 * 179.97438 * 8 7 6 38 38 H 0.96995 * 120.00333 * 179.97438 * 10 9 8 39 39 H 0.97005 * 119.99332 * 359.97438 * 15 13 11 40 40 H 1.08997 * 109.47046 * 300.00653 * 16 15 13 41 41 H 1.09005 * 109.46902 * 59.99713 * 16 15 13 42 42 H 0.97001 * 120.00547 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9704 6 7 4.0295 -1.7186 2.1052 7 6 4.7448 -2.8609 2.0294 8 6 5.0393 -3.2507 3.2902 9 6 4.4822 -2.3109 4.1730 10 7 4.5595 -2.3482 5.5697 11 6 5.2153 -3.3543 6.1816 12 8 5.7384 -4.2281 5.5211 13 6 5.2974 -3.3945 7.6722 14 8 4.7740 -2.5210 8.3325 15 7 5.9527 -4.4007 8.2842 16 6 6.0337 -4.4399 9.7464 17 6 6.8132 -5.6566 10.1739 18 1 7.2092 -6.3329 9.4308 19 6 7.0210 -5.9065 11.5138 20 7 6.5394 -5.0828 12.4188 21 14 7.9880 -7.4144 12.0437 22 1 8.4184 -8.1738 10.8424 23 1 9.1831 -6.9898 12.8160 24 1 7.1305 -8.2786 12.8941 25 7 3.8762 -1.3914 3.4585 26 1 -0.3634 0.4513 0.9233 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0828 1.3433 -0.0708 30 1 1.5898 1.9163 -0.8525 31 1 1.7043 1.8724 0.9233 32 1 1.5090 -1.7406 1.1757 33 1 1.7974 -0.2247 2.0629 34 1 3.9909 0.0195 0.9324 35 1 3.7024 -1.4965 0.0452 36 1 5.0305 -3.3732 1.1225 37 1 5.6022 -4.1292 3.5690 38 1 4.1412 -1.6502 6.0975 39 1 6.3707 -5.0990 7.7563 40 1 6.5350 -3.5416 10.1067 41 1 5.0283 -4.4875 10.1648 42 1 6.6852 -5.2587 13.3615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324839495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:34 Heat of formation + Delta-G solvation = 27.234647 kcal Electronic energy + Delta-G solvation = -24175.012701 eV Core-core repulsion = 20385.796460 eV Total energy + Delta-G solvation = -3789.216241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.54021 -40.11897 -38.23748 -37.92368 -35.40741 -34.30863 -32.92892 -32.36985 -30.25809 -28.81751 -28.09069 -27.75060 -25.41370 -24.20500 -22.60029 -21.79708 -21.46738 -20.42529 -19.72090 -18.37018 -17.58180 -16.66393 -16.41237 -16.11794 -15.82737 -15.66117 -15.49211 -15.07727 -14.94291 -14.61735 -14.26662 -14.11602 -13.66773 -13.37545 -13.13978 -13.06823 -12.90571 -12.45322 -12.25494 -12.11797 -12.07629 -11.92797 -11.67904 -11.22811 -10.98722 -10.94983 -10.88613 -10.75499 -10.32777 -9.47025 -9.16009 -8.99370 -8.94546 -8.84564 -8.35812 -8.12237 -6.22593 -4.29914 1.38847 1.88910 1.94072 2.76560 2.85632 3.22741 3.30291 3.34183 3.50004 3.68348 4.02588 4.27059 4.31469 4.35624 4.61179 4.69824 4.80861 4.91006 4.99922 5.02690 5.04869 5.14353 5.17593 5.32159 5.39891 5.43373 5.47731 5.53228 5.67810 6.04782 6.37598 6.41157 6.67528 6.87079 6.89596 7.06995 7.11456 7.35553 7.52228 7.69680 7.84744 7.86999 8.35719 8.54474 8.81806 9.36459 10.87494 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.040019 B = 0.002004 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.494735 B =13965.881566 C =14372.183854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.017 3.983 4 C 0.041 3.959 5 C 0.144 3.856 6 N -0.370 5.370 7 C 0.064 3.936 8 C -0.265 4.265 9 C 0.302 3.698 10 N -0.615 5.615 11 C 0.519 3.481 12 O -0.498 6.498 13 C 0.496 3.504 14 O -0.533 6.533 15 N -0.668 5.668 16 C 0.246 3.754 17 C -0.546 4.546 18 H 0.068 0.932 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.907 3.093 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.282 1.282 25 N -0.321 5.321 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.427 0.573 39 H 0.405 0.595 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.130 8.978 -26.297 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.132 4.132 4 C -0.088 4.088 5 C 0.022 3.978 6 N -0.154 5.154 7 C -0.081 4.081 8 C -0.295 4.295 9 C 0.046 3.954 10 N -0.265 5.265 11 C 0.300 3.700 12 O -0.369 6.369 13 C 0.274 3.726 14 O -0.412 6.412 15 N -0.318 5.318 16 C 0.126 3.874 17 C -0.584 4.584 18 H 0.086 0.914 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.734 3.266 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.151 5.151 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.195 0.805 37 H 0.192 0.808 38 H 0.265 0.735 39 H 0.240 0.760 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.656 9.849 -26.508 29.574 hybrid contribution 0.604 -0.981 1.074 1.575 sum -8.052 8.868 -25.434 28.113 Atomic orbital electron populations 1.22385 0.86488 1.02597 1.00853 1.61944 1.08581 1.14164 1.42390 1.22512 1.01001 0.88644 1.01006 1.22374 0.94150 0.99556 0.92683 1.21614 0.94171 0.96921 0.85076 1.48113 1.43220 1.20095 1.03995 1.22618 0.96577 0.88935 0.99970 1.21921 1.12243 1.05397 0.89951 1.19156 0.97176 0.94527 0.84509 1.42352 1.53767 1.27841 1.02535 1.20858 0.78005 0.80936 0.90154 1.90658 1.43461 1.36571 1.66220 1.19507 0.82239 0.84500 0.86383 1.90753 1.46814 1.37964 1.65650 1.46407 1.50256 1.23858 1.11240 1.19376 0.98285 0.98261 0.71500 1.21239 1.35831 1.08762 0.92602 0.91427 1.24943 0.95623 0.97145 0.96205 1.69971 1.44372 1.36520 1.01343 0.86304 0.79516 0.82039 0.78759 1.19484 1.20744 1.20751 1.77345 1.27721 1.23040 0.86999 0.95283 0.91001 0.91137 0.91064 0.91050 0.95118 0.90079 0.92863 0.89856 0.87626 0.80468 0.80833 0.73495 0.75992 0.94605 0.94612 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.57 60.06 0.57 0.72 16 2 N -0.55 -3.60 5.02 -251.25 -1.26 -4.86 16 3 C 0.02 0.09 9.32 60.07 0.56 0.65 16 4 C 0.04 0.31 5.14 -3.82 -0.02 0.29 16 5 C 0.14 1.03 6.43 -4.04 -0.03 1.01 16 6 N -0.37 -3.91 3.68 -61.38 -0.23 -4.14 16 7 C 0.06 0.65 11.43 -17.24 -0.20 0.45 16 8 C -0.26 -3.56 9.60 -39.82 -0.38 -3.94 16 9 C 0.30 4.46 8.10 -154.55 -1.25 3.21 16 10 N -0.61 -9.36 5.43 -11.58 -0.06 -9.42 16 11 C 0.52 8.88 7.85 -11.64 -0.09 8.79 16 12 O -0.50 -8.78 13.60 5.47 0.07 -8.71 16 13 C 0.50 9.87 7.89 -11.64 -0.09 9.78 16 14 O -0.53 -11.80 16.48 5.49 0.09 -11.71 16 15 N -0.67 -14.19 5.54 -61.95 -0.34 -14.53 16 16 C 0.25 6.30 5.43 -5.20 -0.03 6.27 16 17 C -0.55 -14.56 9.28 -34.45 -0.32 -14.88 16 18 H 0.07 1.71 7.60 -52.48 -0.40 1.31 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.88 -25.42 13.29 55.43 0.74 -24.69 16 21 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 N -0.32 -4.41 12.43 31.41 0.39 -4.02 16 26 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 28 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.07 0.35 6.47 -51.92 -0.34 0.01 16 30 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 31 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.65 8.06 -51.93 -0.42 0.24 16 33 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.08 0.56 6.55 -51.93 -0.34 0.22 16 35 H 0.11 0.53 8.07 -51.93 -0.42 0.11 16 36 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.17 2.49 5.91 -52.49 -0.31 2.17 16 38 H 0.43 6.06 8.29 -40.82 -0.34 5.72 16 39 H 0.41 7.90 7.79 -40.82 -0.32 7.58 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -31.85 361.99 -7.35 -39.20 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.81 Total: 7.79 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: -1.37 Total: 14.01 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.77 Total: -61.66 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.16 Total: -20.41 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.85 -7.35 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324839495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.440 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds