Wall clock time and date at job start Fri Apr 10 2020 18:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99407 * 2 1 4 4 H 1.48497 * 109.47075 * 240.00394 * 3 2 1 5 5 H 1.48494 * 109.47470 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46734 * 120.00597 * 3 2 1 7 7 C 1.38808 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99695 * 163.06901 * 7 2 1 9 9 N 1.36934 * 119.99880 * 343.07221 * 7 2 1 10 10 C 1.46923 * 120.63195 * 331.83178 * 9 7 2 11 11 C 1.53188 * 108.77636 * 233.63464 * 10 9 7 12 12 C 1.53048 * 109.31236 * 305.36245 * 11 10 9 13 13 C 1.53002 * 109.45902 * 181.38495 * 12 11 10 14 14 N 1.46503 * 109.47029 * 174.97418 * 13 12 11 15 15 C 1.34770 * 119.99653 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00677 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99512 * 180.02562 * 15 14 13 18 18 H 1.08996 * 110.41751 * 39.15860 * 17 15 14 19 19 C 1.54912 * 110.37012 * 276.86401 * 17 15 14 20 20 C 1.55399 * 101.66838 * 204.24184 * 19 17 15 21 21 C 1.54316 * 102.82956 * 35.33290 * 20 19 17 22 22 N 1.47018 * 107.40684 * 337.98059 * 21 20 19 23 23 C 1.34774 * 125.65337 * 178.89890 * 22 21 20 24 24 O 1.21281 * 119.99737 * 359.97045 * 23 22 21 25 25 C 1.53037 * 109.52228 * 61.37402 * 12 11 10 26 26 C 1.46929 * 120.62721 * 151.86007 * 9 7 2 27 27 H 0.96998 * 120.00232 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58521 * 113.84992 * 10 9 7 29 29 H 1.08996 * 109.70147 * 353.49236 * 10 9 7 30 30 H 1.09001 * 109.49842 * 185.41454 * 11 10 9 31 31 H 1.08995 * 109.50002 * 65.31457 * 11 10 9 32 32 H 1.08993 * 109.45863 * 301.35977 * 12 11 10 33 33 H 1.09003 * 109.46668 * 54.97686 * 13 12 11 34 34 H 1.09002 * 109.47359 * 294.97678 * 13 12 11 35 35 H 0.96999 * 120.00015 * 0.02562 * 14 13 12 36 36 H 1.09002 * 111.00009 * 322.22837 * 19 17 15 37 37 H 1.08999 * 111.00558 * 86.03666 * 19 17 15 38 38 H 1.09005 * 110.69276 * 277.05035 * 20 19 17 39 39 H 1.09000 * 110.85519 * 153.70050 * 20 19 17 40 40 H 1.09007 * 109.88477 * 218.48022 * 21 20 19 41 41 H 1.09004 * 109.88266 * 97.47858 * 21 20 19 42 42 H 1.07997 * 120.00516 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.49827 * 58.58004 * 25 12 11 44 44 H 1.09007 * 109.49549 * 178.67466 * 25 12 11 45 45 H 1.09008 * 109.58461 * 246.15216 * 26 9 7 46 46 H 1.08995 * 109.58777 * 6.43456 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2221 -0.2729 9 7 1.3702 -2.3624 0.3442 10 6 0.2264 -2.3410 1.2662 11 6 0.4985 -3.3202 2.4123 12 6 0.8136 -4.7017 1.8338 13 6 1.0520 -5.6906 2.9766 14 7 1.2349 -7.0365 2.4275 15 6 1.4599 -8.0767 3.2544 16 8 1.5106 -7.8987 4.4530 17 6 1.6485 -9.4610 2.6895 18 1 2.2359 -9.4206 1.7723 19 6 0.2752 -10.1258 2.4214 20 6 0.6399 -11.6352 2.4800 21 6 1.7272 -11.6829 3.5740 22 7 2.3036 -10.3346 3.6802 23 6 3.2711 -9.9593 4.5402 24 8 3.7401 -10.7661 5.3148 25 6 2.0689 -4.6171 0.9625 26 6 1.8145 -3.6527 -0.2003 27 1 -0.4850 0.8400 0.0004 28 1 -0.6766 -2.6419 0.7351 29 1 0.0967 -1.3358 1.6674 30 1 -0.3819 -3.3857 3.0516 31 1 1.3482 -2.9685 2.9974 32 1 -0.0265 -5.0419 1.2284 33 1 0.1924 -5.6853 3.6469 34 1 1.9453 -5.3991 3.5290 35 1 1.1940 -7.1789 1.4689 36 1 -0.4421 -9.8687 3.2009 37 1 -0.1057 -9.8524 1.4374 38 1 1.0401 -11.9722 1.5237 39 1 -0.2248 -12.2324 2.7693 40 1 2.5025 -12.3966 3.2953 41 1 1.2825 -11.9720 4.5263 42 1 3.6287 -8.9403 4.5396 43 1 2.9036 -4.2529 1.5614 44 1 2.3063 -5.6058 0.5696 45 1 1.0409 -4.0606 -0.8510 46 1 2.7337 -3.5123 -0.7691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347553469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:16 Heat of formation + Delta-G solvation = -54.041042 kcal Electronic energy + Delta-G solvation = -25888.823211 eV Core-core repulsion = 22199.622935 eV Total energy + Delta-G solvation = -3689.200275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.88536 -39.13871 -37.93467 -37.24961 -35.11888 -33.02057 -31.94477 -31.04556 -30.14862 -29.62892 -26.90548 -24.90111 -24.02536 -22.64976 -22.21069 -21.34941 -20.99447 -20.13236 -19.18207 -17.92230 -17.64937 -16.77418 -16.02430 -15.87156 -15.50213 -15.25533 -14.83555 -14.46055 -14.21031 -13.90453 -13.76788 -13.59628 -13.50378 -13.37968 -13.21543 -12.64444 -12.41966 -12.41470 -12.27087 -11.91379 -11.80869 -11.41111 -11.33911 -11.03198 -10.75203 -10.58286 -10.37017 -10.29446 -10.25093 -10.04306 -9.92326 -9.62374 -9.52156 -9.18996 -9.02099 -8.50569 -6.71689 -5.83114 -3.25808 2.20222 2.44270 2.69494 3.11628 3.35777 3.41904 3.43151 3.93654 4.03504 4.34918 4.46295 4.54089 4.65768 4.82515 4.85675 5.00618 5.12837 5.23690 5.27259 5.28942 5.36249 5.40969 5.42923 5.53261 5.66172 5.76428 5.81902 5.85522 5.94916 6.04026 6.24524 6.26184 6.36571 6.53209 6.61089 6.68741 6.74221 6.90746 7.07164 7.28339 7.33340 7.60789 7.75451 7.86715 7.94082 8.41246 9.17428 9.80780 10.37048 11.25425 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.031522 B = 0.002495 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.058755 B =11219.016714 C =11482.304968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.122 3.878 14 N -0.716 5.716 15 C 0.501 3.499 16 O -0.534 6.534 17 C 0.111 3.889 18 H 0.104 0.896 19 C -0.122 4.122 20 C -0.130 4.130 21 C 0.102 3.898 22 N -0.611 5.611 23 C 0.525 3.475 24 O -0.555 6.555 25 C -0.127 4.127 26 C 0.145 3.855 27 H 0.255 0.745 28 H 0.017 0.983 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.403 0.597 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.134 0.866 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 -20.770 1.544 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.109 4.109 13 C -0.001 4.001 14 N -0.367 5.367 15 C 0.285 3.715 16 O -0.411 6.411 17 C 0.003 3.997 18 H 0.121 0.879 19 C -0.160 4.160 20 C -0.168 4.168 21 C -0.020 4.020 22 N -0.349 5.349 23 C 0.297 3.703 24 O -0.430 6.430 25 C -0.167 4.167 26 C 0.019 3.981 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.238 0.762 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.150 0.850 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.384 -20.861 2.902 21.066 hybrid contribution 0.286 0.969 -0.538 1.144 sum -0.098 -19.892 2.365 20.033 Atomic orbital electron populations 1.70014 1.05269 1.25676 1.53810 1.25042 0.95285 0.98429 1.00815 0.86375 0.78937 0.83332 0.78160 1.20878 1.21615 1.21004 1.19135 0.92529 0.84853 1.41874 0.91787 1.44036 1.35908 1.01524 1.50028 1.20754 0.88598 0.98175 0.87871 1.22185 1.00397 0.94597 1.00130 1.21319 0.98818 0.95404 0.95340 1.21654 1.01744 0.79834 0.96849 1.46082 1.72108 1.08078 1.10450 1.20600 0.77290 0.86294 0.87274 1.90759 1.50303 1.85094 1.14918 1.21971 0.96194 0.88748 0.92743 0.87866 1.22821 0.94390 0.94995 1.03810 1.22697 0.98746 0.96121 0.99186 1.21946 0.96034 0.84498 0.99541 1.48798 1.38478 1.10558 1.37088 1.22372 0.77012 0.93279 0.77635 1.90690 1.57561 1.55929 1.38797 1.22084 0.96995 0.98703 0.98884 1.20885 0.97548 0.87045 0.92652 0.93548 0.96454 0.89402 0.93051 0.92359 0.91226 0.91596 0.91371 0.76246 0.89775 0.88641 0.90001 0.89408 0.91020 0.91219 0.85028 0.92128 0.93500 0.96622 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 11.19 55.49 0.62 -24.96 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 8 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 9 N -0.59 -14.08 2.99 -172.33 -0.52 -14.59 16 10 C 0.17 3.86 5.30 -3.71 -0.02 3.84 16 11 C -0.13 -2.31 5.36 -26.61 -0.14 -2.45 16 12 C -0.09 -1.26 2.19 -90.57 -0.20 -1.46 16 13 C 0.12 1.49 5.06 -4.04 -0.02 1.47 16 14 N -0.72 -6.81 5.27 -60.29 -0.32 -7.13 16 15 C 0.50 5.24 6.66 -10.99 -0.07 5.17 16 16 O -0.53 -7.83 14.85 5.56 0.08 -7.75 16 17 C 0.11 0.83 3.62 -67.56 -0.24 0.58 16 18 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 19 C -0.12 -0.66 6.49 -24.45 -0.16 -0.82 16 20 C -0.13 -0.60 6.97 -24.77 -0.17 -0.77 16 21 C 0.10 0.80 6.86 -3.07 -0.02 0.78 16 22 N -0.61 -6.06 3.13 -169.40 -0.53 -6.59 16 23 C 0.53 6.68 10.76 54.05 0.58 7.27 16 24 O -0.55 -9.09 17.50 5.56 0.10 -8.99 16 25 C -0.13 -1.88 5.25 -26.61 -0.14 -2.02 16 26 C 0.15 2.77 6.52 -3.71 -0.02 2.75 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 2.86 7.65 -40.82 -0.31 2.54 16 36 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.13 1.53 7.13 -52.49 -0.37 1.16 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.54 7.15 -51.93 -0.37 0.17 16 45 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 46 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -33.72 365.54 -8.62 -42.33 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.67 Total: -1.49 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.86 Total: 7.43 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.74 Total: -53.27 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.18 Total: -16.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.72 -8.62 -42.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347553469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.708 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds