Wall clock time and date at job start Fri Apr 10 2020 18:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46757 * 124.35150 * 2 1 4 4 C 1.54482 * 105.47606 * 163.00422 * 3 2 1 5 5 H 1.08990 * 110.97259 * 143.56739 * 4 3 2 6 6 C 1.50695 * 110.96839 * 267.29906 * 4 3 2 7 7 O 1.21282 * 120.00232 * 359.97438 * 6 4 3 8 8 N 1.34781 * 120.00211 * 179.97438 * 6 4 3 9 9 C 1.46496 * 120.00268 * 180.02562 * 8 6 4 10 10 H 1.09003 * 110.91541 * 31.08960 * 9 8 6 11 11 C 1.54915 * 111.00147 * 267.19212 * 9 8 6 12 12 N 1.47416 * 104.83117 * 278.93743 * 11 9 8 13 13 C 1.36938 * 125.65029 * 155.90964 * 12 11 9 14 14 H 1.08001 * 120.00427 * 179.97438 * 13 12 11 15 15 C 1.38820 * 119.99956 * 359.97011 * 13 12 11 16 16 N 1.31620 * 119.99552 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00089 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47080 * 60.00378 * 17 15 13 19 19 H 1.48499 * 109.46877 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47307 * 299.99865 * 17 15 13 21 21 C 1.47021 * 108.70431 * 335.86804 * 12 11 9 22 22 C 1.54326 * 107.26995 * 1.06219 * 21 12 11 23 23 C 1.52997 * 110.72108 * 263.82672 * 22 21 12 24 24 C 1.53004 * 110.86823 * 140.62524 * 22 21 12 25 25 C 1.54641 * 101.76138 * 25.41285 * 4 3 2 26 26 C 1.34422 * 124.34555 * 180.02562 * 2 1 3 27 27 O 1.21285 * 124.94194 * 0.35359 * 26 2 1 28 28 H 1.09005 * 109.46690 * 90.00022 * 1 2 3 29 29 H 1.08997 * 109.47409 * 210.00033 * 1 2 3 30 30 H 1.08998 * 109.46889 * 330.00444 * 1 2 3 31 31 H 1.08999 * 110.24880 * 44.00074 * 3 2 1 32 32 H 1.09009 * 110.24424 * 281.99873 * 3 2 1 33 33 H 0.97001 * 119.99506 * 359.97438 * 8 6 4 34 34 H 1.09008 * 110.36669 * 37.77378 * 11 9 8 35 35 H 1.08999 * 110.36861 * 160.09195 * 11 9 8 36 36 H 0.97006 * 119.99849 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.88432 * 241.64714 * 21 12 11 38 38 H 1.09004 * 109.88387 * 120.47950 * 21 12 11 39 39 H 1.09002 * 109.47153 * 173.52226 * 23 22 21 40 40 H 1.09001 * 109.46832 * 53.52417 * 23 22 21 41 41 H 1.09004 * 109.47261 * 293.52398 * 23 22 21 42 42 H 1.09004 * 109.46981 * 183.95154 * 24 22 21 43 43 H 1.08993 * 109.47471 * 303.94655 * 24 22 21 44 44 H 1.08997 * 109.47282 * 63.95148 * 24 22 21 45 45 H 1.09002 * 110.48236 * 93.88263 * 25 4 3 46 46 H 1.08995 * 110.48507 * 216.52646 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7012 0.7485 0.4352 5 1 4.4754 1.3013 -0.0968 6 6 3.8756 0.8810 1.9261 7 8 2.9673 1.3073 2.6075 8 7 5.0410 0.5258 2.5026 9 6 5.2104 0.6540 3.9520 10 1 4.2619 0.5082 4.4690 11 6 5.8381 2.0220 4.3188 12 7 7.2842 1.8463 4.0931 13 6 8.1788 2.8494 3.8312 14 1 9.2226 2.6165 3.6804 15 6 7.7441 4.1658 3.7593 16 7 6.4722 4.4498 3.9435 17 14 8.9645 5.5343 3.4027 18 1 9.6047 5.2955 2.0842 19 1 8.2534 6.8377 3.3782 20 1 10.0054 5.5576 4.4615 21 6 7.6072 0.4158 4.1969 22 6 6.2868 -0.3330 4.4757 23 6 6.1110 -0.5801 5.9753 24 6 6.2342 -1.6518 3.7019 25 6 3.6898 -0.7380 0.0093 26 6 2.2234 -1.1099 -0.0005 27 8 1.7945 -2.2443 -0.0071 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.8987 1.9381 0.7104 32 1 2.3304 1.6430 -1.0004 33 1 5.7673 0.1844 1.9577 34 1 5.4454 2.8056 3.6706 35 1 5.6434 2.2607 5.3643 36 1 6.1684 5.3697 3.8936 37 1 8.3064 0.2521 5.0168 38 1 8.0417 0.0649 3.2607 39 1 5.1242 -1.0047 6.1603 40 1 6.2072 0.3633 6.5127 41 1 6.8762 -1.2750 6.3213 42 1 5.2660 -2.1272 3.8595 43 1 6.3737 -1.4553 2.6389 44 1 7.0254 -2.3127 4.0560 45 1 4.1191 -0.8530 -0.9860 46 1 4.2327 -1.3462 0.7327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974642970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:42 Heat of formation + Delta-G solvation = -40.107365 kcal Electronic energy + Delta-G solvation = -27289.793213 eV Core-core repulsion = 23601.197147 eV Total energy + Delta-G solvation = -3688.596066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.85692 -39.40026 -37.92946 -36.14044 -33.89660 -33.33693 -32.63077 -30.73151 -28.33077 -27.75189 -27.11423 -26.50109 -25.63765 -23.87064 -22.66910 -20.42781 -19.76762 -19.62615 -18.70313 -17.46161 -16.79798 -16.72680 -15.87212 -15.70213 -15.40410 -14.76794 -14.36621 -14.02002 -13.94475 -13.76923 -13.65795 -13.51041 -13.23447 -12.80026 -12.63819 -12.43418 -12.32010 -12.12890 -11.93483 -11.85531 -11.75421 -11.52806 -11.30210 -11.19028 -11.01280 -10.79394 -10.43850 -10.25064 -9.98968 -9.89862 -9.84614 -9.71529 -9.46197 -8.80178 -8.71436 -8.39918 -6.84887 -5.66763 -3.09776 2.50806 2.90717 2.97714 3.37003 3.42069 3.43475 3.47824 4.18970 4.27843 4.45606 4.68986 4.88156 4.97039 5.17566 5.20595 5.23122 5.27596 5.29011 5.41520 5.48309 5.49714 5.60158 5.60775 5.66872 5.72634 5.78825 5.87681 6.01893 6.09302 6.17144 6.25394 6.37964 6.39658 6.47347 6.59045 6.68116 6.72211 6.95885 7.00642 7.45345 7.58849 7.82736 7.95576 8.08641 8.34718 8.60851 9.18679 9.80117 10.44397 11.35815 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.004464 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.949125 B = 6270.419080 C = 7376.554558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.616 5.616 3 C 0.117 3.883 4 C -0.126 4.126 5 H 0.126 0.874 6 C 0.521 3.479 7 O -0.538 6.538 8 N -0.696 5.696 9 C 0.123 3.877 10 H 0.087 0.913 11 C 0.147 3.853 12 N -0.601 5.601 13 C -0.225 4.225 14 H 0.076 0.924 15 C -0.008 4.008 16 N -0.918 5.918 17 Si 0.912 3.088 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.143 3.857 22 C -0.088 4.088 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.144 4.144 26 C 0.518 3.482 27 O -0.538 6.538 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.397 0.603 34 H 0.113 0.887 35 H 0.020 0.980 36 H 0.253 0.747 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.114 0.886 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 -9.208 -7.451 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.350 5.350 3 C -0.006 4.006 4 C -0.148 4.148 5 H 0.144 0.856 6 C 0.306 3.694 7 O -0.415 6.415 8 N -0.346 5.346 9 C 0.018 3.982 10 H 0.105 0.895 11 C 0.021 3.979 12 N -0.327 5.327 13 C -0.354 4.354 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.566 5.566 17 Si 0.743 3.257 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.213 1.213 21 C 0.017 3.983 22 C -0.089 4.089 23 C -0.186 4.186 24 C -0.188 4.188 25 C -0.185 4.185 26 C 0.305 3.695 27 O -0.415 6.415 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.232 0.768 34 H 0.130 0.870 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.133 0.867 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.007 -9.241 -6.964 13.527 hybrid contribution 1.143 0.761 -0.348 1.417 sum -5.864 -8.479 -7.312 12.639 Atomic orbital electron populations 1.21520 0.77939 1.03379 1.01502 1.48079 1.06647 1.07331 1.72973 1.22037 0.88688 0.87782 1.02137 1.22343 0.99719 0.97445 0.95330 0.85609 1.19960 0.82717 0.77786 0.88978 1.90688 1.41138 1.45422 1.64292 1.45720 1.14791 1.65003 1.09052 1.22543 0.97879 0.98525 0.79282 0.89467 1.22301 0.83318 0.92891 0.99346 1.44458 1.04555 1.00218 1.83478 1.18994 0.89640 0.85665 1.41072 0.90626 1.24776 0.96337 0.97124 1.02156 1.69795 1.12808 1.17929 1.56115 0.86193 0.79931 0.81495 0.78084 1.21241 1.21617 1.21268 1.21402 0.93320 0.85997 0.97557 1.21851 0.96704 0.94438 0.95910 1.21690 1.00773 1.01957 0.94208 1.21715 1.01327 0.96284 0.99504 1.22349 0.95459 0.95510 1.05172 1.20801 0.89173 0.84381 0.75118 1.90710 1.78697 1.21123 1.50971 0.92713 0.90868 0.90747 0.88196 0.90294 0.76782 0.86979 0.96228 0.93654 0.95868 0.96034 0.93096 0.91779 0.92701 0.92851 0.92950 0.92710 0.86747 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.00 10.96 59.85 0.66 1.66 16 2 N -0.62 -7.54 3.33 -180.28 -0.60 -8.14 16 3 C 0.12 1.28 6.68 -3.12 -0.02 1.26 16 4 C -0.13 -1.45 3.54 -90.13 -0.32 -1.77 16 5 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 6 C 0.52 8.39 7.08 -10.99 -0.08 8.31 16 7 O -0.54 -10.67 15.17 5.56 0.08 -10.58 16 8 N -0.70 -11.21 4.46 -51.73 -0.23 -11.44 16 9 C 0.12 2.27 2.67 -65.78 -0.18 2.10 16 10 H 0.09 1.69 7.44 -51.93 -0.39 1.30 16 11 C 0.15 3.46 5.27 -2.53 -0.01 3.45 16 12 N -0.60 -14.41 3.39 -170.07 -0.58 -14.99 16 13 C -0.23 -6.00 10.27 -15.06 -0.15 -6.16 16 14 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 15 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 16 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 17 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.14 2.76 6.41 -3.06 -0.02 2.74 16 22 C -0.09 -1.41 0.80 -152.68 -0.12 -1.53 16 23 C -0.13 -1.93 8.40 37.16 0.31 -1.62 16 24 C -0.13 -1.69 8.12 37.16 0.30 -1.39 16 25 C -0.14 -1.52 6.40 -26.74 -0.17 -1.69 16 26 C 0.52 7.18 8.02 -10.86 -0.09 7.10 16 27 O -0.54 -9.33 17.60 5.55 0.10 -9.24 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.81 7.93 -51.93 -0.41 0.40 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.26 7.02 -51.93 -0.36 0.90 16 32 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 33 H 0.40 5.66 7.16 -40.82 -0.29 5.36 16 34 H 0.11 3.06 5.88 -51.92 -0.31 2.75 16 35 H 0.02 0.51 7.80 -51.93 -0.41 0.10 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.02 0.46 7.84 -51.93 -0.41 0.05 16 38 H 0.02 0.40 7.81 -51.93 -0.41 0.00 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.09 7.57 -51.93 -0.39 0.69 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.63 6.44 -51.93 -0.33 0.29 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.11 1.12 7.84 -51.93 -0.41 0.72 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -33.73 365.17 -7.64 -41.37 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.46 Total: 4.58 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 0.01 Total: 12.13 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.85 Total: -60.24 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.73 -7.64 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974642970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.258 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds