Wall clock time and date at job start Fri Apr 10 2020 18:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99743 * 2 1 4 4 H 1.48499 * 109.46912 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46951 * 299.99516 * 3 2 1 6 6 H 1.48502 * 109.47401 * 59.99997 * 3 2 1 7 7 C 1.38808 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99578 * 197.37041 * 7 2 1 9 9 N 1.36932 * 120.00110 * 17.36874 * 7 2 1 10 10 C 1.46931 * 120.62929 * 27.67914 * 9 7 2 11 11 C 1.53190 * 108.77543 * 126.39199 * 10 9 7 12 12 C 1.53037 * 109.31469 * 54.63245 * 11 10 9 13 13 C 1.53041 * 109.54045 * 298.63474 * 12 11 10 14 14 H 1.09007 * 109.49596 * 301.38560 * 13 12 11 15 15 C 1.53001 * 109.50050 * 181.31860 * 13 12 11 16 16 N 1.46495 * 109.47137 * 175.06502 * 15 13 12 17 17 C 1.34774 * 119.99943 * 179.97438 * 16 15 13 18 18 O 1.21273 * 120.00168 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00051 * 179.97438 * 17 16 15 20 20 H 1.08996 * 112.91176 * 308.25824 * 19 17 16 21 21 C 1.53784 * 113.61362 * 79.50692 * 19 17 16 22 22 C 1.53782 * 87.17378 * 140.02334 * 21 19 17 23 23 C 1.53781 * 87.08119 * 334.52503 * 22 21 19 24 24 H 1.08994 * 113.61549 * 270.88567 * 23 22 21 25 25 C 1.50702 * 113.61319 * 140.06448 * 23 22 21 26 26 N 1.34769 * 119.99782 * 79.50987 * 25 23 22 27 27 O 1.21276 * 119.99805 * 259.50346 * 25 23 22 28 28 C 1.46936 * 120.60712 * 207.65213 * 9 7 2 29 29 H 0.97004 * 120.00158 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.58389 * 6.59721 * 10 9 7 31 31 H 1.09002 * 109.58221 * 246.17372 * 10 9 7 32 32 H 1.09004 * 109.49307 * 294.67717 * 11 10 9 33 33 H 1.08998 * 109.52287 * 174.60227 * 11 10 9 34 34 H 1.09008 * 109.45887 * 178.61608 * 12 11 10 35 35 H 1.08991 * 109.46146 * 58.66014 * 12 11 10 36 36 H 1.09000 * 109.46951 * 55.06360 * 15 13 12 37 37 H 1.09000 * 109.46663 * 295.06778 * 15 13 12 38 38 H 0.96998 * 120.00209 * 0.02562 * 16 15 13 39 39 H 1.09004 * 113.61412 * 25.43129 * 21 19 17 40 40 H 1.09005 * 113.61312 * 254.61676 * 21 19 17 41 41 H 1.09000 * 113.61525 * 89.07432 * 22 21 19 42 42 H 1.08996 * 113.60960 * 219.89431 * 22 21 19 43 43 H 0.97002 * 120.00577 * 359.97438 * 26 25 23 44 44 H 0.97001 * 120.00155 * 179.97438 * 26 25 23 45 45 H 1.08996 * 109.55891 * 113.80454 * 28 9 7 46 46 H 1.09003 * 109.61225 * 353.38600 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2232 0.2798 9 7 1.3724 -2.3611 -0.3529 10 6 0.2280 -2.3348 -1.2741 11 6 0.5013 -3.3050 -2.4277 12 6 0.8193 -4.6900 -1.8598 13 6 2.0748 -4.6100 -0.9883 14 1 2.9089 -4.2404 -1.5850 15 6 2.4108 -6.0013 -0.4476 16 7 3.6762 -5.9467 0.2885 17 6 4.1733 -7.0626 0.8577 18 8 3.5734 -8.1120 0.7601 19 6 5.4754 -7.0065 1.6144 20 1 6.2801 -6.5466 1.0409 21 6 5.3360 -6.4454 3.0394 22 6 6.3391 -7.5243 3.4806 23 6 5.8700 -8.3448 2.2675 24 1 5.0206 -8.9935 2.4813 25 6 6.9880 -9.0605 1.5541 26 7 7.4747 -10.2147 2.0513 27 8 7.4495 -8.5978 0.5324 28 6 1.8202 -3.6545 0.1816 29 1 -0.4850 0.8401 0.0004 30 1 0.0986 -1.3266 -1.6673 31 1 -0.6742 -2.6414 -0.7448 32 1 1.3500 -2.9471 -3.0107 33 1 -0.3790 -3.3674 -3.0674 34 1 0.9900 -5.3881 -2.6794 35 1 -0.0198 -5.0366 -1.2567 36 1 2.5034 -6.7012 -1.2781 37 1 1.6158 -6.3331 0.2203 38 1 4.1558 -5.1072 0.3669 39 1 4.3405 -6.5748 3.4642 40 1 5.7131 -5.4283 3.1470 41 1 7.3795 -7.2056 3.4163 42 1 6.0949 -7.9814 4.4394 43 1 7.1057 -10.5846 2.8685 44 1 8.1940 -10.6756 1.5918 45 1 1.0481 -4.0683 0.8301 46 1 2.7411 -3.5170 0.7483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331389486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:02 Heat of formation + Delta-G solvation = -78.419696 kcal Electronic energy + Delta-G solvation = -25932.450116 eV Core-core repulsion = 22242.192703 eV Total energy + Delta-G solvation = -3690.257413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.80726 -40.29867 -39.35177 -37.96088 -36.21792 -34.67621 -34.58489 -32.29986 -31.97994 -28.42456 -27.74128 -27.22640 -26.06066 -23.83014 -22.72785 -22.37128 -21.65010 -20.73199 -20.19829 -18.87238 -18.63699 -18.23623 -17.47230 -16.95707 -16.82986 -16.45730 -15.91886 -15.64000 -15.60501 -15.27159 -15.15000 -15.00027 -14.51074 -14.03204 -13.94004 -13.79542 -13.73138 -13.58447 -13.00139 -12.96261 -12.87859 -12.54771 -12.49168 -12.23212 -12.05945 -11.94502 -11.82053 -11.58311 -11.48956 -11.33533 -11.10063 -10.86723 -10.69389 -10.64039 -10.52929 -10.05967 -8.67366 -7.85841 -5.31052 1.47010 1.49600 1.59285 1.59520 1.63038 2.20620 2.52097 2.67746 3.28774 3.29106 3.53899 3.59959 3.73686 3.79723 3.98999 4.01279 4.05088 4.12413 4.32138 4.40228 4.57493 4.61593 4.67124 4.69585 4.76963 4.87233 4.88960 4.91286 5.00483 5.02556 5.04885 5.10356 5.23488 5.32925 5.36862 5.39962 5.50493 5.58187 5.67825 5.78548 5.90117 6.40017 6.45649 6.55662 7.15981 7.22708 7.34928 7.87449 8.39455 9.20696 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.003007 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.101541 B = 9309.508120 C =10278.477015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.259 4.259 8 H 0.071 0.929 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.101 4.101 14 H 0.073 0.927 15 C 0.137 3.863 16 N -0.717 5.717 17 C 0.521 3.479 18 O -0.585 6.585 19 C -0.123 4.123 20 H 0.122 0.878 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.118 4.118 24 H 0.127 0.873 25 C 0.524 3.476 26 N -0.834 5.834 27 O -0.594 6.594 28 C 0.155 3.845 29 H 0.249 0.751 30 H 0.052 0.948 31 H -0.006 1.006 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.411 0.589 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.419 0.581 44 H 0.406 0.594 45 H 0.008 0.992 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.864 -18.262 6.692 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.389 4.389 8 H 0.089 0.911 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.122 4.122 14 H 0.092 0.908 15 C 0.013 3.987 16 N -0.368 5.368 17 C 0.309 3.691 18 O -0.465 6.465 19 C -0.145 4.145 20 H 0.139 0.861 21 C -0.157 4.157 22 C -0.141 4.141 23 C -0.139 4.139 24 H 0.145 0.855 25 C 0.310 3.690 26 N -0.397 5.397 27 O -0.475 6.475 28 C 0.029 3.971 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.012 0.988 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.247 0.753 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.128 0.872 43 H 0.250 0.750 44 H 0.238 0.762 45 H 0.025 0.975 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.507 -18.438 6.017 23.078 hybrid contribution 0.136 1.111 -0.058 1.120 sum 12.642 -17.327 5.959 22.262 Atomic orbital electron populations 1.70206 1.06764 1.25687 1.55647 1.25790 0.95987 1.01529 1.01505 0.85237 0.78815 0.79973 0.76606 1.18776 1.21999 1.22068 1.19574 0.93083 0.85928 1.40297 0.91114 1.44323 1.35832 1.02178 1.50940 1.20635 0.87738 0.97784 0.89158 1.22002 1.00891 0.95952 0.98086 1.21335 0.96592 0.96736 0.98856 1.21722 0.98938 0.93548 0.97944 0.90849 1.21250 0.85333 0.96610 0.95516 1.46039 1.24446 1.12074 1.54208 1.20885 0.87081 0.82952 0.78193 1.90632 1.62615 1.31181 1.62101 1.22825 0.94817 0.99213 0.97645 0.86060 1.22856 1.01070 1.00779 0.90979 1.22796 0.99929 0.94778 0.96630 1.22780 0.97594 0.95586 0.97958 0.85514 1.20737 0.83217 0.81272 0.83772 1.43677 1.40734 1.24415 1.30880 1.90721 1.62307 1.67860 1.26611 1.20998 0.97161 0.85573 0.93336 0.94225 0.92984 0.98829 0.92969 0.91259 0.90467 0.92517 0.91651 0.92269 0.75311 0.89263 0.88545 0.88644 0.87231 0.74994 0.76243 0.97453 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.40 11.19 21.65 0.24 -55.16 16 2 C -0.05 -2.93 4.91 84.86 0.42 -2.51 16 3 Si 0.97 44.33 29.59 68.60 2.03 46.36 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.26 -13.89 9.58 84.03 0.81 -13.09 16 8 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 9 N -0.61 -29.98 3.00 -699.09 -2.09 -32.07 16 10 C 0.17 8.32 5.31 86.36 0.46 8.77 16 11 C -0.13 -4.80 6.08 30.67 0.19 -4.62 16 12 C -0.10 -3.05 5.17 30.62 0.16 -2.89 16 13 C -0.10 -3.21 2.37 -10.72 -0.03 -3.24 16 14 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 15 C 0.14 3.92 5.07 86.38 0.44 4.36 16 16 N -0.72 -18.93 5.33 -463.08 -2.47 -21.40 16 17 C 0.52 14.37 7.35 87.66 0.64 15.02 16 18 O -0.58 -19.97 15.94 -3.01 -0.05 -20.02 16 19 C -0.12 -2.56 3.47 -10.92 -0.04 -2.60 16 20 H 0.12 2.66 7.48 -2.39 -0.02 2.64 16 21 C -0.12 -1.72 7.62 31.12 0.24 -1.48 16 22 C -0.10 -1.09 7.63 31.12 0.24 -0.85 16 23 C -0.12 -2.01 3.46 -10.92 -0.04 -2.04 16 24 H 0.13 2.21 7.48 -2.39 -0.02 2.19 16 25 C 0.52 10.48 7.63 87.66 0.67 11.15 16 26 N -0.83 -8.85 8.87 -173.54 -1.54 -10.39 16 27 O -0.59 -17.79 16.77 -3.02 -0.05 -17.84 16 28 C 0.15 6.10 5.60 86.36 0.48 6.59 16 29 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.05 2.85 6.03 -2.39 -0.01 2.84 16 31 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 34 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.41 9.70 7.70 -92.71 -0.71 8.99 16 39 H 0.09 1.37 8.09 -2.38 -0.02 1.35 16 40 H 0.10 1.20 8.14 -2.38 -0.02 1.19 16 41 H 0.10 0.93 8.09 -2.39 -0.02 0.91 16 42 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.42 1.60 8.83 -92.71 -0.82 0.78 16 44 H 0.41 3.66 8.93 -92.71 -0.83 2.83 16 45 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.06 2.17 7.14 -2.39 -0.02 2.16 16 Total: -1.00 -76.18 368.80 -0.65 -76.82 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -1.35 Total: 21.13 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 4.63 Total: 12.56 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -5.86 Total: -119.02 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.10 Total: -37.85 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -76.18 -0.65 -76.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331389486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.596 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds