Wall clock time and date at job start Fri Apr 10 2020 18:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 N 1.28713 * 125.86759 * 269.69398 * 3 2 1 5 5 N 1.28640 * 110.17305 * 179.82431 * 4 3 2 6 6 C 1.33766 * 108.88817 * 0.43800 * 5 4 3 7 7 C 1.35311 * 125.86447 * 89.99726 * 3 2 1 8 8 C 1.50698 * 126.91671 * 359.97438 * 7 3 2 9 9 N 1.46504 * 109.46940 * 274.99790 * 8 7 3 10 10 C 1.34775 * 119.99831 * 180.02562 * 9 8 7 11 11 O 1.21585 * 120.00512 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99945 * 180.02562 * 10 9 8 13 13 C 1.47023 * 125.64674 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.26977 * 181.02908 * 13 12 10 15 15 C 1.55155 * 102.94364 * 22.19205 * 14 13 12 16 16 O 1.42905 * 111.00200 * 82.57355 * 15 14 13 17 17 C 1.50696 * 111.00342 * 206.38824 * 15 14 13 18 18 H 1.07997 * 120.00012 * 359.97438 * 17 15 14 19 19 C 1.37884 * 119.99771 * 180.02562 * 17 15 14 20 20 N 1.31510 * 120.00094 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 119.99704 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47145 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46672 * 120.00064 * 21 19 17 24 24 H 1.48496 * 109.46929 * 239.99755 * 21 19 17 25 25 C 1.47422 * 125.64772 * 179.71507 * 12 10 9 26 26 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 28 28 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 30 30 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 31 31 H 1.07993 * 126.75179 * 179.75789 * 6 5 4 32 32 H 1.09001 * 109.47238 * 34.99064 * 8 7 3 33 33 H 1.08997 * 109.47587 * 154.99838 * 8 7 3 34 34 H 0.96995 * 119.99610 * 359.97438 * 9 8 7 35 35 H 1.08999 * 109.88302 * 300.44429 * 13 12 10 36 36 H 1.08995 * 109.87981 * 61.60873 * 13 12 10 37 37 H 1.08993 * 110.71847 * 140.55909 * 14 13 12 38 38 H 1.09006 * 110.71894 * 263.65572 * 14 13 12 39 39 H 0.96703 * 113.99761 * 179.97438 * 16 15 14 40 40 H 0.96996 * 119.99980 * 180.02562 * 20 19 17 41 41 H 1.08994 * 110.36728 * 274.74242 * 25 12 10 42 42 H 1.09003 * 110.36665 * 37.07024 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2750 2.0904 -1.0430 5 7 2.6826 3.2599 -0.6951 6 6 2.7074 3.3302 0.6405 7 6 2.2826 2.1287 1.0966 8 6 2.1333 1.7083 2.5360 9 7 0.7494 1.9229 2.9664 10 6 0.3802 1.6163 4.2258 11 8 1.1953 1.1612 5.0047 12 7 -0.8931 1.8132 4.6216 13 6 -1.9763 2.3525 3.7865 14 6 -3.2419 2.4224 4.6667 15 6 -2.6632 2.4500 6.1060 16 8 -2.2690 3.7733 6.4742 17 6 -3.6507 1.8884 7.0961 18 1 -4.6138 1.5359 6.7575 19 6 -3.3251 1.8255 8.4345 20 7 -2.1530 2.2562 8.8470 21 14 -4.5496 1.1300 9.6619 22 1 -5.7853 0.7179 8.9490 23 1 -3.9541 -0.0486 10.3413 24 1 -4.8822 2.1673 10.6711 25 6 -1.4317 1.5175 5.9616 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0071 4.1787 1.2374 32 1 2.3845 0.6522 2.6340 33 1 2.8035 2.3006 3.1589 34 1 0.0992 2.2863 2.3451 35 1 -1.7126 3.3505 3.4364 36 1 -2.1519 1.6936 2.9362 37 1 -3.8055 3.3322 4.4601 38 1 -3.8657 1.5413 4.5158 39 1 -1.9014 3.8403 7.3662 40 1 -1.9238 2.2116 9.7884 41 1 -1.7345 0.4725 6.0266 42 1 -0.6908 1.7471 6.7274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413896665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:40 Heat of formation + Delta-G solvation = 24.919261 kcal Electronic energy + Delta-G solvation = -26127.130623 eV Core-core repulsion = 22337.813980 eV Total energy + Delta-G solvation = -3789.316643 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.55277 -39.75393 -37.52962 -35.89766 -34.82623 -34.31939 -32.18700 -31.60072 -31.04154 -30.04551 -27.94693 -26.65992 -24.90455 -24.62345 -22.78066 -22.59594 -20.77571 -19.75733 -19.66601 -18.02352 -17.39433 -17.09206 -16.70216 -15.72804 -15.66665 -15.20547 -15.04505 -14.65264 -14.38030 -14.26965 -13.91962 -13.59288 -13.30624 -13.08840 -12.97164 -12.84104 -12.43951 -12.18522 -11.98658 -11.74395 -11.64649 -11.52230 -11.10131 -11.08601 -10.85125 -10.65945 -10.50927 -10.39277 -10.22658 -9.89867 -9.49271 -9.40321 -9.06743 -8.72876 -8.42036 -7.78055 -6.33301 -4.42911 1.19298 2.02830 2.30506 3.08037 3.17387 3.25928 3.28860 3.59271 3.97536 4.13271 4.21278 4.35976 4.41415 4.53202 4.66830 4.81804 4.93877 5.07606 5.12304 5.32896 5.35809 5.41643 5.55304 5.62067 5.64396 5.73524 5.93042 5.96373 6.02044 6.27963 6.44511 6.47863 6.64160 6.79623 6.85016 7.15151 7.26923 7.48830 7.70421 7.95681 8.25374 8.39410 8.61034 8.97208 9.27179 9.42666 10.73946 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.003109 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.147128 B = 9002.908372 C = 9140.937250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.278 5.278 4 N -0.081 5.081 5 N -0.273 5.273 6 C -0.027 4.027 7 C -0.036 4.036 8 C 0.217 3.783 9 N -0.751 5.751 10 C 0.718 3.282 11 O -0.594 6.594 12 N -0.624 5.624 13 C 0.106 3.894 14 C -0.117 4.117 15 C 0.250 3.750 16 O -0.584 6.584 17 C -0.538 4.538 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.112 3.888 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.193 0.807 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.394 0.606 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.387 0.613 40 H 0.271 0.729 41 H 0.058 0.942 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.213 -3.720 -14.664 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.074 5.074 4 N -0.060 5.060 5 N -0.138 5.138 6 C -0.186 4.186 7 C -0.168 4.168 8 C 0.091 3.909 9 N -0.409 5.409 10 C 0.420 3.580 11 O -0.473 6.473 12 N -0.361 5.361 13 C -0.018 4.018 14 C -0.154 4.154 15 C 0.209 3.791 16 O -0.394 6.394 17 C -0.576 4.576 18 H 0.086 0.914 19 C -0.132 4.132 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.010 4.010 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.210 0.790 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.239 0.761 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.805 -3.907 -16.086 17.542 hybrid contribution -0.703 -0.483 2.089 2.256 sum 5.102 -4.390 -13.998 15.532 Atomic orbital electron populations 1.22175 0.92592 1.04319 1.03760 1.22177 0.96734 0.76536 1.05942 1.47515 1.41891 1.13583 1.04388 1.78309 1.16708 0.99196 1.11832 1.75140 1.16019 1.10207 1.12421 1.23508 1.05180 0.97977 0.91906 1.22250 1.09046 0.93879 0.91649 1.19329 0.84342 1.01905 0.85333 1.45173 1.10983 1.71933 1.12855 1.15445 0.81942 0.79195 0.81383 1.90905 1.50759 1.52496 1.53112 1.47909 1.06467 1.65816 1.15879 1.21932 0.88938 0.97173 0.93753 1.22600 0.94945 1.02017 0.95887 1.19630 0.89032 0.80663 0.89817 1.86064 1.84821 1.29639 1.38877 1.21532 1.01853 1.42307 0.91953 0.91420 1.25087 0.95380 0.94116 0.98650 1.69568 1.20446 1.46495 1.16778 0.86335 0.81015 0.78740 0.80735 1.19583 1.20740 1.20716 1.23234 0.97869 0.99594 0.80305 0.91328 0.91204 0.89427 0.87351 0.87573 0.79044 0.90489 0.88592 0.77195 0.92585 0.93369 0.90728 0.90478 0.76119 0.91875 0.92396 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.24 37.16 0.38 -0.74 16 2 C 0.11 0.72 6.90 -4.04 -0.03 0.69 16 3 N -0.28 -2.80 3.34 -57.04 -0.19 -2.99 16 4 N -0.08 -1.02 13.17 60.35 0.79 -0.23 16 5 N -0.27 -3.64 12.41 30.23 0.38 -3.26 16 6 C -0.03 -0.30 11.99 -17.74 -0.21 -0.51 16 7 C -0.04 -0.37 6.36 -82.09 -0.52 -0.89 16 8 C 0.22 2.38 5.90 -5.19 -0.03 2.35 16 9 N -0.75 -9.93 5.49 -66.41 -0.36 -10.29 16 10 C 0.72 13.26 8.49 -86.92 -0.74 12.52 16 11 O -0.59 -13.19 16.60 5.29 0.09 -13.10 16 12 N -0.62 -12.05 3.32 -176.10 -0.59 -12.64 16 13 C 0.11 1.72 6.15 -3.06 -0.02 1.70 16 14 C -0.12 -2.19 6.12 -24.90 -0.15 -2.34 16 15 C 0.25 5.81 0.89 -89.50 -0.08 5.73 16 16 O -0.58 -14.60 13.19 -35.23 -0.46 -15.07 16 17 C -0.54 -13.52 8.25 -34.44 -0.28 -13.81 16 18 H 0.07 1.67 7.77 -52.49 -0.41 1.26 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 20 N -0.89 -23.24 10.72 55.43 0.59 -22.65 16 21 Si 0.90 19.80 29.54 -169.99 -5.02 14.77 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.11 2.57 5.65 -2.40 -0.01 2.56 16 26 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.11 0.60 7.22 -51.93 -0.38 0.22 16 31 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.08 0.81 7.32 -51.93 -0.38 0.43 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.39 4.68 7.22 -40.82 -0.29 4.39 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.08 1.35 8.02 -51.93 -0.42 0.94 16 39 H 0.39 10.07 6.93 45.56 0.32 10.39 16 40 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 41 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 42 H 0.08 2.15 7.64 -51.93 -0.40 1.75 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -31.09 352.74 -6.55 -37.65 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -5.30 Total: 13.52 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -1.79 Total: 8.96 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.62 Total: -52.05 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.38 Total: -28.17 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.09 -6.55 -37.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413896665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.565 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds