Wall clock time and date at job start Fri Apr 10 2020 18:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 110.99612 * 2 1 4 4 C 1.46904 * 111.00022 * 123.95272 * 2 1 3 5 5 C 1.53000 * 109.46976 * 170.00277 * 4 2 1 6 6 N 1.46498 * 109.46743 * 179.97438 * 5 4 2 7 7 C 1.34993 * 125.96688 * 125.00303 * 6 5 4 8 8 C 1.35215 * 107.87565 * 180.02562 * 7 6 5 9 9 C 1.40462 * 107.86762 * 0.02562 * 8 7 6 10 10 N 1.39933 * 125.98431 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99680 * 359.97438 * 10 9 8 12 12 O 1.21384 * 119.99843 * 359.97438 * 11 10 9 13 13 C 1.49335 * 119.99853 * 180.02562 * 11 10 9 14 14 O 1.21362 * 120.00365 * 359.97438 * 13 11 10 15 15 N 1.34778 * 120.00275 * 179.97438 * 13 11 10 16 16 C 1.46497 * 120.00682 * 179.97438 * 15 13 11 17 17 C 1.50690 * 109.47638 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00163 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00310 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00108 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99986 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47127 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47139 * 120.00059 * 21 19 17 24 24 H 1.48500 * 109.46735 * 239.99631 * 21 19 17 25 25 N 1.31274 * 108.03750 * 359.97438 * 9 8 7 26 26 H 1.09002 * 109.47535 * 296.04792 * 1 2 3 27 27 H 1.09002 * 109.47309 * 56.04944 * 1 2 3 28 28 H 1.09000 * 109.47078 * 176.04384 * 1 2 3 29 29 H 1.09011 * 109.46887 * 183.94883 * 3 2 1 30 30 H 1.08996 * 109.47308 * 303.94798 * 3 2 1 31 31 H 1.08996 * 109.47325 * 63.95768 * 3 2 1 32 32 H 1.08998 * 109.47240 * 49.99997 * 4 2 1 33 33 H 1.09006 * 109.46969 * 290.00226 * 4 2 1 34 34 H 1.09001 * 109.47075 * 60.00236 * 5 4 2 35 35 H 1.08996 * 109.47177 * 299.99783 * 5 4 2 36 36 H 1.08000 * 126.06553 * 359.97276 * 7 6 5 37 37 H 1.07998 * 126.06737 * 179.97438 * 8 7 6 38 38 H 0.96995 * 120.00333 * 179.97438 * 10 9 8 39 39 H 0.97005 * 119.99332 * 359.97438 * 15 13 11 40 40 H 1.08997 * 109.47046 * 300.00653 * 16 15 13 41 41 H 1.09005 * 109.46902 * 59.99713 * 16 15 13 42 42 H 0.97001 * 120.00547 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9704 6 7 4.0295 -1.7186 2.1052 7 6 4.7448 -2.8609 2.0294 8 6 5.0393 -3.2507 3.2902 9 6 4.4822 -2.3109 4.1730 10 7 4.5595 -2.3482 5.5697 11 6 5.2153 -3.3543 6.1816 12 8 5.7384 -4.2281 5.5211 13 6 5.2974 -3.3945 7.6722 14 8 4.7740 -2.5210 8.3325 15 7 5.9527 -4.4007 8.2842 16 6 6.0337 -4.4399 9.7464 17 6 6.8132 -5.6566 10.1739 18 1 7.2092 -6.3329 9.4308 19 6 7.0210 -5.9065 11.5138 20 7 6.5394 -5.0828 12.4188 21 14 7.9880 -7.4144 12.0437 22 1 8.4184 -8.1738 10.8424 23 1 9.1831 -6.9898 12.8160 24 1 7.1305 -8.2786 12.8941 25 7 3.8762 -1.3914 3.4585 26 1 -0.3634 0.4513 0.9233 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0828 1.3433 -0.0708 30 1 1.5898 1.9163 -0.8525 31 1 1.7043 1.8724 0.9233 32 1 1.5090 -1.7406 1.1757 33 1 1.7974 -0.2247 2.0629 34 1 3.9909 0.0195 0.9324 35 1 3.7024 -1.4965 0.0452 36 1 5.0305 -3.3732 1.1225 37 1 5.6022 -4.1292 3.5690 38 1 4.1412 -1.6502 6.0975 39 1 6.3707 -5.0990 7.7563 40 1 6.5350 -3.5416 10.1067 41 1 5.0283 -4.4875 10.1648 42 1 6.6852 -5.2587 13.3615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324839495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:33 Heat of formation + Delta-G solvation = 2.393620 kcal Electronic energy + Delta-G solvation = -24176.089888 eV Core-core repulsion = 20385.796460 eV Total energy + Delta-G solvation = -3790.293428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.58258 -41.51390 -39.65107 -38.63616 -36.80507 -35.97125 -34.39164 -33.74597 -31.20766 -29.94469 -29.38525 -28.53394 -26.77807 -25.21177 -24.23661 -22.67609 -22.44277 -21.54182 -21.11552 -19.86891 -18.53345 -18.23537 -17.74329 -17.27702 -17.03296 -16.87027 -16.62384 -16.33995 -15.99868 -15.81698 -15.46455 -15.11756 -14.94610 -14.66306 -14.21227 -14.08091 -13.97498 -13.91685 -13.42352 -13.03547 -12.95879 -12.79916 -12.75369 -12.69011 -12.59186 -12.31840 -12.19085 -11.83643 -11.70566 -11.49017 -10.85147 -10.74559 -10.07495 -9.96364 -9.50493 -9.33855 -8.30519 -6.46487 0.03050 0.80617 0.91908 1.45653 1.45748 1.59348 1.67067 1.69882 2.21703 2.36964 2.62954 2.98798 3.05162 3.38182 3.61842 3.79163 3.94245 4.15663 4.23900 4.33069 4.45287 4.48935 4.59014 4.65255 4.76177 4.77971 4.83789 4.91606 4.98096 5.00749 5.02239 5.18010 5.24923 5.51408 5.56658 5.76741 5.80309 5.85870 5.92574 6.11825 6.35190 6.57657 6.68831 6.69248 6.97961 7.26419 8.81344 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.040019 B = 0.002004 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.494735 B =13965.881566 C =14372.183854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.015 3.985 4 C 0.048 3.952 5 C 0.140 3.860 6 N -0.361 5.361 7 C 0.092 3.908 8 C -0.296 4.296 9 C 0.276 3.724 10 N -0.606 5.606 11 C 0.532 3.468 12 O -0.501 6.501 13 C 0.500 3.500 14 O -0.557 6.557 15 N -0.668 5.668 16 C 0.261 3.739 17 C -0.560 4.560 18 H 0.082 0.918 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.983 3.017 22 H -0.257 1.257 23 H -0.278 1.278 24 H -0.278 1.278 25 N -0.341 5.341 26 H 0.021 0.979 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.020 0.980 32 H 0.076 0.924 33 H 0.028 0.972 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.227 0.773 37 H 0.163 0.837 38 H 0.429 0.571 39 H 0.415 0.585 40 H 0.007 0.993 41 H 0.006 0.994 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 8.152 -29.256 31.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.271 5.271 3 C -0.133 4.133 4 C -0.081 4.081 5 C 0.020 3.980 6 N -0.145 5.145 7 C -0.055 4.055 8 C -0.326 4.326 9 C 0.022 3.978 10 N -0.255 5.255 11 C 0.312 3.688 12 O -0.373 6.373 13 C 0.279 3.721 14 O -0.437 6.437 15 N -0.318 5.318 16 C 0.140 3.860 17 C -0.598 4.598 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.807 3.193 22 H -0.180 1.180 23 H -0.203 1.203 24 H -0.204 1.204 25 N -0.172 5.172 26 H 0.039 0.961 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.110 0.890 35 H 0.157 0.843 36 H 0.243 0.757 37 H 0.180 0.820 38 H 0.268 0.732 39 H 0.252 0.748 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.123 9.054 -29.522 31.930 hybrid contribution 0.331 -0.590 1.829 1.950 sum -7.793 8.464 -27.693 29.988 Atomic orbital electron populations 1.22446 0.86068 1.02972 1.01049 1.62002 1.09040 1.14631 1.41390 1.22578 1.01604 0.88104 1.01035 1.22244 0.94636 0.99125 0.92098 1.21948 0.93605 0.97630 0.84842 1.48448 1.42306 1.20262 1.03484 1.23234 0.94004 0.87791 1.00430 1.21951 1.13847 1.05583 0.91246 1.19317 0.98741 0.95817 0.83924 1.42127 1.52902 1.27054 1.03421 1.19977 0.78792 0.81647 0.88341 1.90669 1.44023 1.36921 1.65703 1.19943 0.80883 0.83380 0.87883 1.90735 1.47437 1.38682 1.66824 1.46113 1.51136 1.24879 1.09672 1.18877 0.96179 0.97091 0.73863 1.21604 1.35821 1.09060 0.93315 0.89993 1.25972 0.96517 1.00398 0.96219 1.70106 1.45770 1.38662 1.01863 0.85123 0.77761 0.77838 0.78596 1.18019 1.20338 1.20351 1.77288 1.27921 1.23271 0.88715 0.96066 0.89668 0.90897 0.90216 0.89814 0.96145 0.90579 0.95325 0.89050 0.84286 0.75658 0.81982 0.73219 0.74799 0.97546 0.97561 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 127.69 1.22 1.45 16 2 N -0.55 -6.13 5.02 -948.82 -4.76 -10.89 16 3 C 0.01 0.14 9.32 127.69 1.19 1.33 16 4 C 0.05 0.65 5.14 86.30 0.44 1.10 16 5 C 0.14 1.58 6.43 86.38 0.56 2.14 16 6 N -0.36 -6.75 3.68 -348.11 -1.28 -8.03 16 7 C 0.09 1.56 11.43 83.51 0.95 2.52 16 8 C -0.30 -7.55 9.60 22.11 0.21 -7.34 16 9 C 0.28 8.04 8.10 133.40 1.08 9.12 16 10 N -0.61 -18.68 5.43 -308.89 -1.68 -20.35 16 11 C 0.53 18.40 7.85 87.23 0.69 19.09 16 12 O -0.50 -17.60 13.60 -3.35 -0.05 -17.64 16 13 C 0.50 20.45 7.89 87.23 0.69 21.13 16 14 O -0.56 -25.58 16.48 -3.28 -0.05 -25.63 16 15 N -0.67 -29.06 5.54 -468.27 -2.59 -31.66 16 16 C 0.26 13.93 5.43 85.63 0.46 14.40 16 17 C -0.56 -30.17 9.28 25.60 0.24 -29.93 16 18 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 19 C 0.01 0.50 5.46 84.66 0.46 0.96 16 20 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 21 Si 0.98 42.05 29.54 68.60 2.03 44.07 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 25 N -0.34 -9.09 12.43 -54.53 -0.68 -9.77 16 26 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.08 0.61 8.12 -2.39 -0.02 0.60 16 28 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 29 H 0.08 0.59 6.47 -2.38 -0.02 0.57 16 30 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 31 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.08 1.11 8.06 -2.39 -0.02 1.09 16 33 H 0.03 0.53 8.12 -2.38 -0.02 0.51 16 34 H 0.09 0.96 6.55 -2.39 -0.02 0.94 16 35 H 0.14 0.73 8.07 -2.39 -0.02 0.71 16 36 H 0.23 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.16 4.51 5.91 -2.91 -0.02 4.49 16 38 H 0.43 12.53 8.29 -92.71 -0.77 11.76 16 39 H 0.42 16.29 7.79 -92.70 -0.72 15.56 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -70.34 361.99 -1.01 -71.35 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: -0.43 Total: 26.61 kcal Atomic # 6 Polarization: 27.76 SS G_CDS: 8.20 Total: 35.96 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -10.71 Total: -134.72 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.10 Total: -43.28 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -70.34 -1.01 -71.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324839495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.744 kcal (2) G-P(sol) polarization free energy of solvation -70.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds