Wall clock time and date at job start Fri Apr 10 2020 18:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99407 * 2 1 4 4 H 1.48497 * 109.47075 * 240.00394 * 3 2 1 5 5 H 1.48494 * 109.47470 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46734 * 120.00597 * 3 2 1 7 7 C 1.38808 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99695 * 163.06901 * 7 2 1 9 9 N 1.36934 * 119.99880 * 343.07221 * 7 2 1 10 10 C 1.46923 * 120.63195 * 331.83178 * 9 7 2 11 11 C 1.53188 * 108.77636 * 233.63464 * 10 9 7 12 12 C 1.53048 * 109.31236 * 305.36245 * 11 10 9 13 13 C 1.53002 * 109.45902 * 181.38495 * 12 11 10 14 14 N 1.46503 * 109.47029 * 174.97418 * 13 12 11 15 15 C 1.34770 * 119.99653 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00677 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99512 * 180.02562 * 15 14 13 18 18 H 1.08996 * 110.41751 * 39.15860 * 17 15 14 19 19 C 1.54912 * 110.37012 * 276.86401 * 17 15 14 20 20 C 1.55399 * 101.66838 * 204.24184 * 19 17 15 21 21 C 1.54316 * 102.82956 * 35.33290 * 20 19 17 22 22 N 1.47018 * 107.40684 * 337.98059 * 21 20 19 23 23 C 1.34774 * 125.65337 * 178.89890 * 22 21 20 24 24 O 1.21281 * 119.99737 * 359.97045 * 23 22 21 25 25 C 1.53037 * 109.52228 * 61.37402 * 12 11 10 26 26 C 1.46929 * 120.62721 * 151.86007 * 9 7 2 27 27 H 0.96998 * 120.00232 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58521 * 113.84992 * 10 9 7 29 29 H 1.08996 * 109.70147 * 353.49236 * 10 9 7 30 30 H 1.09001 * 109.49842 * 185.41454 * 11 10 9 31 31 H 1.08995 * 109.50002 * 65.31457 * 11 10 9 32 32 H 1.08993 * 109.45863 * 301.35977 * 12 11 10 33 33 H 1.09003 * 109.46668 * 54.97686 * 13 12 11 34 34 H 1.09002 * 109.47359 * 294.97678 * 13 12 11 35 35 H 0.96999 * 120.00015 * 0.02562 * 14 13 12 36 36 H 1.09002 * 111.00009 * 322.22837 * 19 17 15 37 37 H 1.08999 * 111.00558 * 86.03666 * 19 17 15 38 38 H 1.09005 * 110.69276 * 277.05035 * 20 19 17 39 39 H 1.09000 * 110.85519 * 153.70050 * 20 19 17 40 40 H 1.09007 * 109.88477 * 218.48022 * 21 20 19 41 41 H 1.09004 * 109.88266 * 97.47858 * 21 20 19 42 42 H 1.07997 * 120.00516 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.49827 * 58.58004 * 25 12 11 44 44 H 1.09007 * 109.49549 * 178.67466 * 25 12 11 45 45 H 1.09008 * 109.58461 * 246.15216 * 26 9 7 46 46 H 1.08995 * 109.58777 * 6.43456 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2221 -0.2729 9 7 1.3702 -2.3624 0.3442 10 6 0.2264 -2.3410 1.2662 11 6 0.4985 -3.3202 2.4123 12 6 0.8136 -4.7017 1.8338 13 6 1.0520 -5.6906 2.9766 14 7 1.2349 -7.0365 2.4275 15 6 1.4599 -8.0767 3.2544 16 8 1.5106 -7.8987 4.4530 17 6 1.6485 -9.4610 2.6895 18 1 2.2359 -9.4206 1.7723 19 6 0.2752 -10.1258 2.4214 20 6 0.6399 -11.6352 2.4800 21 6 1.7272 -11.6829 3.5740 22 7 2.3036 -10.3346 3.6802 23 6 3.2711 -9.9593 4.5402 24 8 3.7401 -10.7661 5.3148 25 6 2.0689 -4.6171 0.9625 26 6 1.8145 -3.6527 -0.2003 27 1 -0.4850 0.8400 0.0004 28 1 -0.6766 -2.6419 0.7351 29 1 0.0967 -1.3358 1.6674 30 1 -0.3819 -3.3857 3.0516 31 1 1.3482 -2.9685 2.9974 32 1 -0.0265 -5.0419 1.2284 33 1 0.1924 -5.6853 3.6469 34 1 1.9453 -5.3991 3.5290 35 1 1.1940 -7.1789 1.4689 36 1 -0.4421 -9.8687 3.2009 37 1 -0.1057 -9.8524 1.4374 38 1 1.0401 -11.9722 1.5237 39 1 -0.2248 -12.2324 2.7693 40 1 2.5025 -12.3966 3.2953 41 1 1.2825 -11.9720 4.5263 42 1 3.6287 -8.9403 4.5396 43 1 2.9036 -4.2529 1.5614 44 1 2.3063 -5.6058 0.5696 45 1 1.0409 -4.0606 -0.8510 46 1 2.7337 -3.5123 -0.7691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347553469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:15 Heat of formation + Delta-G solvation = -77.639944 kcal Electronic energy + Delta-G solvation = -25889.846536 eV Core-core repulsion = 22199.622935 eV Total energy + Delta-G solvation = -3690.223601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67800 -40.13248 -39.27048 -38.10257 -36.40921 -34.52247 -32.70083 -32.52050 -31.45091 -30.69479 -28.28771 -26.00820 -25.28935 -23.87052 -23.28407 -22.50192 -21.86489 -21.05719 -20.55491 -18.88452 -18.54294 -18.32225 -16.95348 -16.81337 -16.69295 -16.37694 -16.09191 -15.66998 -15.28171 -15.22426 -15.02629 -14.74555 -14.65124 -14.29692 -14.15592 -13.97743 -13.79530 -13.43549 -13.23358 -12.98412 -12.86158 -12.71556 -12.54038 -12.26370 -12.24881 -12.01451 -11.81355 -11.73401 -11.58970 -11.29675 -11.15744 -11.06925 -10.85598 -10.51140 -10.10829 -9.81872 -8.64330 -7.86190 -5.30603 1.40502 1.46696 1.49317 1.54537 1.55444 1.89191 2.30788 2.52191 3.28386 3.38736 3.49462 3.74335 3.74960 3.88316 3.98218 4.05154 4.09322 4.12591 4.18719 4.39814 4.55263 4.57902 4.73387 4.76178 4.80146 4.81759 4.86071 4.92926 4.96932 5.03812 5.06147 5.17227 5.22180 5.29347 5.32467 5.33484 5.39514 5.47643 5.58407 5.68256 5.82289 6.23980 6.41667 6.54382 6.95527 7.17134 7.17848 7.91103 8.40503 9.19558 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.031522 B = 0.002495 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.058755 B =11219.016714 C =11482.304968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.613 5.613 10 C 0.177 3.823 11 C -0.124 4.124 12 C -0.077 4.077 13 C 0.136 3.864 14 N -0.702 5.702 15 C 0.502 3.498 16 O -0.581 6.581 17 C 0.112 3.888 18 H 0.142 0.858 19 C -0.118 4.118 20 C -0.115 4.115 21 C 0.092 3.908 22 N -0.611 5.611 23 C 0.522 3.478 24 O -0.602 6.602 25 C -0.114 4.114 26 C 0.139 3.861 27 H 0.249 0.751 28 H 0.000 1.000 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.419 0.581 36 H 0.066 0.934 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.139 0.861 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.021 0.979 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -22.821 0.007 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.337 5.337 10 C 0.052 3.948 11 C -0.163 4.163 12 C -0.096 4.096 13 C 0.012 3.988 14 N -0.354 5.354 15 C 0.288 3.712 16 O -0.460 6.460 17 C 0.006 3.994 18 H 0.160 0.840 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.030 4.030 22 N -0.346 5.346 23 C 0.294 3.706 24 O -0.482 6.482 25 C -0.153 4.153 26 C 0.013 3.987 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.257 0.743 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.155 0.845 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.039 0.961 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.355 -22.941 1.295 22.981 hybrid contribution 0.242 1.587 -0.107 1.609 sum -0.114 -21.354 1.188 21.388 Atomic orbital electron populations 1.70160 1.06543 1.25812 1.55532 1.25743 0.96010 1.01339 1.01496 0.85423 0.77648 0.79620 0.78266 1.20065 1.22106 1.20728 1.19464 0.92776 0.86285 1.40715 0.91818 1.44331 1.35974 1.02516 1.50858 1.20550 0.87864 0.97429 0.88994 1.21986 1.00735 0.95415 0.98206 1.21142 0.98947 0.93734 0.95755 1.21274 1.01073 0.80701 0.95730 1.45861 1.71500 1.06773 1.11274 1.21120 0.76041 0.87396 0.86614 1.90757 1.52333 1.85847 1.17103 1.22301 0.97994 0.86322 0.92808 0.84036 1.22905 0.92556 0.95087 1.05039 1.22704 0.97901 0.95831 0.98861 1.22160 0.97127 0.83472 1.00197 1.48863 1.37327 1.11950 1.36505 1.22485 0.77451 0.93133 0.77556 1.90659 1.59545 1.57018 1.40940 1.21942 0.96729 0.99612 0.97041 1.21099 0.97287 0.85885 0.94383 0.94176 0.98217 0.93394 0.91419 0.93437 0.89973 0.92006 0.92576 0.74270 0.91493 0.85258 0.87559 0.88125 0.90824 0.93002 0.84499 0.93363 0.89024 0.96114 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.42 11.19 21.65 0.24 -54.17 16 2 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 3 Si 0.96 44.37 29.59 68.60 2.03 46.40 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.26 -14.08 9.58 84.03 0.81 -13.27 16 8 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 9 N -0.61 -29.21 2.99 -699.12 -2.09 -31.31 16 10 C 0.18 8.10 5.30 86.36 0.46 8.55 16 11 C -0.12 -4.20 5.36 30.67 0.16 -4.03 16 12 C -0.08 -1.95 2.19 -10.76 -0.02 -1.97 16 13 C 0.14 2.97 5.06 86.38 0.44 3.41 16 14 N -0.70 -10.69 5.27 -463.05 -2.44 -13.13 16 15 C 0.50 9.12 6.66 87.66 0.58 9.70 16 16 O -0.58 -16.38 14.85 -3.03 -0.05 -16.43 16 17 C 0.11 1.26 3.62 44.72 0.16 1.42 16 18 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 19 C -0.12 -0.77 6.49 32.07 0.21 -0.56 16 20 C -0.12 -0.60 6.97 31.87 0.22 -0.38 16 21 C 0.09 1.29 6.86 86.73 0.59 1.88 16 22 N -0.61 -11.06 3.13 -808.25 -2.53 -13.60 16 23 C 0.52 13.19 10.76 129.79 1.40 14.59 16 24 O -0.60 -20.27 17.50 -3.03 -0.05 -20.33 16 25 C -0.11 -3.03 5.25 30.67 0.16 -2.87 16 26 C 0.14 5.06 6.52 86.36 0.56 5.62 16 27 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.05 2.55 6.06 -2.39 -0.01 2.54 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.42 3.68 7.65 -92.71 -0.71 2.97 16 36 H 0.07 0.72 8.05 -2.39 -0.02 0.70 16 37 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 39 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.14 3.17 7.13 -2.91 -0.02 3.15 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.09 1.64 7.15 -2.38 -0.02 1.63 16 45 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 Total: -1.00 -77.84 365.54 1.51 -76.33 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.26 Total: 6.51 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 6.15 Total: 19.72 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -6.82 Total: -112.20 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.10 Total: -36.76 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -77.84 1.51 -76.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347553469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.311 kcal (2) G-P(sol) polarization free energy of solvation -77.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds