Wall clock time and date at job start Fri Apr 10 2020 18:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 N 1.28713 * 125.86759 * 269.69398 * 3 2 1 5 5 N 1.28640 * 110.17305 * 179.82431 * 4 3 2 6 6 C 1.33766 * 108.88817 * 0.43800 * 5 4 3 7 7 C 1.35311 * 125.86447 * 89.99726 * 3 2 1 8 8 C 1.50698 * 126.91671 * 359.97438 * 7 3 2 9 9 N 1.46504 * 109.46940 * 274.99790 * 8 7 3 10 10 C 1.34775 * 119.99831 * 180.02562 * 9 8 7 11 11 O 1.21585 * 120.00512 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99945 * 180.02562 * 10 9 8 13 13 C 1.47023 * 125.64674 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.26977 * 181.02908 * 13 12 10 15 15 C 1.55155 * 102.94364 * 22.19205 * 14 13 12 16 16 O 1.42905 * 111.00200 * 82.57355 * 15 14 13 17 17 C 1.50696 * 111.00342 * 206.38824 * 15 14 13 18 18 H 1.07997 * 120.00012 * 359.97438 * 17 15 14 19 19 C 1.37884 * 119.99771 * 180.02562 * 17 15 14 20 20 N 1.31510 * 120.00094 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 119.99704 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47145 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46672 * 120.00064 * 21 19 17 24 24 H 1.48496 * 109.46929 * 239.99755 * 21 19 17 25 25 C 1.47422 * 125.64772 * 179.71507 * 12 10 9 26 26 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 28 28 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 30 30 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 31 31 H 1.07993 * 126.75179 * 179.75789 * 6 5 4 32 32 H 1.09001 * 109.47238 * 34.99064 * 8 7 3 33 33 H 1.08997 * 109.47587 * 154.99838 * 8 7 3 34 34 H 0.96995 * 119.99610 * 359.97438 * 9 8 7 35 35 H 1.08999 * 109.88302 * 300.44429 * 13 12 10 36 36 H 1.08995 * 109.87981 * 61.60873 * 13 12 10 37 37 H 1.08993 * 110.71847 * 140.55909 * 14 13 12 38 38 H 1.09006 * 110.71894 * 263.65572 * 14 13 12 39 39 H 0.96703 * 113.99761 * 179.97438 * 16 15 14 40 40 H 0.96996 * 119.99980 * 180.02562 * 20 19 17 41 41 H 1.08994 * 110.36728 * 274.74242 * 25 12 10 42 42 H 1.09003 * 110.36665 * 37.07024 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2750 2.0904 -1.0430 5 7 2.6826 3.2599 -0.6951 6 6 2.7074 3.3302 0.6405 7 6 2.2826 2.1287 1.0966 8 6 2.1333 1.7083 2.5360 9 7 0.7494 1.9229 2.9664 10 6 0.3802 1.6163 4.2258 11 8 1.1953 1.1612 5.0047 12 7 -0.8931 1.8132 4.6216 13 6 -1.9763 2.3525 3.7865 14 6 -3.2419 2.4224 4.6667 15 6 -2.6632 2.4500 6.1060 16 8 -2.2690 3.7733 6.4742 17 6 -3.6507 1.8884 7.0961 18 1 -4.6138 1.5359 6.7575 19 6 -3.3251 1.8255 8.4345 20 7 -2.1530 2.2562 8.8470 21 14 -4.5496 1.1300 9.6619 22 1 -5.7853 0.7179 8.9490 23 1 -3.9541 -0.0486 10.3413 24 1 -4.8822 2.1673 10.6711 25 6 -1.4317 1.5175 5.9616 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0071 4.1787 1.2374 32 1 2.3845 0.6522 2.6340 33 1 2.8035 2.3006 3.1589 34 1 0.0992 2.2863 2.3451 35 1 -1.7126 3.3505 3.4364 36 1 -2.1519 1.6936 2.9362 37 1 -3.8055 3.3322 4.4601 38 1 -3.8657 1.5413 4.5158 39 1 -1.9014 3.8403 7.3662 40 1 -1.9238 2.2116 9.7884 41 1 -1.7345 0.4725 6.0266 42 1 -0.6908 1.7471 6.7274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413896665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:39 Heat of formation + Delta-G solvation = 0.845143 kcal Electronic energy + Delta-G solvation = -26128.174555 eV Core-core repulsion = 22337.813980 eV Total energy + Delta-G solvation = -3790.360575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.39713 -41.22818 -39.13758 -36.73216 -36.05664 -35.91381 -34.13062 -32.72303 -31.71808 -31.51472 -29.58675 -27.90426 -26.43127 -25.39543 -24.12709 -23.55677 -21.63102 -21.39547 -21.07319 -19.39027 -18.95834 -18.21774 -17.67604 -17.11602 -16.95115 -16.74446 -16.25270 -16.00676 -15.72505 -15.25770 -14.98301 -14.75164 -14.62780 -14.56010 -14.10991 -13.89930 -13.71614 -13.47082 -13.26930 -13.03008 -12.85841 -12.79066 -12.51095 -12.37906 -12.29210 -12.17845 -12.08628 -11.91848 -11.42988 -11.22913 -11.15265 -10.63661 -10.40451 -10.34075 -10.23282 -9.33231 -8.24193 -6.40724 0.33396 1.31778 1.39158 1.42919 1.46578 1.56760 1.81350 2.14674 2.39688 3.02301 3.06832 3.16592 3.49916 3.75267 3.81678 3.89506 3.99284 4.12506 4.18831 4.22165 4.33688 4.37255 4.50042 4.62204 4.65532 4.70287 4.78146 4.90140 5.07022 5.10706 5.12235 5.14285 5.27978 5.31860 5.41277 5.46861 5.53353 5.79001 6.02260 6.12776 6.66658 7.02075 7.32248 7.38913 7.42041 7.53290 8.81484 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.003109 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.147128 B = 9002.908372 C = 9140.937250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.268 5.268 4 N -0.099 5.099 5 N -0.305 5.305 6 C -0.029 4.029 7 C -0.032 4.032 8 C 0.221 3.779 9 N -0.728 5.728 10 C 0.717 3.283 11 O -0.636 6.636 12 N -0.630 5.630 13 C 0.109 3.891 14 C -0.112 4.112 15 C 0.231 3.769 16 O -0.591 6.591 17 C -0.555 4.555 18 H 0.070 0.930 19 C 0.026 3.974 20 N -0.917 5.917 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.282 1.282 25 C 0.128 3.872 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.212 0.788 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.405 0.595 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.377 0.623 40 H 0.270 0.730 41 H 0.046 0.954 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.490 -4.433 -16.178 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.064 5.064 4 N -0.078 5.078 5 N -0.169 5.169 6 C -0.188 4.188 7 C -0.165 4.165 8 C 0.096 3.904 9 N -0.386 5.386 10 C 0.419 3.581 11 O -0.518 6.518 12 N -0.366 5.366 13 C -0.013 4.013 14 C -0.150 4.150 15 C 0.191 3.809 16 O -0.400 6.400 17 C -0.593 4.593 18 H 0.088 0.912 19 C -0.175 4.175 20 N -0.557 5.557 21 Si 0.790 3.210 22 H -0.187 1.187 23 H -0.209 1.209 24 H -0.208 1.208 25 C 0.004 3.996 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.228 0.772 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.241 0.759 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.228 0.772 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.067 -4.612 -17.692 18.973 hybrid contribution -0.458 -0.287 2.530 2.587 sum 4.609 -4.899 -15.163 16.587 Atomic orbital electron populations 1.22154 0.92182 1.05319 1.02732 1.22557 0.97038 0.75079 1.07594 1.47793 1.40560 1.14316 1.03718 1.78260 1.17482 0.99446 1.12648 1.75120 1.17262 1.10895 1.13603 1.23920 1.04595 0.98859 0.91441 1.22070 1.09309 0.93806 0.91274 1.19384 0.82834 1.02637 0.85568 1.44936 1.12159 1.70493 1.10980 1.15550 0.81184 0.78923 0.82406 1.90878 1.51825 1.54364 1.54757 1.47814 1.07602 1.66266 1.14961 1.22073 0.86704 0.98783 0.93768 1.22600 0.96222 1.03057 0.93093 1.19897 0.89081 0.79797 0.92159 1.86055 1.84818 1.30937 1.38184 1.21869 1.02340 1.42321 0.92752 0.91187 1.25818 0.96790 0.94494 1.00370 1.69679 1.21796 1.47330 1.16903 0.85410 0.79235 0.77829 0.78562 1.18745 1.20853 1.20752 1.22725 0.96784 0.98739 0.81373 0.92592 0.91842 0.87464 0.85579 0.86174 0.77159 0.89504 0.88462 0.75944 0.91379 0.89250 0.90019 0.89130 0.77211 0.92017 0.93611 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.24 71.98 0.74 -0.98 16 2 C 0.10 1.04 6.90 86.38 0.60 1.64 16 3 N -0.27 -4.81 3.34 -334.39 -1.12 -5.93 16 4 N -0.10 -2.35 13.17 37.02 0.49 -1.86 16 5 N -0.31 -7.76 12.41 -58.26 -0.72 -8.49 16 6 C -0.03 -0.59 11.99 83.73 1.00 0.41 16 7 C -0.03 -0.59 6.36 41.36 0.26 -0.32 16 8 C 0.22 4.39 5.90 85.63 0.50 4.90 16 9 N -0.73 -17.65 5.49 -482.30 -2.65 -20.30 16 10 C 0.72 25.71 8.49 179.05 1.52 27.23 16 11 O -0.64 -28.30 16.60 -3.98 -0.07 -28.36 16 12 N -0.63 -23.67 3.32 -829.30 -2.76 -26.43 16 13 C 0.11 3.25 6.15 86.73 0.53 3.78 16 14 C -0.11 -3.98 6.12 31.78 0.19 -3.78 16 15 C 0.23 10.75 0.89 -10.07 -0.01 10.75 16 16 O -0.59 -29.89 13.19 -148.98 -1.97 -31.86 16 17 C -0.55 -27.86 8.25 25.60 0.21 -27.65 16 18 H 0.07 3.39 7.77 -2.91 -0.02 3.37 16 19 C 0.03 1.31 5.30 84.66 0.45 1.76 16 20 N -0.92 -48.87 10.72 21.45 0.23 -48.64 16 21 Si 0.96 40.65 29.54 68.60 2.03 42.68 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.13 5.95 5.65 86.94 0.49 6.44 16 26 H 0.05 0.73 7.89 -2.39 -0.02 0.71 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.12 0.99 7.22 -2.39 -0.02 0.98 16 31 H 0.21 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.09 1.62 7.32 -2.39 -0.02 1.60 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.40 8.39 7.22 -92.71 -0.67 7.72 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.09 2.95 8.02 -2.38 -0.02 2.93 16 39 H 0.38 20.30 6.93 -74.05 -0.51 19.79 16 40 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.05 2.19 8.04 -2.39 -0.02 2.17 16 42 H 0.04 2.16 7.64 -2.39 -0.02 2.14 16 Total: -1.00 -68.57 352.74 -0.16 -68.73 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -0.12 Total: 36.29 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 6.49 Total: 24.17 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -6.53 Total: -111.65 kcal Atomic # 8 Polarization: -58.19 SS G_CDS: -2.03 Total: -60.22 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -68.57 -0.16 -68.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413896665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.575 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds