Wall clock time and date at job start Fri Apr 10 2020 18:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99945 * 2 1 4 4 C 1.46895 * 111.00229 * 123.95492 * 2 1 3 5 5 C 1.52998 * 109.46907 * 66.04908 * 4 2 1 6 6 N 1.46502 * 109.47299 * 179.97438 * 5 4 2 7 7 C 1.35034 * 124.88692 * 125.01755 * 6 5 4 8 8 C 1.35371 * 107.22924 * 180.02562 * 7 6 5 9 9 C 1.41496 * 105.50187 * 0.02562 * 8 7 6 10 10 C 1.47705 * 126.51803 * 179.97438 * 9 8 7 11 11 O 1.21576 * 120.00207 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00345 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00304 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47403 * 179.97438 * 13 12 10 15 15 O 1.21295 * 119.99409 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.37090 * 119.99873 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00331 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99930 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99745 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00056 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46925 * 90.00329 * 21 19 17 23 23 H 1.48506 * 109.46835 * 210.00306 * 21 19 17 24 24 H 1.48496 * 109.47025 * 329.99981 * 21 19 17 25 25 N 1.28468 * 124.88202 * 305.02338 * 6 5 4 26 26 H 1.09000 * 109.46873 * 296.04418 * 1 2 3 27 27 H 1.09003 * 109.47487 * 56.04110 * 1 2 3 28 28 H 1.09001 * 109.47217 * 176.04699 * 1 2 3 29 29 H 1.08994 * 109.47134 * 183.95619 * 3 2 1 30 30 H 1.09002 * 109.47096 * 303.95837 * 3 2 1 31 31 H 1.09005 * 109.46814 * 63.95891 * 3 2 1 32 32 H 1.08996 * 109.47512 * 306.04569 * 4 2 1 33 33 H 1.09005 * 109.47191 * 186.04376 * 4 2 1 34 34 H 1.08991 * 109.47644 * 59.99902 * 5 4 2 35 35 H 1.09004 * 109.47035 * 299.99258 * 5 4 2 36 36 H 1.07998 * 126.38339 * 0.02562 * 7 6 5 37 37 H 1.07999 * 127.24829 * 179.97438 * 8 7 6 38 38 H 0.96998 * 120.00006 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.47171 * 300.00083 * 13 12 10 40 40 H 1.09007 * 109.46888 * 60.00198 * 13 12 10 41 41 H 0.96996 * 119.99833 * 359.97438 * 16 14 13 42 42 H 0.97007 * 119.99797 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 7 2.1571 -3.0067 2.1043 7 6 1.4194 -3.8035 2.9070 8 6 2.2582 -4.3298 3.8300 9 6 3.5343 -3.7983 3.5279 10 6 4.7933 -4.0703 4.2509 11 8 4.7944 -4.8175 5.2099 12 7 5.9408 -3.4893 3.8481 13 6 7.1895 -3.7587 4.5654 14 6 8.3154 -2.9935 3.9190 15 8 8.0962 -2.2918 2.9542 16 7 9.5658 -3.0889 4.4128 17 6 10.5899 -2.3924 3.8250 18 1 10.3948 -1.7676 2.9659 19 6 11.8789 -2.4903 4.3345 20 7 12.1164 -3.2510 5.3794 21 14 13.2745 -1.5418 3.5331 22 1 13.3922 -0.2044 4.1674 23 1 14.5462 -2.2878 3.7111 24 1 12.9945 -1.3795 2.0838 25 7 3.3861 -3.0149 2.4783 26 1 -0.3633 0.4512 0.9233 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7044 1.8723 0.9234 32 1 1.5612 -0.3873 2.0627 33 1 3.0798 -0.6611 1.1755 34 1 2.0658 -2.6213 0.0450 35 1 0.5472 -2.3475 0.9323 36 1 0.3581 -3.9868 2.8274 37 1 2.0063 -5.0111 4.6292 38 1 5.9400 -2.8929 3.0831 39 1 7.0864 -3.4456 5.6043 40 1 7.4073 -4.8261 4.5275 41 1 9.7409 -3.6498 5.1846 42 1 13.0163 -3.3196 5.7349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329067115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:43 Heat of formation + Delta-G solvation = 17.605827 kcal Electronic energy + Delta-G solvation = -24483.296478 eV Core-core repulsion = 20693.662700 eV Total energy + Delta-G solvation = -3789.633778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.74065 -39.26974 -38.16139 -37.91881 -34.39933 -33.87184 -33.59179 -31.34494 -30.84808 -29.65462 -28.06899 -27.71298 -25.39662 -24.39992 -22.73426 -21.67397 -21.30521 -19.75858 -19.49784 -18.21977 -17.81550 -16.92128 -16.41306 -15.90522 -15.60161 -15.43009 -15.28336 -15.05989 -14.77869 -14.46439 -14.15968 -13.92023 -13.67587 -13.57968 -13.42934 -12.97451 -12.88434 -12.47032 -12.13898 -12.13327 -12.07121 -11.85514 -11.59879 -11.55727 -11.09344 -10.87303 -10.42689 -10.28328 -9.94264 -9.59391 -9.36075 -9.16452 -8.91595 -8.69353 -8.57487 -8.05540 -6.47353 -3.89032 1.61439 2.07948 2.20068 3.14781 3.24449 3.29320 3.40761 3.54979 3.61044 3.80145 4.05351 4.15341 4.41275 4.60287 4.63375 4.68373 4.80870 4.88874 4.93349 5.04444 5.12933 5.21180 5.21372 5.33548 5.37020 5.49686 5.54458 5.58859 5.69287 5.95642 6.01609 6.12654 6.31077 6.41410 6.46340 6.64566 6.73850 7.50126 7.70460 7.96531 8.01958 8.48120 8.52285 9.09053 9.44018 9.92452 10.69677 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.014223 B = 0.002719 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.134735 B =10294.349040 C =12123.866509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.040 3.960 5 C 0.125 3.875 6 N -0.283 5.283 7 C -0.023 4.023 8 C -0.178 4.178 9 C -0.010 4.010 10 C 0.600 3.400 11 O -0.543 6.543 12 N -0.693 5.693 13 C 0.108 3.892 14 C 0.429 3.571 15 O -0.594 6.594 16 N -0.550 5.550 17 C -0.303 4.303 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.269 1.269 25 N -0.253 5.253 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.180 0.820 37 H 0.163 0.837 38 H 0.417 0.583 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.602 2.998 -7.371 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.088 4.088 5 C 0.005 3.995 6 N -0.072 5.072 7 C -0.165 4.165 8 C -0.206 4.206 9 C -0.171 4.171 10 C 0.384 3.616 11 O -0.419 6.419 12 N -0.347 5.347 13 C -0.020 4.020 14 C 0.215 3.785 15 O -0.480 6.480 16 N -0.185 5.185 17 C -0.433 4.433 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.536 5.536 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 N -0.088 5.088 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.197 0.803 37 H 0.180 0.820 38 H 0.256 0.744 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.806 3.445 -8.488 25.508 hybrid contribution 0.037 0.252 1.057 1.087 sum -23.769 3.697 -7.431 25.177 Atomic orbital electron populations 1.22527 0.87353 1.02349 1.01030 1.61887 1.07989 1.14740 1.42205 1.22410 1.01505 0.87682 1.00750 1.22382 1.02781 0.91582 0.92093 1.21953 0.99593 0.91227 0.86772 1.45488 1.04663 1.33396 1.23671 1.22837 0.99394 0.99188 0.95107 1.21770 0.91033 1.05262 1.02528 1.21974 0.95746 1.02061 0.97271 1.16846 0.81570 0.80209 0.82950 1.90775 1.85917 1.37508 1.27715 1.45577 1.06452 1.48313 1.34364 1.21004 0.83647 1.00790 0.96517 1.19741 0.84183 0.87165 0.87428 1.90511 1.83141 1.44678 1.29690 1.41784 1.05817 1.41829 1.29117 1.19728 0.86133 1.24246 1.13186 0.87696 1.25319 0.98806 0.97377 0.96278 1.69619 1.22790 1.38251 1.22925 0.85816 0.79582 0.79054 0.79595 1.20311 1.20825 1.19319 1.73591 1.00891 1.20312 1.14047 0.95320 0.90886 0.91226 0.90609 0.90915 0.95323 0.93880 0.88386 0.87822 0.88033 0.80270 0.81982 0.74386 0.89593 0.89577 0.77022 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.32 60.06 0.56 0.64 16 2 N -0.54 -4.04 5.02 -251.26 -1.26 -5.30 16 3 C 0.02 0.17 9.57 60.07 0.57 0.75 16 4 C 0.04 0.34 5.06 -3.83 -0.02 0.32 16 5 C 0.13 0.92 6.32 -4.04 -0.03 0.90 16 6 N -0.28 -3.02 3.41 -61.33 -0.21 -3.23 16 7 C -0.02 -0.22 11.40 -17.17 -0.20 -0.41 16 8 C -0.18 -2.20 10.81 -39.36 -0.43 -2.62 16 9 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 10 C 0.60 10.89 7.83 -12.39 -0.10 10.79 16 11 O -0.54 -10.91 16.93 5.30 0.09 -10.82 16 12 N -0.69 -13.03 5.52 -62.47 -0.35 -13.37 16 13 C 0.11 2.10 6.15 -5.19 -0.03 2.07 16 14 C 0.43 10.21 7.85 -10.99 -0.09 10.13 16 15 O -0.59 -15.81 15.24 5.54 0.08 -15.72 16 16 N -0.55 -13.96 5.29 -10.96 -0.06 -14.02 16 17 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 18 H 0.11 3.02 7.16 -52.48 -0.38 2.65 16 19 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 21 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 N -0.25 -3.63 11.36 33.42 0.38 -3.25 16 26 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 28 H 0.07 0.27 6.47 -51.93 -0.34 -0.07 16 29 H 0.08 0.58 8.12 -51.93 -0.42 0.15 16 30 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.10 1.03 8.01 -51.93 -0.42 0.62 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.44 6.45 -51.93 -0.34 0.10 16 36 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.42 8.06 7.16 -40.82 -0.29 7.77 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.40 9.62 7.90 -40.82 -0.32 9.30 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -33.56 364.08 -6.57 -40.13 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -5.86 Total: 13.95 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: -0.58 Total: 13.84 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.77 Total: -62.68 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: 0.17 Total: -26.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.56 -6.57 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329067115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.734 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds