Wall clock time and date at job start Fri Apr 10 2020 18:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28520 * 124.44144 * 2 1 4 4 C 1.31131 * 109.05949 * 179.73783 * 3 2 1 5 5 C 1.40927 * 105.77608 * 0.43554 * 4 3 2 6 6 C 1.47797 * 127.23847 * 179.83678 * 5 4 3 7 7 O 1.21560 * 120.00289 * 353.07313 * 6 5 4 8 8 N 1.34785 * 120.00031 * 172.79955 * 6 5 4 9 9 C 1.46929 * 120.62858 * 353.19197 * 8 6 5 10 10 C 1.52754 * 109.00571 * 233.58332 * 9 8 6 11 11 C 1.53048 * 109.38406 * 305.58885 * 10 9 8 12 12 C 1.53040 * 109.53649 * 61.24061 * 11 10 9 13 13 C 1.53001 * 109.49381 * 178.68191 * 12 11 10 14 14 O 1.42899 * 109.46834 * 184.83760 * 13 12 11 15 15 N 1.46502 * 109.52261 * 58.60712 * 12 11 10 16 16 C 1.36934 * 119.99731 * 180.14915 * 15 12 11 17 17 H 1.07999 * 120.00159 * 359.97438 * 16 15 12 18 18 C 1.38818 * 119.99903 * 179.97438 * 16 15 12 19 19 N 1.31620 * 119.99803 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00119 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47236 * 89.99930 * 20 18 16 22 22 H 1.48497 * 109.47336 * 210.00456 * 20 18 16 23 23 H 1.48502 * 109.46767 * 330.00267 * 20 18 16 24 24 C 1.46919 * 120.62968 * 173.46934 * 8 6 5 25 25 N 1.28585 * 124.44658 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.46769 * 269.96450 * 1 2 3 27 27 H 1.08994 * 109.47373 * 29.96713 * 1 2 3 28 28 H 1.09003 * 109.47023 * 149.97043 * 1 2 3 29 29 H 1.07997 * 127.11545 * 180.27359 * 4 3 2 30 30 H 1.09000 * 109.58805 * 353.42058 * 9 8 6 31 31 H 1.08999 * 109.58059 * 113.84341 * 9 8 6 32 32 H 1.09001 * 109.56401 * 185.55401 * 10 9 8 33 33 H 1.08999 * 109.38930 * 65.51692 * 10 9 8 34 34 H 1.08997 * 109.45728 * 301.21973 * 11 10 9 35 35 H 1.09003 * 109.45784 * 181.26288 * 11 10 9 36 36 H 1.08997 * 109.47560 * 304.83972 * 13 12 11 37 37 H 1.09001 * 109.47130 * 64.84275 * 13 12 11 38 38 H 0.96705 * 114.00137 * 180.02562 * 14 13 12 39 39 H 0.97004 * 119.99942 * 0.13515 * 15 12 11 40 40 H 0.96999 * 119.99818 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.58996 * 246.15796 * 24 8 6 42 42 H 1.09003 * 109.59084 * 6.44014 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7121 0.0057 5 6 3.4660 -0.6971 -0.0010 6 6 4.6488 -1.5834 -0.0017 7 8 5.7622 -1.1109 -0.1231 8 7 4.4933 -2.9149 0.1379 9 6 3.1740 -3.4869 0.4400 10 6 3.2881 -4.3738 1.6784 11 6 4.3892 -5.4138 1.4588 12 6 5.7283 -4.7041 1.2458 13 6 6.8339 -5.7452 1.0591 14 8 8.0989 -5.0862 0.9729 15 7 6.0324 -3.8719 2.4126 16 6 7.1867 -3.1360 2.4465 17 1 7.8731 -3.1694 1.6133 18 6 7.4746 -2.3470 3.5518 19 7 8.5843 -1.6401 3.5846 20 14 6.2871 -2.2886 4.9925 21 1 6.6408 -3.3501 5.9689 22 1 6.3735 -0.9608 5.6517 23 1 4.9027 -2.5086 4.5020 24 6 5.6408 -3.8214 -0.0031 25 7 2.1924 -1.0604 -0.0005 26 1 -0.3633 -0.0006 1.0277 27 1 -0.3634 0.8902 -0.5133 28 1 -0.3633 -0.8897 -0.5143 29 1 4.3130 1.3696 0.0113 30 1 2.4626 -2.6836 0.6316 31 1 2.8334 -4.0857 -0.4048 32 1 2.3389 -4.8803 1.8533 33 1 3.5364 -3.7580 2.5428 34 1 4.1522 -6.0135 0.5801 35 1 4.4565 -6.0615 2.3329 36 1 6.8371 -6.4282 1.9086 37 1 6.6534 -6.3064 0.1423 38 1 8.8477 -5.6864 0.8533 39 1 5.4159 -3.8420 3.1609 40 1 8.7853 -1.0885 4.3567 41 1 5.5054 -4.4480 -0.8847 42 1 6.5563 -3.2388 -0.1062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484850896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:54 Heat of formation + Delta-G solvation = 42.252716 kcal Electronic energy + Delta-G solvation = -27497.817451 eV Core-core repulsion = 23709.252442 eV Total energy + Delta-G solvation = -3788.565008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.73220 -41.19455 -39.24816 -37.16154 -35.65800 -34.79040 -34.19227 -33.48295 -32.68648 -31.03040 -29.09084 -27.08663 -26.55312 -25.23409 -24.43150 -23.22264 -22.72894 -21.17273 -19.89159 -19.65097 -18.34280 -18.09007 -17.89480 -17.79666 -17.05221 -16.52085 -16.17274 -15.84419 -15.81908 -15.58137 -14.92912 -14.73611 -14.55478 -14.39513 -13.98239 -13.79732 -13.62765 -13.57230 -13.36791 -13.07299 -13.01137 -12.72794 -12.65938 -12.28616 -12.07359 -11.87687 -11.62316 -11.36528 -11.33659 -11.27145 -11.07913 -10.76502 -10.52632 -10.46629 -9.59378 -9.03581 -7.78061 -5.08144 0.20810 0.83696 1.26243 1.28323 1.34768 1.40291 2.01082 2.29494 2.58348 2.82920 3.36668 3.58504 3.66200 3.74149 3.91894 4.00832 4.10741 4.19180 4.29757 4.33054 4.33111 4.43940 4.58117 4.63187 4.66481 4.69812 4.74829 4.82017 4.90510 4.91509 5.01845 5.06641 5.16675 5.39964 5.43322 5.60948 5.78821 6.17555 6.45362 6.50308 6.98364 7.16569 7.22529 7.36818 8.03220 8.18552 9.45287 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.005942 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.606993 B = 4711.368819 C = 5420.573188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.134 5.134 3 N -0.292 5.292 4 C 0.018 3.982 5 C -0.058 4.058 6 C 0.590 3.410 7 O -0.564 6.564 8 N -0.582 5.582 9 C 0.088 3.912 10 C -0.130 4.130 11 C -0.112 4.112 12 C 0.179 3.821 13 C 0.073 3.927 14 O -0.570 6.570 15 N -0.732 5.732 16 C -0.153 4.153 17 H 0.081 0.919 18 C -0.088 4.088 19 N -0.997 5.997 20 Si 0.934 3.066 21 H -0.282 1.282 22 H -0.312 1.312 23 H -0.262 1.262 24 C 0.114 3.886 25 N -0.239 5.239 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.207 0.793 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.033 0.967 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.372 0.628 39 H 0.357 0.643 40 H 0.244 0.756 41 H 0.087 0.913 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.773 -7.676 -9.787 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.039 5.039 3 N -0.134 5.134 4 C -0.164 4.164 5 C -0.218 4.218 6 C 0.376 3.624 7 O -0.441 6.441 8 N -0.312 5.312 9 C -0.034 4.034 10 C -0.168 4.168 11 C -0.150 4.150 12 C 0.089 3.911 13 C -0.007 4.007 14 O -0.376 6.376 15 N -0.374 5.374 16 C -0.285 4.285 17 H 0.099 0.901 18 C -0.276 4.276 19 N -0.652 5.652 20 Si 0.766 3.234 21 H -0.209 1.209 22 H -0.240 1.240 23 H -0.187 1.187 24 C -0.010 4.010 25 N -0.090 5.090 26 H 0.130 0.870 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.224 0.776 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.052 0.948 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.219 0.781 39 H 0.191 0.809 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.784 -6.838 -9.858 26.639 hybrid contribution 1.536 0.281 1.344 2.060 sum -22.249 -6.557 -8.514 24.708 Atomic orbital electron populations 1.22865 0.66521 1.08445 1.07261 1.48883 1.10829 0.98729 1.45420 1.73988 1.03289 1.15999 1.20081 1.24954 0.95050 0.93826 1.02552 1.22930 0.91437 0.94965 1.12481 1.17129 0.85853 0.82338 0.77126 1.90850 1.26025 1.75399 1.51848 1.47746 1.11020 1.04453 1.68014 1.22465 0.83227 0.99450 0.98264 1.21834 1.00361 0.97421 0.97173 1.21717 0.91407 0.97581 1.04255 1.20442 0.94187 0.89942 0.86572 1.22704 0.84347 0.93989 0.99613 1.86973 1.16795 1.37408 1.96413 1.42839 1.22601 1.53620 1.18319 1.19236 0.95141 1.13225 1.00853 0.90099 1.25322 0.99234 1.01741 1.01260 1.69891 1.27923 1.36273 1.31092 0.85673 0.80364 0.75939 0.81457 1.20926 1.23983 1.18707 1.22052 0.88443 0.92217 0.98336 1.74196 1.02077 1.14974 1.17709 0.87018 0.85655 0.85092 0.77584 0.86770 0.88645 0.86924 0.94800 0.87377 0.90472 0.93764 0.91307 0.78102 0.80910 0.94720 0.89487 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.55 127.77 1.48 2.19 16 2 N -0.13 -2.99 4.35 -206.53 -0.90 -3.89 16 3 N -0.29 -8.04 12.01 -56.16 -0.67 -8.71 16 4 C 0.02 0.58 12.05 85.46 1.03 1.61 16 5 C -0.06 -2.04 6.87 42.24 0.29 -1.74 16 6 C 0.59 25.08 7.69 86.77 0.67 25.75 16 7 O -0.56 -29.99 16.38 -3.91 -0.06 -30.06 16 8 N -0.58 -20.89 2.90 -823.21 -2.38 -23.27 16 9 C 0.09 2.24 6.10 86.22 0.53 2.76 16 10 C -0.13 -3.11 5.90 30.53 0.18 -2.93 16 11 C -0.11 -2.67 4.77 30.62 0.15 -2.52 16 12 C 0.18 6.29 0.68 3.68 0.00 6.29 16 13 C 0.07 2.34 6.09 71.98 0.44 2.77 16 14 O -0.57 -23.01 10.05 -148.98 -1.50 -24.51 16 15 N -0.73 -34.29 4.55 -302.99 -1.38 -35.66 16 16 C -0.15 -9.10 8.55 84.04 0.72 -8.39 16 17 H 0.08 5.43 5.50 -2.91 -0.02 5.41 16 18 C -0.09 -5.63 5.50 84.86 0.47 -5.16 16 19 N -1.00 -70.21 13.97 21.65 0.30 -69.91 16 20 Si 0.93 49.95 27.74 68.60 1.90 51.85 16 21 H -0.28 -14.52 7.11 99.48 0.71 -13.82 16 22 H -0.31 -17.35 7.11 99.48 0.71 -16.65 16 23 H -0.26 -12.72 6.52 99.48 0.65 -12.07 16 24 C 0.11 4.25 4.92 86.36 0.42 4.68 16 25 N -0.24 -6.45 8.66 -48.17 -0.42 -6.87 16 26 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.21 6.49 8.06 -2.91 -0.02 6.47 16 30 H 0.12 2.93 4.19 -16.76 -0.07 2.86 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.03 1.07 6.76 -2.39 -0.02 1.05 16 34 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.37 11.26 9.12 -74.05 -0.68 10.59 16 39 H 0.36 16.58 4.29 -92.71 -0.40 16.18 16 40 H 0.24 16.62 8.31 -92.71 -0.77 15.85 16 41 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.05 2.66 5.82 -2.39 -0.01 2.65 16 Total: -1.00 -94.28 335.47 1.14 -93.14 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.12 Total: 32.58 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 6.37 Total: 25.31 kcal Atomic # 7 Polarization: -142.87 SS G_CDS: -5.45 Total: -148.32 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -1.56 Total: -54.57 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 1.90 Total: 51.85 kcal Total: -94.28 1.14 -93.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484850896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.391 kcal (2) G-P(sol) polarization free energy of solvation -94.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds