Wall clock time and date at job start Fri Apr 10 2020 18:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 110.91656 * 2 1 4 4 C 1.54910 * 111.00296 * 236.09849 * 2 1 3 5 5 N 1.47427 * 104.83322 * 204.91698 * 4 2 1 6 6 C 1.36935 * 125.65202 * 204.16551 * 5 4 2 7 7 H 1.08008 * 119.99543 * 354.83489 * 6 5 4 8 8 C 1.38810 * 120.00503 * 174.83246 * 6 5 4 9 9 N 1.31619 * 119.99611 * 7.06580 * 8 6 5 10 10 Si 1.86794 * 120.00375 * 187.06231 * 8 6 5 11 11 H 1.48502 * 109.47017 * 94.98685 * 10 8 6 12 12 H 1.48495 * 109.47292 * 214.98765 * 10 8 6 13 13 H 1.48502 * 109.47081 * 334.98723 * 10 8 6 14 14 C 1.47021 * 108.70080 * 24.12649 * 5 4 2 15 15 C 1.54323 * 107.27553 * 358.94319 * 14 5 4 16 16 H 1.08991 * 110.72325 * 219.26543 * 15 14 5 17 17 N 1.46502 * 110.71833 * 96.16581 * 15 14 5 18 18 C 1.34780 * 120.00003 * 86.46242 * 17 15 14 19 19 O 1.21285 * 119.99783 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99942 * 179.97438 * 18 17 15 21 21 C 1.53001 * 109.46990 * 179.97438 * 20 18 17 22 22 H 1.09000 * 110.43112 * 307.54320 * 21 20 18 23 23 C 1.54622 * 110.48823 * 184.99982 * 21 20 18 24 24 C 1.54480 * 101.76596 * 216.52573 * 23 21 20 25 25 N 1.46761 * 105.47375 * 25.41244 * 24 23 21 26 26 C 1.34419 * 111.30338 * 342.98712 * 25 24 23 27 27 O 1.21280 * 124.94650 * 180.44460 * 26 25 24 28 28 H 1.08998 * 109.47194 * 296.09574 * 1 2 3 29 29 H 1.09003 * 109.46958 * 56.09821 * 1 2 3 30 30 H 1.09005 * 109.47275 * 176.09936 * 1 2 3 31 31 H 1.08999 * 109.47382 * 183.90141 * 3 2 1 32 32 H 1.08999 * 109.47129 * 303.90100 * 3 2 1 33 33 H 1.08997 * 109.47219 * 63.90573 * 3 2 1 34 34 H 1.09000 * 110.36454 * 86.07811 * 4 2 1 35 35 H 1.09001 * 110.45978 * 323.80154 * 4 2 1 36 36 H 0.97000 * 120.00216 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.88564 * 239.52128 * 14 5 4 38 38 H 1.09005 * 110.01099 * 118.43185 * 14 5 4 39 39 H 0.96994 * 120.00099 * 266.45206 * 17 15 14 40 40 H 1.08998 * 109.47175 * 59.99854 * 20 18 17 41 41 H 1.09002 * 109.47193 * 299.99363 * 20 18 17 42 42 H 1.09006 * 110.96887 * 334.63905 * 23 21 20 43 43 H 1.08998 * 110.97174 * 98.36931 * 23 21 20 44 44 H 1.08996 * 110.24755 * 144.41456 * 24 23 21 45 45 H 1.09003 * 110.24196 * 266.41705 * 24 23 21 46 46 H 0.97003 * 124.35199 * 162.98516 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4644 -1.5654 -1.6072 7 1 4.3104 -1.5905 -2.6759 8 6 5.7139 -1.8598 -1.0790 9 7 5.8692 -1.9659 0.2237 10 14 7.1747 -2.1056 -2.2168 11 1 7.9221 -0.8288 -2.3456 12 1 8.0699 -3.1486 -1.6549 13 1 6.6935 -2.5346 -3.5546 14 6 3.4674 -1.2742 0.6959 15 6 2.0861 -0.8079 1.2022 16 1 2.1920 -0.1726 2.0814 17 7 1.2268 -1.9575 1.4962 18 6 1.2806 -2.5469 2.7070 19 8 2.0408 -2.1260 3.5532 20 6 0.3962 -3.7291 3.0096 21 6 0.6526 -4.2047 4.4410 22 1 1.7175 -4.3740 4.6007 23 6 -0.1504 -5.4928 4.7353 24 6 -0.5528 -5.2827 6.2119 25 7 -0.5562 -3.8291 6.4137 26 6 0.1185 -3.1988 5.4368 27 8 0.2766 -1.9985 5.3645 28 1 -0.3633 0.4520 0.9229 29 1 -0.3633 0.5732 -0.8530 30 1 -0.3634 -1.0253 -0.0699 31 1 3.1636 1.4025 -0.0699 32 1 1.6705 1.9731 -0.8530 33 1 1.7837 1.9299 0.9229 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4043 36 1 6.7423 -2.1712 0.5930 37 1 4.2426 -0.5998 1.0599 38 1 3.6662 -2.2884 1.0423 39 1 0.6191 -2.2943 0.8194 40 1 0.6192 -4.5373 2.3131 41 1 -0.6488 -3.4372 2.9050 42 1 -1.0312 -5.5580 4.0964 43 1 0.4765 -6.3775 4.6233 44 1 -1.5469 -5.6911 6.3937 45 1 0.1758 -5.7535 6.8720 46 1 -0.9896 -3.3807 7.1567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974667337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:00 Heat of formation + Delta-G solvation = -47.296947 kcal Electronic energy + Delta-G solvation = -26947.802796 eV Core-core repulsion = 23258.894967 eV Total energy + Delta-G solvation = -3688.907830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57215 -39.35972 -37.64940 -36.28918 -33.74752 -32.96771 -32.76075 -30.63748 -29.25274 -27.93115 -26.81698 -25.66343 -25.46434 -23.21154 -22.05864 -20.75139 -19.90112 -19.44310 -18.54338 -17.37701 -16.85170 -16.65081 -16.30718 -15.64030 -14.98198 -14.61123 -14.42730 -13.94764 -13.82281 -13.71693 -13.67600 -13.30232 -13.15054 -12.77710 -12.59050 -12.33159 -12.13753 -11.89708 -11.71907 -11.67682 -11.48373 -11.25596 -11.09806 -10.97821 -10.91110 -10.73847 -10.29152 -10.14469 -9.88377 -9.79865 -9.62355 -9.58223 -9.21111 -9.12917 -8.53200 -8.22032 -6.75105 -5.63770 -2.97451 2.72570 3.26003 3.31720 3.43902 3.48821 3.51320 3.69604 4.24698 4.32551 4.54761 4.56535 4.85928 5.04932 5.07798 5.18187 5.29301 5.35754 5.38025 5.42648 5.54923 5.57929 5.60404 5.69084 5.74496 5.91464 5.97137 6.01233 6.13237 6.25820 6.30287 6.35996 6.51277 6.68142 6.70563 6.76917 6.77435 6.91164 6.95941 7.10460 7.65207 7.76356 7.92217 8.15303 8.33102 8.34864 8.90660 9.28466 9.89476 10.56244 11.46899 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.003884 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.117567 B = 7207.478069 C = 8232.947126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.126 4.126 4 C 0.145 3.855 5 N -0.603 5.603 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.915 5.915 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.176 3.824 15 C 0.128 3.872 16 H 0.085 0.915 17 N -0.715 5.715 18 C 0.508 3.492 19 O -0.517 6.517 20 C -0.123 4.123 21 C -0.108 4.108 22 H 0.118 0.882 23 C -0.132 4.132 24 C 0.103 3.897 25 N -0.744 5.744 26 C 0.519 3.481 27 O -0.500 6.500 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.014 0.986 36 H 0.252 0.748 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.391 0.609 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 -6.594 7.991 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.019 3.981 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.094 0.906 8 C -0.202 4.202 9 N -0.562 5.562 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.051 3.949 15 C 0.023 3.977 16 H 0.103 0.897 17 N -0.367 5.367 18 C 0.293 3.707 19 O -0.392 6.392 20 C -0.164 4.164 21 C -0.130 4.130 22 H 0.136 0.864 23 C -0.169 4.169 24 C -0.022 4.022 25 N -0.402 5.402 26 C 0.304 3.696 27 O -0.372 6.372 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.226 0.774 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -16.403 -5.751 8.489 19.344 hybrid contribution 0.358 -0.338 -0.542 0.732 sum -16.045 -6.089 7.947 18.912 Atomic orbital electron populations 1.21665 0.94859 1.00957 1.01271 1.21994 0.94351 0.96035 0.96729 1.21592 1.02474 0.93828 1.00431 1.21615 0.87799 0.94423 0.94306 1.44451 1.07820 1.78730 1.01922 1.19022 0.87525 1.40264 0.89070 0.90551 1.24821 0.97525 1.02005 0.95894 1.69998 1.22464 1.54302 1.09446 0.86168 0.83029 0.77367 0.79608 1.21680 1.21873 1.20742 1.21502 0.89975 1.00319 0.83152 1.22386 0.92215 0.86394 0.96719 0.89700 1.45947 1.43085 1.33411 1.14285 1.20226 0.83884 0.84400 0.82182 1.90744 1.38845 1.63633 1.45971 1.21513 1.00725 0.98082 0.96075 1.21724 1.02901 0.94245 0.94167 0.86362 1.22721 1.00871 0.97871 0.95474 1.21997 1.01934 0.81158 0.97063 1.46258 1.57323 1.08134 1.28459 1.20764 0.77424 0.88776 0.82614 1.90824 1.56884 1.14206 1.75258 0.92851 0.92794 0.93121 0.91238 0.93001 0.93365 0.94229 0.96835 0.93752 0.92957 0.93656 0.77432 0.88084 0.89285 0.89787 0.88920 0.90517 0.91231 0.75558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.22 37.16 0.31 -1.49 16 2 C -0.09 -1.57 0.83 -152.36 -0.13 -1.70 16 3 C -0.13 -2.15 8.57 37.15 0.32 -1.83 16 4 C 0.14 2.95 6.14 -2.53 -0.02 2.93 16 5 N -0.60 -15.38 3.38 -170.07 -0.57 -15.96 16 6 C -0.23 -6.47 10.27 -15.06 -0.15 -6.63 16 7 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 8 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 9 N -0.92 -27.77 10.36 55.49 0.57 -27.20 16 10 Si 0.91 22.46 29.56 -169.99 -5.02 17.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.18 4.48 4.80 -3.06 -0.01 4.46 16 15 C 0.13 2.59 2.51 -66.09 -0.17 2.43 16 16 H 0.08 1.86 7.60 -51.93 -0.39 1.47 16 17 N -0.72 -12.47 4.57 -52.03 -0.24 -12.71 16 18 C 0.51 9.12 7.29 -10.98 -0.08 9.04 16 19 O -0.52 -11.69 13.77 -15.87 -0.22 -11.90 16 20 C -0.12 -1.50 5.09 -27.88 -0.14 -1.65 16 21 C -0.11 -1.27 2.54 -90.63 -0.23 -1.50 16 22 H 0.12 1.58 7.90 -51.93 -0.41 1.17 16 23 C -0.13 -0.88 6.70 -25.10 -0.17 -1.05 16 24 C 0.10 0.64 7.78 -3.12 -0.02 0.61 16 25 N -0.74 -7.11 6.24 -59.20 -0.37 -7.48 16 26 C 0.52 7.33 7.70 -10.86 -0.08 7.25 16 27 O -0.50 -9.70 15.62 -15.87 -0.25 -9.95 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.63 6.38 -51.93 -0.33 0.30 16 31 H 0.07 1.39 7.91 -51.93 -0.41 0.98 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 35 H 0.01 0.27 7.99 -51.93 -0.41 -0.14 16 36 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.05 1.51 7.30 -51.93 -0.38 1.14 16 38 H 0.05 1.31 7.51 -51.93 -0.39 0.92 16 39 H 0.39 5.76 6.90 -40.82 -0.28 5.48 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 42 H 0.08 0.46 7.91 -51.93 -0.41 0.04 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.41 3.29 8.96 -40.82 -0.37 2.92 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -37.16 362.56 -8.87 -46.03 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.56 Total: 5.63 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -0.68 Total: 10.64 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.61 Total: -63.35 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.47 Total: -21.85 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.16 -8.87 -46.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974667337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.263 kcal (2) G-P(sol) polarization free energy of solvation -37.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds