Wall clock time and date at job start Fri Apr 10 2020 18:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48500 * 109.47395 * 239.99920 * 3 2 1 5 5 H 1.48504 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47188 * 119.99517 * 3 2 1 7 7 C 1.38812 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00036 * 200.42934 * 7 2 1 9 9 N 1.36938 * 120.00058 * 20.43656 * 7 2 1 10 10 C 1.47201 * 120.81625 * 25.92312 * 9 7 2 11 11 C 1.53191 * 108.85394 * 126.33988 * 10 9 7 12 12 C 1.53036 * 109.31346 * 54.65590 * 11 10 9 13 13 C 1.53043 * 109.53877 * 298.63600 * 12 11 10 14 14 H 1.09004 * 109.49134 * 301.41238 * 13 12 11 15 15 C 1.52997 * 109.49966 * 181.31389 * 13 12 11 16 16 N 1.46498 * 109.46932 * 175.15655 * 15 13 12 17 17 C 1.34777 * 119.99811 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00086 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99964 * 180.02562 * 17 16 15 20 20 H 1.09003 * 112.85163 * 25.74978 * 19 17 16 21 21 C 1.53778 * 113.61525 * 156.94360 * 19 17 16 22 22 C 1.53784 * 87.08113 * 139.97851 * 21 19 17 23 23 C 1.53777 * 113.61464 * 254.55008 * 19 17 16 24 24 H 1.09003 * 113.61651 * 105.46554 * 23 19 17 25 25 C 1.50699 * 113.61427 * 334.56994 * 23 19 17 26 26 N 1.34777 * 120.00117 * 98.20721 * 25 23 19 27 27 O 1.21284 * 119.99880 * 278.20714 * 25 23 19 28 28 C 1.46925 * 120.63087 * 205.78514 * 9 7 2 29 29 H 0.96998 * 119.99831 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.53202 * 6.54004 * 10 9 7 31 31 H 1.09001 * 109.68271 * 246.23596 * 10 9 7 32 32 H 1.08997 * 109.50221 * 294.70113 * 11 10 9 33 33 H 1.09009 * 109.49412 * 174.60368 * 11 10 9 34 34 H 1.08996 * 109.46354 * 178.61487 * 12 11 10 35 35 H 1.09001 * 109.44862 * 58.64513 * 12 11 10 36 36 H 1.08999 * 109.47261 * 295.16215 * 15 13 12 37 37 H 1.09002 * 109.47098 * 55.16115 * 15 13 12 38 38 H 0.97001 * 120.00430 * 0.02562 * 16 15 13 39 39 H 1.08997 * 113.61682 * 254.53178 * 21 19 17 40 40 H 1.09008 * 113.61874 * 25.34925 * 21 19 17 41 41 H 1.08997 * 113.61043 * 89.11914 * 22 21 19 42 42 H 1.09001 * 113.61394 * 219.93255 * 22 21 19 43 43 H 0.96998 * 120.00350 * 0.02562 * 26 25 23 44 44 H 0.97008 * 119.99843 * 180.02562 * 26 25 23 45 45 H 1.09010 * 109.58550 * 113.81652 * 28 9 7 46 46 H 1.08996 * 109.58747 * 353.53968 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0393 -1.2314 0.3270 9 7 1.3902 -2.3509 -0.4130 10 6 0.2622 -2.3010 -1.3575 11 6 0.5685 -3.2211 -2.5434 12 6 0.8908 -4.6245 -2.0252 13 6 2.1283 -4.5666 -1.1267 14 1 2.9694 -4.1642 -1.6914 15 6 2.4692 -5.9749 -0.6355 16 7 3.7183 -5.9365 0.1289 17 6 4.2171 -7.0693 0.6622 18 8 3.6321 -8.1206 0.5089 19 6 5.5018 -7.0297 1.4490 20 1 5.6950 -6.0541 1.8953 21 6 5.6567 -8.1996 2.4350 22 6 7.1376 -8.2476 2.0233 23 6 6.7071 -7.6094 0.6901 24 1 7.3990 -6.8507 0.3246 25 6 6.3283 -8.6154 -0.3661 26 7 6.2376 -8.2362 -1.6562 27 8 6.1051 -9.7663 -0.0551 28 6 1.8398 -3.6617 0.0753 29 1 -0.4850 0.8400 -0.0004 30 1 0.1293 -1.2791 -1.7127 31 1 -0.6480 -2.6363 -0.8603 32 1 1.4241 -2.8314 -3.0948 33 1 -0.2991 -3.2668 -3.2019 34 1 1.0850 -5.2873 -2.8684 35 1 0.0440 -5.0035 -1.4529 36 1 1.6645 -6.3422 0.0015 37 1 2.5873 -6.6396 -1.4913 38 1 4.1865 -5.0958 0.2512 39 1 5.5018 -7.9166 3.4761 40 1 5.0939 -9.0885 2.1498 41 1 7.7793 -7.6051 2.6262 42 1 7.5294 -9.2594 1.9194 43 1 6.4164 -7.3159 -1.9050 44 1 5.9934 -8.8837 -2.3360 45 1 1.0596 -4.1096 0.6909 46 1 2.7471 -3.5397 0.6669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331389484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:58 Heat of formation + Delta-G solvation = -72.758897 kcal Electronic energy + Delta-G solvation = -26391.156329 eV Core-core repulsion = 22701.144386 eV Total energy + Delta-G solvation = -3690.011943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.02252 -40.18269 -39.25944 -37.78862 -36.18401 -34.66183 -34.58082 -32.29994 -31.97683 -28.38400 -27.63037 -27.21497 -26.05261 -23.81898 -22.96723 -22.49849 -21.70672 -20.69333 -20.03073 -18.83505 -18.48117 -18.07099 -17.20820 -16.92978 -16.71017 -16.62737 -16.14721 -15.70543 -15.44378 -15.23938 -15.10134 -14.91357 -14.50433 -14.32056 -14.01397 -13.75035 -13.68257 -13.62280 -13.01260 -12.90796 -12.83450 -12.44915 -12.28284 -12.22475 -11.96672 -11.90520 -11.81027 -11.57790 -11.41666 -11.32299 -11.09608 -10.91775 -10.63379 -10.59899 -10.49239 -10.03649 -8.69686 -7.85370 -5.27314 1.45214 1.49927 1.52841 1.59033 1.73774 2.22621 2.54046 2.63120 3.29255 3.42118 3.59266 3.61321 3.77488 3.83703 3.99974 4.02054 4.05645 4.15084 4.35426 4.40566 4.55639 4.59793 4.63896 4.74879 4.77408 4.87582 4.88473 4.91531 5.00823 5.06276 5.10808 5.11072 5.24416 5.33817 5.39417 5.45270 5.52853 5.58871 5.68604 5.77991 5.89951 6.39150 6.47853 6.60847 7.15700 7.29150 7.38457 7.88154 8.40727 9.21606 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.003216 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.069910 B = 8705.344951 C = 9451.610391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.273 1.273 7 C -0.261 4.261 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.171 3.829 11 C -0.128 4.128 12 C -0.099 4.099 13 C -0.096 4.096 14 H 0.083 0.917 15 C 0.139 3.861 16 N -0.711 5.711 17 C 0.508 3.492 18 O -0.576 6.576 19 C -0.116 4.116 20 H 0.158 0.842 21 C -0.129 4.129 22 C -0.108 4.108 23 C -0.119 4.119 24 H 0.146 0.854 25 C 0.524 3.476 26 N -0.840 5.840 27 O -0.580 6.580 28 C 0.152 3.848 29 H 0.248 0.752 30 H 0.051 0.949 31 H -0.011 1.011 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.414 0.586 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.129 0.871 42 H 0.065 0.935 43 H 0.415 0.585 44 H 0.403 0.597 45 H 0.000 1.000 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.692 -11.283 -2.157 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.793 3.207 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.199 1.199 7 C -0.391 4.391 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.045 3.955 11 C -0.167 4.167 12 C -0.137 4.137 13 C -0.117 4.117 14 H 0.102 0.898 15 C 0.014 3.986 16 N -0.363 5.363 17 C 0.295 3.705 18 O -0.455 6.455 19 C -0.137 4.137 20 H 0.175 0.825 21 C -0.167 4.167 22 C -0.145 4.145 23 C -0.141 4.141 24 H 0.164 0.836 25 C 0.309 3.691 26 N -0.403 5.403 27 O -0.459 6.459 28 C 0.026 3.974 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.007 0.993 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.251 0.749 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.147 0.853 42 H 0.084 0.916 43 H 0.246 0.754 44 H 0.233 0.767 45 H 0.018 0.982 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.056 -12.548 -1.882 19.690 hybrid contribution -0.406 1.489 -0.311 1.574 sum 14.650 -11.059 -2.193 18.486 Atomic orbital electron populations 1.70229 1.06919 1.25846 1.55349 1.25747 0.95836 1.01602 1.01651 0.85378 0.77576 0.79255 0.78485 1.20248 1.22723 1.19859 1.19546 0.94344 0.86343 1.38853 0.90623 1.44385 1.37491 1.01605 1.49694 1.20677 0.87860 0.98107 0.88829 1.21975 1.00992 0.95885 0.97877 1.21349 0.96827 0.96612 0.98905 1.21687 0.99049 0.93309 0.97633 0.89837 1.21189 0.85778 0.96494 0.95106 1.46050 1.25333 1.10867 1.54075 1.21041 0.87064 0.83129 0.79240 1.90739 1.61997 1.31883 1.60908 1.22907 0.90154 1.03310 0.97364 0.82490 1.22872 0.97750 0.96835 0.99265 1.22808 0.96165 1.01966 0.93587 1.22478 0.98420 0.98334 0.94881 0.83579 1.20506 0.75403 0.88650 0.84526 1.43724 1.72385 1.16175 1.08000 1.90707 1.50743 1.22296 1.82172 1.21022 0.97068 0.85508 0.93753 0.94296 0.93034 0.99252 0.92472 0.91468 0.90263 0.93180 0.93487 0.91438 0.74929 0.89160 0.92085 0.85313 0.91637 0.75417 0.76669 0.98231 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.64 11.27 21.65 0.24 -54.39 16 2 C -0.05 -2.86 4.85 84.86 0.41 -2.45 16 3 Si 0.96 42.90 29.60 68.60 2.03 44.93 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.26 -13.50 9.59 84.03 0.81 -12.69 16 8 H 0.08 3.67 7.90 -2.91 -0.02 3.65 16 9 N -0.61 -28.80 3.01 -698.39 -2.10 -30.90 16 10 C 0.17 8.00 5.36 86.31 0.46 8.46 16 11 C -0.13 -4.48 6.08 30.67 0.19 -4.29 16 12 C -0.10 -2.91 5.17 30.62 0.16 -2.75 16 13 C -0.10 -2.75 2.38 -10.72 -0.03 -2.78 16 14 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 15 C 0.14 3.58 5.07 86.38 0.44 4.01 16 16 N -0.71 -15.44 5.33 -463.06 -2.47 -17.91 16 17 C 0.51 12.48 6.43 87.66 0.56 13.04 16 18 O -0.58 -19.98 15.19 -3.05 -0.05 -20.03 16 19 C -0.12 -1.91 4.09 -11.02 -0.05 -1.96 16 20 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 21 C -0.13 -2.54 7.14 31.12 0.22 -2.32 16 22 C -0.11 -1.53 7.42 31.18 0.23 -1.30 16 23 C -0.12 -1.71 4.27 -10.96 -0.05 -1.76 16 24 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 25 C 0.52 11.59 5.63 87.66 0.49 12.09 16 26 N -0.84 -12.77 8.87 -173.53 -1.54 -14.31 16 27 O -0.58 -18.92 16.16 -3.04 -0.05 -18.97 16 28 C 0.15 5.69 5.59 86.36 0.48 6.17 16 29 H 0.25 14.12 8.31 -92.71 -0.77 13.34 16 30 H 0.05 2.75 6.02 -2.38 -0.01 2.74 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.41 7.15 7.69 -92.71 -0.71 6.43 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.77 6.77 -2.38 -0.02 1.76 16 41 H 0.13 0.90 8.14 -2.39 -0.02 0.89 16 42 H 0.06 1.20 7.70 -2.39 -0.02 1.18 16 43 H 0.41 3.57 8.83 -92.71 -0.82 2.75 16 44 H 0.40 6.08 8.93 -92.70 -0.83 5.25 16 45 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 46 H 0.06 2.13 7.12 -2.39 -0.02 2.11 16 Total: -1.00 -78.23 364.96 -0.94 -79.18 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -1.35 Total: 20.94 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 4.34 Total: 11.47 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -5.87 Total: -117.51 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.10 Total: -39.00 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -78.23 -0.94 -79.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331389484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.418 kcal (2) G-P(sol) polarization free energy of solvation -78.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds