Wall clock time and date at job start Fri Apr 10 2020 18:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99945 * 2 1 4 4 C 1.46895 * 111.00229 * 123.95492 * 2 1 3 5 5 C 1.52998 * 109.46907 * 66.04908 * 4 2 1 6 6 N 1.46502 * 109.47299 * 179.97438 * 5 4 2 7 7 C 1.35034 * 124.88692 * 125.01755 * 6 5 4 8 8 C 1.35371 * 107.22924 * 180.02562 * 7 6 5 9 9 C 1.41496 * 105.50187 * 0.02562 * 8 7 6 10 10 C 1.47705 * 126.51803 * 179.97438 * 9 8 7 11 11 O 1.21576 * 120.00207 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00345 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00304 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47403 * 179.97438 * 13 12 10 15 15 O 1.21295 * 119.99409 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.37090 * 119.99873 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00331 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99930 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99745 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00056 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46925 * 90.00329 * 21 19 17 23 23 H 1.48506 * 109.46835 * 210.00306 * 21 19 17 24 24 H 1.48496 * 109.47025 * 329.99981 * 21 19 17 25 25 N 1.28468 * 124.88202 * 305.02338 * 6 5 4 26 26 H 1.09000 * 109.46873 * 296.04418 * 1 2 3 27 27 H 1.09003 * 109.47487 * 56.04110 * 1 2 3 28 28 H 1.09001 * 109.47217 * 176.04699 * 1 2 3 29 29 H 1.08994 * 109.47134 * 183.95619 * 3 2 1 30 30 H 1.09002 * 109.47096 * 303.95837 * 3 2 1 31 31 H 1.09005 * 109.46814 * 63.95891 * 3 2 1 32 32 H 1.08996 * 109.47512 * 306.04569 * 4 2 1 33 33 H 1.09005 * 109.47191 * 186.04376 * 4 2 1 34 34 H 1.08991 * 109.47644 * 59.99902 * 5 4 2 35 35 H 1.09004 * 109.47035 * 299.99258 * 5 4 2 36 36 H 1.07998 * 126.38339 * 0.02562 * 7 6 5 37 37 H 1.07999 * 127.24829 * 179.97438 * 8 7 6 38 38 H 0.96998 * 120.00006 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.47171 * 300.00083 * 13 12 10 40 40 H 1.09007 * 109.46888 * 60.00198 * 13 12 10 41 41 H 0.96996 * 119.99833 * 359.97438 * 16 14 13 42 42 H 0.97007 * 119.99797 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 7 2.1571 -3.0067 2.1043 7 6 1.4194 -3.8035 2.9070 8 6 2.2582 -4.3298 3.8300 9 6 3.5343 -3.7983 3.5279 10 6 4.7933 -4.0703 4.2509 11 8 4.7944 -4.8175 5.2099 12 7 5.9408 -3.4893 3.8481 13 6 7.1895 -3.7587 4.5654 14 6 8.3154 -2.9935 3.9190 15 8 8.0962 -2.2918 2.9542 16 7 9.5658 -3.0889 4.4128 17 6 10.5899 -2.3924 3.8250 18 1 10.3948 -1.7676 2.9659 19 6 11.8789 -2.4903 4.3345 20 7 12.1164 -3.2510 5.3794 21 14 13.2745 -1.5418 3.5331 22 1 13.3922 -0.2044 4.1674 23 1 14.5462 -2.2878 3.7111 24 1 12.9945 -1.3795 2.0838 25 7 3.3861 -3.0149 2.4783 26 1 -0.3633 0.4512 0.9233 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7044 1.8723 0.9234 32 1 1.5612 -0.3873 2.0627 33 1 3.0798 -0.6611 1.1755 34 1 2.0658 -2.6213 0.0450 35 1 0.5472 -2.3475 0.9323 36 1 0.3581 -3.9868 2.8274 37 1 2.0063 -5.0111 4.6292 38 1 5.9400 -2.8929 3.0831 39 1 7.0864 -3.4456 5.6043 40 1 7.4073 -4.8261 4.5275 41 1 9.7409 -3.6498 5.1846 42 1 13.0163 -3.3196 5.7349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329067115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:42 Heat of formation + Delta-G solvation = -9.601834 kcal Electronic energy + Delta-G solvation = -24484.476290 eV Core-core repulsion = 20693.662700 eV Total energy + Delta-G solvation = -3790.813590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.65713 -40.86206 -39.78970 -38.67899 -36.27325 -35.35270 -34.63575 -33.38943 -31.78008 -30.57810 -29.21891 -28.52066 -26.79280 -25.75111 -23.76890 -22.48244 -22.08975 -21.38914 -20.95626 -20.08898 -19.06092 -18.02647 -17.38219 -17.17400 -16.93017 -16.71021 -16.46509 -16.38845 -16.00502 -15.75381 -15.47129 -15.24215 -15.03196 -14.66257 -14.29146 -14.03635 -13.89867 -13.63249 -13.55550 -13.37855 -13.02284 -12.91294 -12.68248 -12.56897 -12.46676 -12.19270 -12.12930 -11.78710 -11.58393 -11.38658 -10.58388 -10.40671 -10.18464 -10.10351 -9.99970 -9.46880 -8.51709 -6.02035 0.49569 1.20820 1.35769 1.41336 1.43496 1.55188 1.88588 2.01874 2.31494 2.33892 2.92531 3.09318 3.15101 3.34071 3.69891 3.83839 3.98146 4.06575 4.18423 4.26050 4.27010 4.40140 4.40459 4.44484 4.59017 4.61507 4.73293 4.77800 4.78972 4.82033 4.98251 5.04020 5.18571 5.35141 5.37580 5.81414 5.89113 5.90808 5.99638 6.36990 6.48121 6.87592 7.02366 7.08935 7.42384 7.93493 8.65269 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.014223 B = 0.002719 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.134735 B =10294.349040 C =12123.866509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.552 5.552 3 C 0.023 3.977 4 C 0.046 3.954 5 C 0.123 3.877 6 N -0.276 5.276 7 C 0.007 3.993 8 C -0.196 4.196 9 C -0.045 4.045 10 C 0.601 3.399 11 O -0.568 6.568 12 N -0.698 5.698 13 C 0.120 3.880 14 C 0.432 3.568 15 O -0.624 6.624 16 N -0.558 5.558 17 C -0.338 4.338 18 H 0.085 0.915 19 C -0.010 4.010 20 N -0.915 5.915 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.270 1.270 25 N -0.280 5.280 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.234 0.766 37 H 0.170 0.830 38 H 0.414 0.586 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.400 0.600 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.755 2.963 -8.121 28.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.277 5.277 3 C -0.125 4.125 4 C -0.083 4.083 5 C 0.004 3.996 6 N -0.065 5.065 7 C -0.136 4.136 8 C -0.224 4.224 9 C -0.203 4.203 10 C 0.387 3.613 11 O -0.446 6.446 12 N -0.351 5.351 13 C -0.008 4.008 14 C 0.219 3.781 15 O -0.512 6.512 16 N -0.193 5.193 17 C -0.467 4.467 18 H 0.103 0.897 19 C -0.211 4.211 20 N -0.555 5.555 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.195 1.195 24 H -0.195 1.195 25 N -0.117 5.117 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.163 0.837 36 H 0.251 0.749 37 H 0.188 0.812 38 H 0.252 0.748 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.234 0.766 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.969 3.401 -9.225 27.768 hybrid contribution 0.582 0.296 1.231 1.393 sum -25.387 3.696 -7.994 26.871 Atomic orbital electron populations 1.22633 0.85550 1.03788 1.01454 1.61919 1.09625 1.14629 1.41522 1.22425 1.00793 0.87959 1.01333 1.22223 1.00926 0.92696 0.92434 1.22256 1.01879 0.89870 0.85603 1.45855 1.03778 1.32972 1.23925 1.23564 1.01053 0.96375 0.92596 1.22024 0.90214 1.06196 1.03996 1.21757 0.95578 1.04361 0.98613 1.17229 0.82085 0.79302 0.82662 1.90740 1.86438 1.38573 1.28876 1.45615 1.06540 1.48672 1.34321 1.20870 0.82523 1.00696 0.96671 1.20387 0.84597 0.86424 0.86707 1.90485 1.83740 1.45947 1.31073 1.41819 1.06100 1.42030 1.29359 1.19734 0.87575 1.25664 1.13744 0.89709 1.26146 1.00545 0.97865 0.96560 1.69683 1.23735 1.38640 1.23463 0.84858 0.76650 0.77996 0.78410 1.19491 1.19475 1.19512 1.73538 1.03174 1.20786 1.14222 0.95198 0.90117 0.89330 0.92051 0.89501 0.95416 0.94291 0.91546 0.87763 0.83717 0.74950 0.81225 0.74793 0.88238 0.88242 0.76588 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.32 127.69 1.19 1.29 16 2 N -0.55 -7.41 5.02 -948.85 -4.76 -12.17 16 3 C 0.02 0.31 9.57 127.69 1.22 1.53 16 4 C 0.05 0.73 5.06 86.30 0.44 1.17 16 5 C 0.12 1.48 6.32 86.38 0.55 2.03 16 6 N -0.28 -5.28 3.41 -347.95 -1.19 -6.47 16 7 C 0.01 0.10 11.40 83.54 0.95 1.05 16 8 C -0.20 -4.53 10.81 22.41 0.24 -4.29 16 9 C -0.04 -1.38 7.13 42.45 0.30 -1.08 16 10 C 0.60 22.27 7.83 86.75 0.68 22.94 16 11 O -0.57 -23.15 16.93 -3.96 -0.07 -23.21 16 12 N -0.70 -27.01 5.52 -469.83 -2.60 -29.60 16 13 C 0.12 4.76 6.15 85.63 0.53 5.29 16 14 C 0.43 21.14 7.85 87.66 0.69 21.83 16 15 O -0.62 -34.42 15.24 -3.08 -0.05 -34.47 16 16 N -0.56 -29.03 5.29 -306.98 -1.62 -30.65 16 17 C -0.34 -19.14 9.68 84.04 0.81 -18.32 16 18 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 19 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 20 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 21 Si 1.00 42.57 29.55 68.60 2.03 44.60 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 N -0.28 -7.98 11.36 -48.18 -0.55 -8.53 16 26 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.08 0.50 8.12 -2.39 -0.02 0.48 16 28 H 0.09 0.31 6.47 -2.39 -0.02 0.30 16 29 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 30 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 31 H 0.03 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.04 0.64 8.12 -2.39 -0.02 0.62 16 33 H 0.07 1.47 8.01 -2.38 -0.02 1.45 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.15 0.51 6.45 -2.38 -0.02 0.50 16 36 H 0.23 0.85 8.06 -2.91 -0.02 0.82 16 37 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.41 16.70 7.16 -92.71 -0.66 16.03 16 39 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 41 H 0.40 19.86 7.90 -92.71 -0.73 19.12 16 42 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 Total: -1.00 -74.73 364.08 -0.79 -75.52 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -0.34 Total: 40.79 kcal Atomic # 6 Polarization: 25.27 SS G_CDS: 8.07 Total: 33.34 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -10.43 Total: -136.57 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -0.11 Total: -57.68 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -74.73 -0.79 -75.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329067115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.917 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds