Wall clock time and date at job start Fri Apr 10 2020 18:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28780 * 125.44935 * 2 1 4 4 N 1.28994 * 108.72869 * 180.02562 * 3 2 1 5 5 C 1.33321 * 107.35144 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.54603 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.46749 * 269.99589 * 6 5 4 8 8 C 1.34781 * 120.00023 * 180.02562 * 7 6 5 9 9 O 1.21588 * 119.99891 * 354.91621 * 8 7 6 10 10 N 1.34775 * 120.00215 * 174.92224 * 8 7 6 11 11 C 1.47080 * 120.88195 * 184.71941 * 10 8 7 12 12 C 1.53691 * 108.28013 * 128.75323 * 11 10 8 13 13 N 1.46898 * 109.25879 * 54.07882 * 12 11 10 14 14 C 1.46899 * 110.99825 * 172.61411 * 13 12 11 15 15 C 1.50703 * 109.47013 * 294.29723 * 14 13 12 16 16 H 1.08005 * 119.99977 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00393 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99971 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00249 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.46905 * 60.00429 * 19 17 15 21 21 H 1.48506 * 109.47130 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47068 * 300.00128 * 19 17 15 23 23 C 1.46901 * 111.26893 * 296.76140 * 13 12 11 24 24 C 1.47075 * 120.88220 * 4.99103 * 10 8 7 25 25 N 1.28883 * 125.44928 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47539 * 269.98031 * 1 2 3 27 27 H 1.08997 * 109.47232 * 29.98419 * 1 2 3 28 28 H 1.09007 * 109.46938 * 149.98131 * 1 2 3 29 29 H 1.09000 * 109.47425 * 29.99057 * 6 5 4 30 30 H 1.08995 * 109.46935 * 149.99845 * 6 5 4 31 31 H 0.97000 * 120.00191 * 0.02562 * 7 6 5 32 32 H 1.09005 * 109.62602 * 248.52102 * 11 10 8 33 33 H 1.09004 * 109.62572 * 9.09431 * 11 10 8 34 34 H 1.09005 * 109.64694 * 294.07791 * 12 11 10 35 35 H 1.09000 * 109.42581 * 173.94875 * 12 11 10 36 36 H 1.08992 * 109.47890 * 54.30166 * 14 13 12 37 37 H 1.09000 * 109.46887 * 174.30887 * 14 13 12 38 38 H 0.96992 * 120.00361 * 179.97438 * 18 17 15 39 39 H 1.09007 * 109.49433 * 303.14118 * 23 13 12 40 40 H 1.08999 * 109.49460 * 183.06767 * 23 13 12 41 41 H 1.09003 * 109.62922 * 350.89930 * 24 10 8 42 42 H 1.08997 * 109.62810 * 111.47862 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6780 -0.0005 5 6 3.4619 -0.6552 -0.0003 6 6 4.6825 -1.5392 -0.0002 7 7 5.0778 -1.8259 -1.3815 8 6 6.1506 -2.6036 -1.6278 9 8 6.8445 -2.9913 -0.7077 10 7 6.4544 -2.9516 -2.8939 11 6 7.5577 -3.8819 -3.1771 12 6 7.0273 -4.9931 -4.0970 13 7 6.4076 -4.3860 -5.2825 14 6 6.0440 -5.4113 -6.2696 15 6 7.2947 -6.0613 -6.8029 16 1 8.2629 -5.7446 -6.4440 17 6 7.2031 -7.0601 -7.7489 18 7 6.0241 -7.4453 -8.1863 19 14 8.7534 -7.8661 -8.4093 20 1 9.4974 -8.4988 -7.2907 21 1 8.3859 -8.9017 -9.4083 22 1 9.6094 -6.8384 -9.0545 23 6 5.2417 -3.5710 -4.9160 24 6 5.6951 -2.4064 -4.0294 25 7 2.2125 -1.0499 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3633 -0.8899 -0.5142 29 1 5.4989 -1.0314 0.5133 30 1 4.4547 -2.4729 0.5138 31 1 4.5674 -1.4560 -2.1188 32 1 8.3687 -3.3481 -3.6728 33 1 7.9180 -4.3172 -2.2450 34 1 6.2859 -5.5878 -3.5633 35 1 7.8537 -5.6332 -4.4060 36 1 5.4163 -6.1658 -5.7956 37 1 5.4974 -4.9474 -7.0907 38 1 5.9596 -8.1477 -8.8521 39 1 4.5251 -4.1856 -4.3710 40 1 4.7730 -3.1798 -5.8190 41 1 4.8232 -1.8656 -3.6611 42 1 6.3304 -1.7335 -4.6054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364603602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:31 Heat of formation + Delta-G solvation = 128.157275 kcal Electronic energy + Delta-G solvation = -25195.090454 eV Core-core repulsion = 21442.543298 eV Total energy + Delta-G solvation = -3752.547156 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.78414 -40.25466 -37.74343 -36.03903 -34.89859 -34.41426 -33.29578 -32.37519 -30.77919 -29.62064 -28.34479 -27.03761 -25.37935 -23.58288 -23.27807 -22.65007 -22.11748 -20.77423 -19.49117 -18.30097 -17.90039 -17.72939 -16.49302 -16.20222 -15.67171 -15.28107 -14.69633 -14.54023 -14.50127 -14.39416 -13.98805 -13.91908 -13.88803 -13.60533 -13.44854 -13.25789 -12.66724 -12.26641 -12.21178 -11.99007 -11.41319 -11.37345 -11.29953 -11.15267 -10.84256 -10.79375 -10.71995 -10.60483 -10.51792 -10.02115 -9.85872 -9.31934 -9.26769 -8.48486 -8.35349 -7.33241 -6.06363 -4.08230 0.76240 1.46975 1.56352 2.76177 3.24802 3.32545 3.36526 3.38527 3.39604 3.78993 3.89647 4.31746 4.37422 4.39237 4.63543 4.76699 4.93773 5.19099 5.25145 5.28366 5.34786 5.35970 5.38030 5.45336 5.64849 5.66081 5.82713 5.91554 6.03652 6.18566 6.22717 6.40935 6.55977 6.65221 6.98899 7.21303 7.27564 7.73696 7.91099 7.92582 8.00735 8.11844 8.47145 8.60342 8.98870 9.56408 11.04480 Molecular weight = 309.17amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.002552 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.667308 B =10969.735518 C =11708.110035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.139 5.139 3 N -0.061 5.061 4 N -0.267 5.267 5 C 0.152 3.848 6 C 0.242 3.758 7 N -0.747 5.747 8 C 0.714 3.286 9 O -0.592 6.592 10 N -0.622 5.622 11 C 0.134 3.866 12 C 0.050 3.950 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.041 3.959 24 C 0.119 3.881 25 N -0.289 5.289 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.397 0.603 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.025 0.975 35 H 0.098 0.902 36 H -0.009 1.009 37 H 0.031 0.969 38 H 0.262 0.738 39 H 0.027 0.973 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.732 14.901 15.576 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.052 5.052 3 N -0.055 5.055 4 N -0.139 5.139 5 C -0.131 4.131 6 C 0.115 3.885 7 N -0.407 5.407 8 C 0.415 3.585 9 O -0.470 6.470 10 N -0.359 5.359 11 C 0.011 3.989 12 C -0.079 4.079 13 N -0.260 5.260 14 C 0.070 3.930 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.089 4.089 24 C -0.005 4.005 25 N -0.141 5.141 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.234 0.766 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.116 0.884 36 H 0.009 0.991 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.383 15.330 15.915 24.857 hybrid contribution -0.229 -1.228 -0.546 1.363 sum -11.612 14.102 15.369 23.873 Atomic orbital electron populations 1.22503 0.68790 1.07156 1.06224 1.50132 1.10933 1.00864 1.43229 1.79029 0.96441 1.14240 1.15767 1.75917 1.09885 1.10968 1.17120 1.25578 0.93123 0.90756 1.03650 1.19128 0.88661 0.96474 0.84247 1.45087 1.32212 1.55806 1.07606 1.15646 0.80540 0.78928 0.83367 1.90907 1.52444 1.60497 1.43185 1.47386 1.36167 1.48726 1.03638 1.21867 0.87623 0.89910 0.99517 1.22465 1.00111 0.94864 0.90454 1.62078 1.26254 1.26199 1.11477 1.19716 0.96515 0.87619 0.89193 1.21108 0.92953 1.18126 1.22638 0.91778 1.24992 0.96236 0.96852 0.96488 1.69945 1.23001 1.30084 1.30815 0.86542 0.83115 0.78973 0.78682 1.20194 1.21398 1.20119 1.22377 0.93321 0.94954 0.98231 1.21770 0.94979 0.96422 0.87336 1.74776 1.03260 1.15293 1.20731 0.87843 0.86746 0.86856 0.88029 0.88560 0.76638 0.90999 0.89200 0.95675 0.88410 0.99128 0.95112 0.92828 0.95524 0.90158 0.91545 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.21 11.63 59.85 0.70 0.90 16 2 N -0.14 -1.13 4.40 -16.70 -0.07 -1.20 16 3 N -0.06 -0.63 13.25 60.35 0.80 0.17 16 4 N -0.27 -3.14 12.50 32.45 0.41 -2.74 16 5 C 0.15 1.64 7.74 -156.62 -1.21 0.42 16 6 C 0.24 2.61 6.30 -5.19 -0.03 2.57 16 7 N -0.75 -9.04 5.46 -66.41 -0.36 -9.41 16 8 C 0.71 10.99 8.31 -86.92 -0.72 10.27 16 9 O -0.59 -10.86 15.83 5.29 0.08 -10.77 16 10 N -0.62 -9.53 3.00 -177.91 -0.53 -10.07 16 11 C 0.13 2.19 6.61 -3.37 -0.02 2.17 16 12 C 0.05 0.96 5.47 -3.47 -0.02 0.94 16 13 N -0.53 -11.01 4.62 -235.47 -1.09 -12.10 16 14 C 0.19 4.91 4.72 -4.98 -0.02 4.88 16 15 C -0.51 -13.92 8.41 -34.44 -0.29 -14.21 16 16 H 0.06 1.72 7.13 -52.48 -0.37 1.34 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 19 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 24 C 0.12 1.61 6.59 -3.61 -0.02 1.59 16 25 N -0.29 -2.90 12.13 32.47 0.39 -2.51 16 26 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 27 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.11 0.11 8.14 -51.92 -0.42 -0.31 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.40 4.30 5.96 -40.82 -0.24 4.05 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.47 7.09 -51.93 -0.37 1.11 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 1.99 6.67 -51.93 -0.35 1.64 16 36 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 37 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 41 H 0.07 0.72 5.63 -51.93 -0.29 0.42 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -34.77 350.36 -6.96 -41.73 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.81 Total: -0.76 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: -1.77 Total: 11.65 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: 0.28 Total: -63.43 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.77 -6.96 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364603602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.886 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds