Wall clock time and date at job start Fri Apr 10 2020 18:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48500 * 109.47395 * 239.99920 * 3 2 1 5 5 H 1.48504 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47188 * 119.99517 * 3 2 1 7 7 C 1.38812 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00036 * 200.42934 * 7 2 1 9 9 N 1.36938 * 120.00058 * 20.43656 * 7 2 1 10 10 C 1.47201 * 120.81625 * 25.92312 * 9 7 2 11 11 C 1.53191 * 108.85394 * 126.33988 * 10 9 7 12 12 C 1.53036 * 109.31346 * 54.65590 * 11 10 9 13 13 C 1.53043 * 109.53877 * 298.63600 * 12 11 10 14 14 H 1.09004 * 109.49134 * 301.41238 * 13 12 11 15 15 C 1.52997 * 109.49966 * 181.31389 * 13 12 11 16 16 N 1.46498 * 109.46932 * 175.15655 * 15 13 12 17 17 C 1.34777 * 119.99811 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00086 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99964 * 180.02562 * 17 16 15 20 20 H 1.09003 * 112.85163 * 25.74978 * 19 17 16 21 21 C 1.53778 * 113.61525 * 156.94360 * 19 17 16 22 22 C 1.53784 * 87.08113 * 139.97851 * 21 19 17 23 23 C 1.53777 * 113.61464 * 254.55008 * 19 17 16 24 24 H 1.09003 * 113.61651 * 105.46554 * 23 19 17 25 25 C 1.50699 * 113.61427 * 334.56994 * 23 19 17 26 26 N 1.34777 * 120.00117 * 98.20721 * 25 23 19 27 27 O 1.21284 * 119.99880 * 278.20714 * 25 23 19 28 28 C 1.46925 * 120.63087 * 205.78514 * 9 7 2 29 29 H 0.96998 * 119.99831 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.53202 * 6.54004 * 10 9 7 31 31 H 1.09001 * 109.68271 * 246.23596 * 10 9 7 32 32 H 1.08997 * 109.50221 * 294.70113 * 11 10 9 33 33 H 1.09009 * 109.49412 * 174.60368 * 11 10 9 34 34 H 1.08996 * 109.46354 * 178.61487 * 12 11 10 35 35 H 1.09001 * 109.44862 * 58.64513 * 12 11 10 36 36 H 1.08999 * 109.47261 * 295.16215 * 15 13 12 37 37 H 1.09002 * 109.47098 * 55.16115 * 15 13 12 38 38 H 0.97001 * 120.00430 * 0.02562 * 16 15 13 39 39 H 1.08997 * 113.61682 * 254.53178 * 21 19 17 40 40 H 1.09008 * 113.61874 * 25.34925 * 21 19 17 41 41 H 1.08997 * 113.61043 * 89.11914 * 22 21 19 42 42 H 1.09001 * 113.61394 * 219.93255 * 22 21 19 43 43 H 0.96998 * 120.00350 * 0.02562 * 26 25 23 44 44 H 0.97008 * 119.99843 * 180.02562 * 26 25 23 45 45 H 1.09010 * 109.58550 * 113.81652 * 28 9 7 46 46 H 1.08996 * 109.58747 * 353.53968 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0393 -1.2314 0.3270 9 7 1.3902 -2.3509 -0.4130 10 6 0.2622 -2.3010 -1.3575 11 6 0.5685 -3.2211 -2.5434 12 6 0.8908 -4.6245 -2.0252 13 6 2.1283 -4.5666 -1.1267 14 1 2.9694 -4.1642 -1.6914 15 6 2.4692 -5.9749 -0.6355 16 7 3.7183 -5.9365 0.1289 17 6 4.2171 -7.0693 0.6622 18 8 3.6321 -8.1206 0.5089 19 6 5.5018 -7.0297 1.4490 20 1 5.6950 -6.0541 1.8953 21 6 5.6567 -8.1996 2.4350 22 6 7.1376 -8.2476 2.0233 23 6 6.7071 -7.6094 0.6901 24 1 7.3990 -6.8507 0.3246 25 6 6.3283 -8.6154 -0.3661 26 7 6.2376 -8.2362 -1.6562 27 8 6.1051 -9.7663 -0.0551 28 6 1.8398 -3.6617 0.0753 29 1 -0.4850 0.8400 -0.0004 30 1 0.1293 -1.2791 -1.7127 31 1 -0.6480 -2.6363 -0.8603 32 1 1.4241 -2.8314 -3.0948 33 1 -0.2991 -3.2668 -3.2019 34 1 1.0850 -5.2873 -2.8684 35 1 0.0440 -5.0035 -1.4529 36 1 1.6645 -6.3422 0.0015 37 1 2.5873 -6.6396 -1.4913 38 1 4.1865 -5.0958 0.2512 39 1 5.5018 -7.9166 3.4761 40 1 5.0939 -9.0885 2.1498 41 1 7.7793 -7.6051 2.6262 42 1 7.5294 -9.2594 1.9194 43 1 6.4164 -7.3159 -1.9050 44 1 5.9934 -8.8837 -2.3360 45 1 1.0596 -4.1096 0.6909 46 1 2.7471 -3.5397 0.6669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331389484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:59 Heat of formation + Delta-G solvation = -46.828267 kcal Electronic energy + Delta-G solvation = -26390.031892 eV Core-core repulsion = 22701.144386 eV Total energy + Delta-G solvation = -3688.887506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.16311 -39.08550 -37.87243 -36.87358 -34.79614 -33.77433 -33.02714 -30.56678 -30.45996 -27.38472 -26.89110 -25.37290 -24.86291 -22.23711 -22.03269 -21.11547 -20.64513 -19.37559 -19.05695 -17.79730 -17.32885 -16.71502 -16.23087 -16.00727 -15.59357 -15.04198 -14.87165 -14.48223 -14.34647 -14.01615 -13.65835 -13.49232 -13.41735 -12.91578 -12.82369 -12.49549 -12.36259 -12.22519 -11.98468 -11.47392 -11.33075 -11.10659 -11.08075 -10.75677 -10.71860 -10.54926 -10.30108 -10.23185 -10.04752 -9.98018 -9.79547 -9.77359 -9.51105 -9.48159 -8.94020 -8.50375 -6.76292 -5.84880 -3.24224 2.35002 2.67725 3.15608 3.33444 3.39828 3.40556 3.40722 4.15121 4.34639 4.43591 4.51168 4.53486 4.85931 4.99693 5.08608 5.19879 5.24969 5.36095 5.39082 5.41104 5.56200 5.58393 5.72937 5.77945 5.82075 5.91532 5.95550 6.18350 6.22021 6.27911 6.32123 6.49230 6.53494 6.62246 6.64790 6.72105 6.80040 6.90713 7.15821 7.33326 7.57122 7.60366 7.72783 8.13763 8.27973 8.37021 9.14033 9.78944 10.35613 11.23823 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.003216 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.069910 B = 8705.344951 C = 9451.610391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.116 4.116 14 H 0.072 0.928 15 C 0.127 3.873 16 N -0.721 5.721 17 C 0.510 3.490 18 O -0.529 6.529 19 C -0.123 4.123 20 H 0.119 0.881 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.124 4.124 24 H 0.103 0.897 25 C 0.536 3.464 26 N -0.853 5.853 27 O -0.526 6.526 28 C 0.154 3.846 29 H 0.255 0.745 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.402 0.598 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.400 0.600 44 H 0.402 0.598 45 H 0.018 0.982 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.881 -11.988 -1.654 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.138 4.138 13 C -0.137 4.137 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.373 5.373 17 C 0.296 3.704 18 O -0.405 6.405 19 C -0.145 4.145 20 H 0.137 0.863 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.146 4.146 24 H 0.121 0.879 25 C 0.320 3.680 26 N -0.416 5.416 27 O -0.400 6.400 28 C 0.027 3.973 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.237 0.763 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.228 0.772 44 H 0.232 0.768 45 H 0.036 0.964 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.201 -13.284 -1.352 18.087 hybrid contribution 0.524 1.758 -0.483 1.897 sum 12.724 -11.526 -1.836 17.266 Atomic orbital electron populations 1.70063 1.05319 1.25713 1.53208 1.24967 0.95176 0.98412 1.00987 0.86411 0.79027 0.83502 0.78098 1.21067 1.21634 1.20890 1.19104 0.93827 0.85420 1.40230 0.91689 1.44105 1.37570 1.00522 1.49171 1.20840 0.88713 0.98922 0.87330 1.22153 1.00162 0.95745 0.99934 1.21344 0.96930 0.97713 0.97831 1.21940 0.98822 0.93451 0.99484 0.90933 1.21441 0.85400 0.97782 0.95026 1.46146 1.26060 1.10406 1.54677 1.20415 0.86346 0.83942 0.79736 1.90744 1.60396 1.30115 1.59247 1.22761 0.91886 1.01883 0.97935 0.86278 1.22911 0.96412 0.98035 0.98199 1.22769 0.97324 1.02034 0.93433 1.22406 0.98349 0.98346 0.95538 0.87857 1.19848 0.76147 0.88720 0.83259 1.43780 1.73842 1.15269 1.08748 1.90728 1.48223 1.19869 1.81225 1.20879 0.97373 0.86872 0.92144 0.93537 0.89606 0.96424 0.92746 0.93149 0.93488 0.92485 0.91697 0.92187 0.76319 0.90680 0.87707 0.89007 0.89844 0.77230 0.76757 0.96420 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 11.27 55.49 0.63 -24.90 16 2 C 0.00 0.10 4.85 -17.43 -0.08 0.01 16 3 Si 0.90 20.91 29.60 -169.99 -5.03 15.88 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.72 9.59 -15.06 -0.14 -6.86 16 8 H 0.07 1.64 7.90 -52.49 -0.41 1.23 16 9 N -0.59 -14.08 3.01 -172.10 -0.52 -14.60 16 10 C 0.17 3.86 5.36 -3.56 -0.02 3.84 16 11 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 12 C -0.10 -1.59 5.17 -26.69 -0.14 -1.72 16 13 C -0.12 -1.80 2.38 -90.50 -0.22 -2.02 16 14 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 15 C 0.13 1.77 5.07 -4.04 -0.02 1.75 16 16 N -0.72 -8.80 5.33 -60.30 -0.32 -9.12 16 17 C 0.51 6.72 6.43 -10.98 -0.07 6.65 16 18 O -0.53 -9.18 15.19 5.55 0.08 -9.10 16 19 C -0.12 -1.20 4.09 -90.96 -0.37 -1.57 16 20 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.12 -1.23 7.14 -25.92 -0.18 -1.41 16 22 C -0.12 -0.99 7.42 -25.83 -0.19 -1.18 16 23 C -0.12 -1.09 4.27 -90.87 -0.39 -1.48 16 24 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 25 C 0.54 6.26 5.63 -10.99 -0.06 6.20 16 26 N -0.85 -7.29 8.87 31.22 0.28 -7.01 16 27 O -0.53 -8.37 16.16 5.55 0.09 -8.28 16 28 C 0.15 2.98 5.59 -3.71 -0.02 2.96 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.09 2.22 6.02 -51.93 -0.31 1.91 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 4.24 7.69 -40.82 -0.31 3.93 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.46 6.77 -51.92 -0.35 1.10 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.80 7.70 -51.93 -0.40 0.40 16 43 H 0.40 2.35 8.83 -40.82 -0.36 1.99 16 44 H 0.40 3.26 8.93 -40.82 -0.36 2.90 16 45 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 46 H 0.05 0.91 7.12 -51.93 -0.37 0.54 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -33.94 364.96 -8.89 -42.82 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.52 Total: 6.36 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.07 Total: 2.44 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.06 Total: -55.63 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.17 Total: -17.38 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.94 -8.89 -42.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331389484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.005 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds