Wall clock time and date at job start Fri Apr 10 2020 18:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00180 * 2 1 4 4 C 1.50704 * 109.46879 * 66.04649 * 3 2 1 5 5 N 1.31640 * 126.30141 * 90.02449 * 4 3 2 6 6 N 1.29208 * 110.04426 * 180.26314 * 5 4 3 7 7 C 1.29825 * 109.15378 * 0.42802 * 6 5 4 8 8 N 1.33221 * 126.30206 * 269.71976 * 4 3 2 9 9 C 1.46068 * 131.80486 * 359.36166 * 8 4 3 10 10 C 1.52925 * 109.32561 * 150.67723 * 9 8 4 11 11 N 1.45859 * 112.54122 * 46.63133 * 10 9 8 12 12 C 1.46498 * 119.06028 * 139.96840 * 11 10 9 13 13 C 1.35458 * 121.88469 * 319.98864 * 11 10 9 14 14 O 1.21600 * 121.81753 * 190.12220 * 13 11 10 15 15 C 1.46907 * 110.99819 * 236.04692 * 2 1 3 16 16 C 1.53004 * 109.47025 * 293.95424 * 15 2 1 17 17 H 1.08992 * 109.47421 * 60.00076 * 16 15 2 18 18 O 1.42901 * 109.47096 * 299.99946 * 16 15 2 19 19 C 1.50695 * 109.46637 * 180.02562 * 16 15 2 20 20 H 1.08004 * 120.00546 * 0.27598 * 19 16 15 21 21 C 1.37885 * 119.99721 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00035 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99853 * 179.97438 * 21 19 16 24 24 H 1.48494 * 109.47228 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46793 * 120.00131 * 23 21 19 26 26 H 1.48500 * 109.47000 * 240.00224 * 23 21 19 27 27 H 1.09004 * 109.47301 * 183.95547 * 1 2 3 28 28 H 1.09003 * 109.47210 * 303.94634 * 1 2 3 29 29 H 1.08989 * 109.47496 * 63.95216 * 1 2 3 30 30 H 1.08996 * 109.46885 * 186.04494 * 3 2 1 31 31 H 1.08995 * 109.46807 * 306.05006 * 3 2 1 32 32 H 1.09006 * 109.62475 * 30.62053 * 9 8 4 33 33 H 1.09006 * 109.33668 * 270.55837 * 9 8 4 34 34 H 1.08998 * 108.86722 * 285.83557 * 10 9 8 35 35 H 1.09003 * 108.78693 * 167.35949 * 10 9 8 36 36 H 1.09001 * 109.47707 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.47377 * 300.01633 * 12 11 10 38 38 H 1.08998 * 109.47609 * 60.01776 * 12 11 10 39 39 H 1.09000 * 109.46806 * 173.95500 * 15 2 1 40 40 H 1.08997 * 109.46869 * 53.95005 * 15 2 1 41 41 H 0.96708 * 113.99953 * 299.99863 * 18 16 15 42 42 H 0.97000 * 119.99706 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 7 2.3569 2.0494 2.4006 6 7 1.7505 2.7192 3.3243 7 6 0.6225 3.1621 2.8585 8 7 0.5358 2.7567 1.5406 9 6 -0.6031 3.1058 0.6952 10 6 -1.8491 3.2690 1.5667 11 7 -1.5992 4.0796 2.7533 12 6 -2.6169 5.0404 3.1860 13 6 -0.4528 3.9697 3.4664 14 8 -0.3172 4.5068 4.5490 15 6 1.9954 -0.7660 -1.1377 16 6 1.6314 -2.2427 -0.9704 17 1 0.5472 -2.3476 -0.9324 18 8 2.2008 -2.7392 0.2425 19 6 2.1720 -3.0284 -2.1371 20 1 2.7242 -2.5258 -2.9174 21 6 1.9669 -4.3903 -2.2053 22 7 1.2992 -5.0033 -1.2525 23 14 2.6364 -5.3642 -3.6520 24 1 3.3444 -4.4472 -4.5809 25 1 3.5835 -6.3960 -3.1581 26 1 1.5141 -6.0239 -4.3664 27 1 -0.3634 -1.0252 0.0709 28 1 -0.3634 0.5739 0.8525 29 1 -0.3634 0.4512 -0.9232 30 1 3.0797 1.3443 -0.1082 31 1 1.5611 1.9273 -0.8308 32 1 -0.7716 2.3157 -0.0366 33 1 -0.3951 4.0426 0.1782 34 1 -2.1923 2.2828 1.8792 35 1 -2.6320 3.7430 0.9746 36 1 -2.2711 5.5579 4.0809 37 1 -2.7925 5.7661 2.3919 38 1 -3.5444 4.5124 3.4073 39 1 3.0797 -0.6611 -1.1757 40 1 1.5610 -0.3873 -2.0628 41 1 3.1653 -2.6772 0.2785 42 1 1.1547 -5.9612 -1.3007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413067902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:34 Heat of formation + Delta-G solvation = 27.504928 kcal Electronic energy + Delta-G solvation = -26063.965014 eV Core-core repulsion = 22274.760493 eV Total energy + Delta-G solvation = -3789.204520 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.53876 -40.07347 -37.87184 -37.23909 -35.15149 -34.49738 -32.13053 -31.78994 -30.47051 -28.80030 -28.18580 -27.13828 -25.68090 -24.85766 -23.48226 -23.09101 -20.78977 -20.14446 -19.39584 -18.48836 -17.54931 -17.09745 -16.64745 -16.29153 -15.84816 -15.19726 -15.09118 -14.97916 -14.67548 -14.56630 -14.15447 -13.81393 -13.53988 -13.35660 -13.24060 -12.94528 -12.81524 -12.54587 -12.40316 -11.99961 -11.68728 -11.46969 -11.20313 -11.00187 -10.83196 -10.78322 -10.71876 -10.57118 -10.47076 -10.11278 -9.56742 -9.30640 -9.09511 -8.62665 -8.23041 -7.89896 -6.05733 -4.24796 0.88479 1.97296 2.12979 2.22584 2.99251 3.23036 3.31955 3.34062 3.56181 3.70766 3.93905 4.22049 4.23063 4.35855 4.40635 4.63293 4.64533 4.81774 4.87388 5.04186 5.12210 5.22094 5.29950 5.31561 5.41483 5.45927 5.60623 5.68974 5.75041 5.91755 6.04211 6.21324 6.38035 6.42563 6.58036 6.67605 7.19897 7.27515 7.44432 7.67799 7.79325 8.12361 8.46741 8.79002 9.42262 9.58335 10.98299 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.030024 B = 0.002936 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.354000 B = 9533.940649 C = 9863.024727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.520 5.520 3 C 0.132 3.868 4 C 0.243 3.757 5 N -0.282 5.282 6 N -0.206 5.206 7 C 0.107 3.893 8 N -0.466 5.466 9 C 0.081 3.919 10 C 0.103 3.897 11 N -0.620 5.620 12 C 0.080 3.920 13 C 0.620 3.380 14 O -0.490 6.490 15 C 0.032 3.968 16 C 0.238 3.762 17 H 0.054 0.946 18 O -0.553 6.553 19 C -0.576 4.576 20 H 0.056 0.944 21 C 0.080 3.920 22 N -0.857 5.857 23 Si 0.889 3.111 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.283 1.283 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.022 0.978 30 H 0.114 0.886 31 H 0.051 0.949 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.345 0.655 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 19.891 0.188 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.245 5.245 3 C 0.002 3.998 4 C -0.025 4.025 5 N -0.125 5.125 6 N -0.049 5.049 7 C -0.159 4.159 8 N -0.161 5.161 9 C -0.043 4.043 10 C -0.021 4.021 11 N -0.356 5.356 12 C -0.062 4.062 13 C 0.404 3.596 14 O -0.359 6.359 15 C -0.095 4.095 16 C 0.180 3.820 17 H 0.072 0.928 18 O -0.355 6.355 19 C -0.614 4.614 20 H 0.074 0.926 21 C -0.126 4.126 22 N -0.492 5.492 23 Si 0.716 3.284 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.209 1.209 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.140 0.860 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.189 0.811 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.098 19.423 2.359 21.577 hybrid contribution -0.484 0.082 -2.787 2.830 sum -9.582 19.505 -0.428 21.736 Atomic orbital electron populations 1.22575 0.88179 1.03965 0.98124 1.61953 1.07389 1.09024 1.46137 1.20590 1.02957 0.89701 0.86567 1.24714 0.84466 0.93780 0.99498 1.75175 1.24183 1.16884 0.96281 1.74197 1.01545 1.06666 1.22502 1.24424 0.99708 1.08066 0.83697 1.46437 1.18134 1.39650 1.11864 1.22473 0.83630 1.04250 0.93938 1.21645 0.96594 0.97431 0.86391 1.47542 1.18309 1.41659 1.28132 1.21839 0.90621 0.91795 1.01943 1.16528 0.80187 0.79259 0.83654 1.90867 1.80098 1.46551 1.18398 1.23214 0.99616 0.98328 0.88309 1.19319 0.94843 0.83980 0.83898 0.92831 1.86572 1.22475 1.86216 1.40256 1.21654 1.38270 0.93388 1.08109 0.92604 1.25024 0.94219 0.97875 0.95517 1.70089 1.38167 1.09470 1.31482 0.86616 0.78874 0.80201 0.82659 1.19736 1.20806 1.20945 0.89368 0.93255 0.95988 0.86838 0.93160 0.86024 0.88218 0.89916 0.86784 0.89031 0.91519 0.91386 0.91087 0.94991 0.81129 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 7.97 60.06 0.48 0.76 16 2 N -0.52 -8.45 4.62 -244.37 -1.13 -9.58 16 3 C 0.13 1.72 5.44 -4.97 -0.03 1.70 16 4 C 0.24 3.50 6.70 -156.09 -1.05 2.46 16 5 N -0.28 -5.07 12.26 32.56 0.40 -4.67 16 6 N -0.21 -3.75 12.24 32.42 0.40 -3.35 16 7 C 0.11 1.59 7.93 -154.52 -1.22 0.37 16 8 N -0.47 -5.55 2.66 -111.92 -0.30 -5.84 16 9 C 0.08 0.52 6.41 -4.31 -0.03 0.49 16 10 C 0.10 0.53 6.46 -4.43 -0.03 0.51 16 11 N -0.62 -5.10 3.22 -183.14 -0.59 -5.69 16 12 C 0.08 0.43 10.52 59.85 0.63 1.06 16 13 C 0.62 8.10 7.67 -12.14 -0.09 8.01 16 14 O -0.49 -7.84 16.64 5.28 0.09 -7.75 16 15 C 0.03 0.59 4.56 -3.82 -0.02 0.57 16 16 C 0.24 5.64 2.70 -27.88 -0.08 5.57 16 17 H 0.05 1.39 6.55 -51.93 -0.34 1.05 16 18 O -0.55 -14.11 12.59 -35.23 -0.44 -14.55 16 19 C -0.58 -14.99 8.76 -34.44 -0.30 -15.29 16 20 H 0.06 1.41 7.74 -52.48 -0.41 1.00 16 21 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 22 N -0.86 -24.69 12.84 55.43 0.71 -23.98 16 23 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H 0.09 1.51 6.47 -51.93 -0.34 1.18 16 28 H 0.05 0.63 5.52 -51.93 -0.29 0.35 16 29 H 0.02 0.26 7.63 -51.94 -0.40 -0.14 16 30 H 0.11 1.45 7.93 -51.93 -0.41 1.04 16 31 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.12 0.66 5.69 -51.93 -0.30 0.36 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.16 7.93 -51.93 -0.41 -0.25 16 36 H 0.09 0.65 6.96 -51.93 -0.36 0.29 16 37 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 40 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 41 H 0.35 7.99 9.04 45.56 0.41 8.40 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -36.19 344.91 -7.43 -43.62 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.91 Total: 2.87 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.83 Total: 8.27 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.51 Total: -53.11 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.36 Total: -22.31 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.19 -7.43 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413067902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.129 kcal (2) G-P(sol) polarization free energy of solvation -36.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds