Wall clock time and date at job start Fri Apr 10 2020 18:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00180 * 2 1 4 4 C 1.50704 * 109.46879 * 66.04649 * 3 2 1 5 5 N 1.31640 * 126.30141 * 90.02449 * 4 3 2 6 6 N 1.29208 * 110.04426 * 180.26314 * 5 4 3 7 7 C 1.29825 * 109.15378 * 0.42802 * 6 5 4 8 8 N 1.33221 * 126.30206 * 269.71976 * 4 3 2 9 9 C 1.46068 * 131.80486 * 359.36166 * 8 4 3 10 10 C 1.52925 * 109.32561 * 150.67723 * 9 8 4 11 11 N 1.45859 * 112.54122 * 46.63133 * 10 9 8 12 12 C 1.46498 * 119.06028 * 139.96840 * 11 10 9 13 13 C 1.35458 * 121.88469 * 319.98864 * 11 10 9 14 14 O 1.21600 * 121.81753 * 190.12220 * 13 11 10 15 15 C 1.46907 * 110.99819 * 236.04692 * 2 1 3 16 16 C 1.53004 * 109.47025 * 293.95424 * 15 2 1 17 17 H 1.08992 * 109.47421 * 60.00076 * 16 15 2 18 18 O 1.42901 * 109.47096 * 299.99946 * 16 15 2 19 19 C 1.50695 * 109.46637 * 180.02562 * 16 15 2 20 20 H 1.08004 * 120.00546 * 0.27598 * 19 16 15 21 21 C 1.37885 * 119.99721 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00035 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99853 * 179.97438 * 21 19 16 24 24 H 1.48494 * 109.47228 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46793 * 120.00131 * 23 21 19 26 26 H 1.48500 * 109.47000 * 240.00224 * 23 21 19 27 27 H 1.09004 * 109.47301 * 183.95547 * 1 2 3 28 28 H 1.09003 * 109.47210 * 303.94634 * 1 2 3 29 29 H 1.08989 * 109.47496 * 63.95216 * 1 2 3 30 30 H 1.08996 * 109.46885 * 186.04494 * 3 2 1 31 31 H 1.08995 * 109.46807 * 306.05006 * 3 2 1 32 32 H 1.09006 * 109.62475 * 30.62053 * 9 8 4 33 33 H 1.09006 * 109.33668 * 270.55837 * 9 8 4 34 34 H 1.08998 * 108.86722 * 285.83557 * 10 9 8 35 35 H 1.09003 * 108.78693 * 167.35949 * 10 9 8 36 36 H 1.09001 * 109.47707 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.47377 * 300.01633 * 12 11 10 38 38 H 1.08998 * 109.47609 * 60.01776 * 12 11 10 39 39 H 1.09000 * 109.46806 * 173.95500 * 15 2 1 40 40 H 1.08997 * 109.46869 * 53.95005 * 15 2 1 41 41 H 0.96708 * 113.99953 * 299.99863 * 18 16 15 42 42 H 0.97000 * 119.99706 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 7 2.3569 2.0494 2.4006 6 7 1.7505 2.7192 3.3243 7 6 0.6225 3.1621 2.8585 8 7 0.5358 2.7567 1.5406 9 6 -0.6031 3.1058 0.6952 10 6 -1.8491 3.2690 1.5667 11 7 -1.5992 4.0796 2.7533 12 6 -2.6169 5.0404 3.1860 13 6 -0.4528 3.9697 3.4664 14 8 -0.3172 4.5068 4.5490 15 6 1.9954 -0.7660 -1.1377 16 6 1.6314 -2.2427 -0.9704 17 1 0.5472 -2.3476 -0.9324 18 8 2.2008 -2.7392 0.2425 19 6 2.1720 -3.0284 -2.1371 20 1 2.7242 -2.5258 -2.9174 21 6 1.9669 -4.3903 -2.2053 22 7 1.2992 -5.0033 -1.2525 23 14 2.6364 -5.3642 -3.6520 24 1 3.3444 -4.4472 -4.5809 25 1 3.5835 -6.3960 -3.1581 26 1 1.5141 -6.0239 -4.3664 27 1 -0.3634 -1.0252 0.0709 28 1 -0.3634 0.5739 0.8525 29 1 -0.3634 0.4512 -0.9232 30 1 3.0797 1.3443 -0.1082 31 1 1.5611 1.9273 -0.8308 32 1 -0.7716 2.3157 -0.0366 33 1 -0.3951 4.0426 0.1782 34 1 -2.1923 2.2828 1.8792 35 1 -2.6320 3.7430 0.9746 36 1 -2.2711 5.5579 4.0809 37 1 -2.7925 5.7661 2.3919 38 1 -3.5444 4.5124 3.4073 39 1 3.0797 -0.6611 -1.1757 40 1 1.5610 -0.3873 -2.0628 41 1 3.1653 -2.6772 0.2785 42 1 1.1547 -5.9612 -1.3007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413067902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:33 Heat of formation + Delta-G solvation = -2.647937 kcal Electronic energy + Delta-G solvation = -26065.272540 eV Core-core repulsion = 22274.760493 eV Total energy + Delta-G solvation = -3790.512047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.58621 -40.94572 -39.19796 -38.14287 -36.80705 -35.43661 -34.17269 -32.92826 -31.18472 -30.38287 -29.11131 -28.07415 -27.33683 -25.53938 -24.69386 -24.30638 -22.08567 -21.50274 -20.22401 -19.33923 -19.04799 -18.36171 -17.50847 -17.26884 -16.78560 -16.62140 -16.51926 -16.15319 -15.96266 -15.74369 -15.50415 -15.02030 -14.73143 -14.30726 -14.18509 -14.01169 -13.73636 -13.33588 -13.20221 -13.12865 -13.00426 -12.84521 -12.75406 -12.69492 -12.52260 -12.26781 -11.96717 -11.78550 -11.64210 -11.37372 -10.96957 -10.70437 -10.66131 -10.07549 -9.98088 -9.18191 -8.09762 -6.34889 -0.12942 1.11035 1.13395 1.41447 1.42142 1.44960 1.55632 1.92923 2.41150 2.78547 2.93965 3.08047 3.17687 3.27759 3.60827 3.78449 3.89094 4.11636 4.23359 4.29181 4.32298 4.36822 4.39207 4.46242 4.53744 4.56521 4.62617 4.68973 4.70843 4.78744 4.92563 4.97541 5.09006 5.09381 5.53522 5.63676 5.78684 5.83036 5.94610 6.12692 6.18699 6.56081 6.79407 7.34984 7.39772 7.67410 8.94712 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.030024 B = 0.002936 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.354000 B = 9533.940649 C = 9863.024727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.140 3.860 4 C 0.243 3.757 5 N -0.329 5.329 6 N -0.260 5.260 7 C 0.107 3.893 8 N -0.452 5.452 9 C 0.067 3.933 10 C 0.096 3.904 11 N -0.604 5.604 12 C 0.074 3.926 13 C 0.612 3.388 14 O -0.534 6.534 15 C 0.053 3.947 16 C 0.233 3.767 17 H 0.025 0.975 18 O -0.576 6.576 19 C -0.582 4.582 20 H 0.064 0.936 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 0.958 3.042 24 H -0.260 1.260 25 H -0.285 1.285 26 H -0.281 1.281 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.081 0.919 35 H 0.168 0.832 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.352 0.648 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.316 21.706 -2.790 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C 0.010 3.990 4 C -0.026 4.026 5 N -0.173 5.173 6 N -0.103 5.103 7 C -0.162 4.162 8 N -0.146 5.146 9 C -0.054 4.054 10 C -0.025 4.025 11 N -0.338 5.338 12 C -0.066 4.066 13 C 0.395 3.605 14 O -0.408 6.408 15 C -0.074 4.074 16 C 0.176 3.824 17 H 0.043 0.957 18 O -0.379 6.379 19 C -0.620 4.620 20 H 0.083 0.917 21 C -0.178 4.178 22 N -0.538 5.538 23 Si 0.783 3.217 24 H -0.183 1.183 25 H -0.212 1.212 26 H -0.207 1.207 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.099 0.901 35 H 0.186 0.814 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.196 0.804 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.750 21.261 -0.683 23.834 hybrid contribution -0.101 -0.424 -1.866 1.916 sum -10.851 20.837 -2.550 23.632 Atomic orbital electron populations 1.22505 0.87133 1.02220 1.00432 1.61692 1.08631 1.11218 1.45667 1.20623 1.03235 0.88161 0.86993 1.24831 0.84914 0.93839 0.99032 1.75031 1.26238 1.18352 0.97666 1.74068 1.03646 1.08650 1.23954 1.24775 0.99217 1.07312 0.84885 1.46652 1.18563 1.38067 1.11275 1.23061 0.82097 1.06347 0.93849 1.22041 0.97261 0.97636 0.85604 1.47699 1.16781 1.41369 1.27989 1.22107 0.90122 0.91998 1.02374 1.16627 0.81244 0.79007 0.83609 1.90836 1.81083 1.48555 1.20285 1.22730 1.00006 0.94977 0.89706 1.19270 0.93091 0.87517 0.82566 0.95728 1.86526 1.23138 1.86997 1.41228 1.22101 1.37382 0.93811 1.08746 0.91744 1.25889 0.94567 0.99282 0.98057 1.70237 1.40180 1.09601 1.33825 0.85541 0.78090 0.78606 0.79482 1.18337 1.21153 1.20663 0.93122 0.92031 0.92406 0.86841 0.88860 0.84207 0.85111 0.90079 0.81437 0.91322 0.88005 0.89227 0.90643 0.93286 0.80376 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 7.97 127.69 1.02 1.68 16 2 N -0.55 -16.86 4.62 -927.04 -4.28 -21.15 16 3 C 0.14 3.28 5.44 85.56 0.47 3.74 16 4 C 0.24 6.72 6.70 138.36 0.93 7.65 16 5 N -0.33 -12.15 12.26 -50.89 -0.62 -12.78 16 6 N -0.26 -9.89 12.24 -51.36 -0.63 -10.52 16 7 C 0.11 3.17 7.93 136.36 1.08 4.25 16 8 N -0.45 -9.83 2.66 -508.00 -1.35 -11.19 16 9 C 0.07 0.56 6.41 86.44 0.55 1.12 16 10 C 0.10 0.56 6.46 86.48 0.56 1.11 16 11 N -0.60 -8.24 3.22 -851.20 -2.74 -10.98 16 12 C 0.07 0.56 10.52 127.77 1.34 1.90 16 13 C 0.61 15.78 7.67 86.60 0.66 16.45 16 14 O -0.53 -17.72 16.64 -4.03 -0.07 -17.79 16 15 C 0.05 1.85 4.56 86.30 0.39 2.24 16 16 C 0.23 11.12 2.70 29.85 0.08 11.20 16 17 H 0.02 1.32 6.55 -2.39 -0.02 1.30 16 18 O -0.58 -30.04 12.59 -148.98 -1.88 -31.92 16 19 C -0.58 -30.00 8.76 25.60 0.22 -29.78 16 20 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 21 C 0.02 1.31 5.40 84.66 0.46 1.77 16 22 N -0.90 -52.93 12.84 21.45 0.28 -52.65 16 23 Si 0.96 41.85 29.54 68.60 2.03 43.88 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 27 H 0.05 1.74 6.47 -2.38 -0.02 1.72 16 28 H 0.06 1.44 5.52 -2.39 -0.01 1.43 16 29 H 0.06 1.10 7.63 -2.39 -0.02 1.09 16 30 H 0.11 2.68 7.93 -2.39 -0.02 2.67 16 31 H 0.09 1.42 8.12 -2.39 -0.02 1.40 16 32 H 0.14 0.74 5.69 -2.38 -0.01 0.72 16 33 H 0.13 0.40 8.14 -2.38 -0.02 0.39 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.17 -0.70 7.93 -2.39 -0.02 -0.72 16 36 H 0.07 0.90 6.96 -2.39 -0.02 0.88 16 37 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.08 2.55 7.93 -2.39 -0.02 2.53 16 40 H 0.05 1.53 8.12 -2.39 -0.02 1.51 16 41 H 0.35 16.68 9.04 -74.05 -0.67 16.01 16 42 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -85.07 344.91 -1.11 -86.18 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.39 Total: 15.59 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 7.77 Total: 23.32 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -9.35 Total: -119.25 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -1.94 Total: -49.71 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -85.07 -1.11 -86.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413067902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.529 kcal (2) G-P(sol) polarization free energy of solvation -85.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds