Wall clock time and date at job start Fri Apr 10 2020 18:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99743 * 2 1 4 4 H 1.48499 * 109.46912 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46951 * 299.99516 * 3 2 1 6 6 H 1.48502 * 109.47401 * 59.99997 * 3 2 1 7 7 C 1.38808 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99578 * 197.37041 * 7 2 1 9 9 N 1.36932 * 120.00110 * 17.36874 * 7 2 1 10 10 C 1.46931 * 120.62929 * 27.67914 * 9 7 2 11 11 C 1.53190 * 108.77543 * 126.39199 * 10 9 7 12 12 C 1.53037 * 109.31469 * 54.63245 * 11 10 9 13 13 C 1.53041 * 109.54045 * 298.63474 * 12 11 10 14 14 H 1.09007 * 109.49596 * 301.38560 * 13 12 11 15 15 C 1.53001 * 109.50050 * 181.31860 * 13 12 11 16 16 N 1.46495 * 109.47137 * 175.06502 * 15 13 12 17 17 C 1.34774 * 119.99943 * 179.97438 * 16 15 13 18 18 O 1.21273 * 120.00168 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00051 * 179.97438 * 17 16 15 20 20 H 1.08996 * 112.91176 * 308.25824 * 19 17 16 21 21 C 1.53784 * 113.61362 * 79.50692 * 19 17 16 22 22 C 1.53782 * 87.17378 * 140.02334 * 21 19 17 23 23 C 1.53781 * 87.08119 * 334.52503 * 22 21 19 24 24 H 1.08994 * 113.61549 * 270.88567 * 23 22 21 25 25 C 1.50702 * 113.61319 * 140.06448 * 23 22 21 26 26 N 1.34769 * 119.99782 * 79.50987 * 25 23 22 27 27 O 1.21276 * 119.99805 * 259.50346 * 25 23 22 28 28 C 1.46936 * 120.60712 * 207.65213 * 9 7 2 29 29 H 0.97004 * 120.00158 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.58389 * 6.59721 * 10 9 7 31 31 H 1.09002 * 109.58221 * 246.17372 * 10 9 7 32 32 H 1.09004 * 109.49307 * 294.67717 * 11 10 9 33 33 H 1.08998 * 109.52287 * 174.60227 * 11 10 9 34 34 H 1.09008 * 109.45887 * 178.61608 * 12 11 10 35 35 H 1.08991 * 109.46146 * 58.66014 * 12 11 10 36 36 H 1.09000 * 109.46951 * 55.06360 * 15 13 12 37 37 H 1.09000 * 109.46663 * 295.06778 * 15 13 12 38 38 H 0.96998 * 120.00209 * 0.02562 * 16 15 13 39 39 H 1.09004 * 113.61412 * 25.43129 * 21 19 17 40 40 H 1.09005 * 113.61312 * 254.61676 * 21 19 17 41 41 H 1.09000 * 113.61525 * 89.07432 * 22 21 19 42 42 H 1.08996 * 113.60960 * 219.89431 * 22 21 19 43 43 H 0.97002 * 120.00577 * 359.97438 * 26 25 23 44 44 H 0.97001 * 120.00155 * 179.97438 * 26 25 23 45 45 H 1.08996 * 109.55891 * 113.80454 * 28 9 7 46 46 H 1.09003 * 109.61225 * 353.38600 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2232 0.2798 9 7 1.3724 -2.3611 -0.3529 10 6 0.2280 -2.3348 -1.2741 11 6 0.5013 -3.3050 -2.4277 12 6 0.8193 -4.6900 -1.8598 13 6 2.0748 -4.6100 -0.9883 14 1 2.9089 -4.2404 -1.5850 15 6 2.4108 -6.0013 -0.4476 16 7 3.6762 -5.9467 0.2885 17 6 4.1733 -7.0626 0.8577 18 8 3.5734 -8.1120 0.7601 19 6 5.4754 -7.0065 1.6144 20 1 6.2801 -6.5466 1.0409 21 6 5.3360 -6.4454 3.0394 22 6 6.3391 -7.5243 3.4806 23 6 5.8700 -8.3448 2.2675 24 1 5.0206 -8.9935 2.4813 25 6 6.9880 -9.0605 1.5541 26 7 7.4747 -10.2147 2.0513 27 8 7.4495 -8.5978 0.5324 28 6 1.8202 -3.6545 0.1816 29 1 -0.4850 0.8401 0.0004 30 1 0.0986 -1.3266 -1.6673 31 1 -0.6742 -2.6414 -0.7448 32 1 1.3500 -2.9471 -3.0107 33 1 -0.3790 -3.3674 -3.0674 34 1 0.9900 -5.3881 -2.6794 35 1 -0.0198 -5.0366 -1.2567 36 1 2.5034 -6.7012 -1.2781 37 1 1.6158 -6.3331 0.2203 38 1 4.1558 -5.1072 0.3669 39 1 4.3405 -6.5748 3.4642 40 1 5.7131 -5.4283 3.1470 41 1 7.3795 -7.2056 3.4163 42 1 6.0949 -7.9814 4.4394 43 1 7.1057 -10.5846 2.8685 44 1 8.1940 -10.6756 1.5918 45 1 1.0481 -4.0683 0.8301 46 1 2.7411 -3.5170 0.7483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331389486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:03 Heat of formation + Delta-G solvation = -52.739925 kcal Electronic energy + Delta-G solvation = -25931.336558 eV Core-core repulsion = 22242.192703 eV Total energy + Delta-G solvation = -3689.143855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.93703 -39.22371 -37.91832 -37.02287 -34.75728 -33.88969 -32.97568 -30.50154 -30.40459 -27.40944 -27.02786 -25.32408 -24.80699 -22.15491 -21.77968 -21.04678 -20.56324 -19.56712 -19.01316 -18.01403 -17.51565 -16.75207 -16.53598 -15.81586 -15.34630 -14.90205 -14.81983 -14.74033 -14.24823 -14.09488 -13.69669 -13.43059 -13.15648 -12.90819 -12.79040 -12.44802 -12.33250 -12.16513 -12.04952 -11.78220 -11.29175 -11.23840 -11.02701 -10.85112 -10.72409 -10.47541 -10.21266 -10.17515 -10.04555 -9.97424 -9.93729 -9.75221 -9.47878 -9.41577 -8.87232 -8.47714 -6.68654 -5.80157 -3.22587 2.38663 2.70994 3.14421 3.35666 3.43843 3.44818 3.45575 4.04837 4.22977 4.40567 4.47153 4.53103 4.87477 5.02669 5.15650 5.30912 5.34336 5.37946 5.42963 5.45446 5.48677 5.60653 5.62896 5.67761 5.84433 5.98076 6.01525 6.04715 6.25042 6.34475 6.38927 6.48597 6.56091 6.59756 6.71282 6.78507 6.86644 6.96999 7.03489 7.39937 7.64778 7.67240 7.77881 8.00852 8.33173 8.43220 9.19655 9.83414 10.40115 11.28134 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.003007 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.101541 B = 9309.508120 C =10278.477015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.127 3.873 16 N -0.719 5.719 17 C 0.524 3.476 18 O -0.550 6.550 19 C -0.116 4.116 20 H 0.126 0.874 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.117 4.117 24 H 0.128 0.872 25 C 0.530 3.470 26 N -0.856 5.856 27 O -0.541 6.541 28 C 0.155 3.845 29 H 0.253 0.747 30 H 0.087 0.913 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.404 0.596 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.402 0.598 44 H 0.400 0.600 45 H 0.018 0.982 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.164 -17.050 5.945 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.370 5.370 17 C 0.310 3.690 18 O -0.428 6.428 19 C -0.137 4.137 20 H 0.144 0.856 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.139 4.139 24 H 0.146 0.854 25 C 0.315 3.685 26 N -0.419 5.419 27 O -0.418 6.418 28 C 0.028 3.972 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.239 0.761 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.230 0.770 44 H 0.230 0.770 45 H 0.036 0.964 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.776 -17.175 5.229 20.939 hybrid contribution 0.683 0.809 0.139 1.068 sum 11.460 -16.366 5.368 20.688 Atomic orbital electron populations 1.70051 1.05281 1.25382 1.53887 1.25034 0.95268 0.98410 1.00961 0.86248 0.79369 0.84020 0.77273 1.20247 1.21578 1.21756 1.19203 0.92668 0.84868 1.41459 0.91681 1.44054 1.35869 1.01204 1.50286 1.20803 0.88515 0.98418 0.87957 1.22171 1.00098 0.95956 0.99871 1.21338 0.96731 0.97724 0.97973 1.21957 0.98836 0.93624 0.99455 0.90859 1.21458 0.84859 0.97945 0.95441 1.46045 1.24845 1.11610 1.54498 1.20292 0.86350 0.83659 0.78692 1.90656 1.61334 1.30035 1.60791 1.22719 0.96930 0.97314 0.96764 0.85628 1.22835 1.00548 0.99648 0.93137 1.22821 1.00095 0.96470 0.96685 1.22738 0.97920 0.96151 0.97067 0.85443 1.20479 0.83161 0.80548 0.84356 1.43844 1.41409 1.25922 1.30684 1.90744 1.60451 1.66248 1.24329 1.20887 0.97404 0.86788 0.92094 0.93686 0.89527 0.96467 0.92755 0.93199 0.93462 0.92511 0.92078 0.91658 0.76122 0.88992 0.89582 0.89334 0.89948 0.77025 0.77001 0.96409 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.19 55.49 0.62 -25.32 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 8 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.45 3.00 -172.32 -0.52 -14.97 16 10 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 11 C -0.14 -2.68 6.08 -26.61 -0.16 -2.85 16 12 C -0.10 -1.66 5.17 -26.69 -0.14 -1.79 16 13 C -0.12 -1.96 2.37 -90.50 -0.21 -2.18 16 14 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 15 C 0.13 1.90 5.07 -4.04 -0.02 1.88 16 16 N -0.72 -9.88 5.33 -60.30 -0.32 -10.20 16 17 C 0.52 7.43 7.35 -10.99 -0.08 7.35 16 18 O -0.55 -9.53 15.94 5.56 0.09 -9.44 16 19 C -0.12 -1.26 3.47 -90.81 -0.31 -1.58 16 20 H 0.13 1.41 7.48 -51.93 -0.39 1.02 16 21 C -0.12 -1.03 7.62 -25.92 -0.20 -1.22 16 22 C -0.12 -0.82 7.63 -25.92 -0.20 -1.02 16 23 C -0.12 -1.10 3.46 -90.81 -0.31 -1.41 16 24 H 0.13 1.21 7.48 -51.93 -0.39 0.82 16 25 C 0.53 5.62 7.63 -10.99 -0.08 5.53 16 26 N -0.86 -5.38 8.87 31.22 0.28 -5.11 16 27 O -0.54 -8.16 16.77 5.56 0.09 -8.07 16 28 C 0.16 3.09 5.60 -3.71 -0.02 3.07 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.09 2.30 6.03 -51.93 -0.31 1.98 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.40 5.01 7.70 -40.82 -0.31 4.70 16 39 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.40 1.30 8.83 -40.82 -0.36 0.94 16 44 H 0.40 2.16 8.93 -40.82 -0.36 1.79 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.05 0.96 7.14 -51.93 -0.37 0.59 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -34.40 368.80 -8.76 -43.17 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.54 Total: 5.23 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.99 Total: 2.81 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.06 Total: -55.59 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.18 Total: -17.51 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.40 -8.76 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331389486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.573 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds