Wall clock time and date at job start Fri Apr 10 2020 18:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 110.91656 * 2 1 4 4 C 1.54910 * 111.00296 * 236.09849 * 2 1 3 5 5 N 1.47427 * 104.83322 * 204.91698 * 4 2 1 6 6 C 1.36935 * 125.65202 * 204.16551 * 5 4 2 7 7 H 1.08008 * 119.99543 * 354.83489 * 6 5 4 8 8 C 1.38810 * 120.00503 * 174.83246 * 6 5 4 9 9 N 1.31619 * 119.99611 * 7.06580 * 8 6 5 10 10 Si 1.86794 * 120.00375 * 187.06231 * 8 6 5 11 11 H 1.48502 * 109.47017 * 94.98685 * 10 8 6 12 12 H 1.48495 * 109.47292 * 214.98765 * 10 8 6 13 13 H 1.48502 * 109.47081 * 334.98723 * 10 8 6 14 14 C 1.47021 * 108.70080 * 24.12649 * 5 4 2 15 15 C 1.54323 * 107.27553 * 358.94319 * 14 5 4 16 16 H 1.08991 * 110.72325 * 219.26543 * 15 14 5 17 17 N 1.46502 * 110.71833 * 96.16581 * 15 14 5 18 18 C 1.34780 * 120.00003 * 86.46242 * 17 15 14 19 19 O 1.21285 * 119.99783 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99942 * 179.97438 * 18 17 15 21 21 C 1.53001 * 109.46990 * 179.97438 * 20 18 17 22 22 H 1.09000 * 110.43112 * 307.54320 * 21 20 18 23 23 C 1.54622 * 110.48823 * 184.99982 * 21 20 18 24 24 C 1.54480 * 101.76596 * 216.52573 * 23 21 20 25 25 N 1.46761 * 105.47375 * 25.41244 * 24 23 21 26 26 C 1.34419 * 111.30338 * 342.98712 * 25 24 23 27 27 O 1.21280 * 124.94650 * 180.44460 * 26 25 24 28 28 H 1.08998 * 109.47194 * 296.09574 * 1 2 3 29 29 H 1.09003 * 109.46958 * 56.09821 * 1 2 3 30 30 H 1.09005 * 109.47275 * 176.09936 * 1 2 3 31 31 H 1.08999 * 109.47382 * 183.90141 * 3 2 1 32 32 H 1.08999 * 109.47129 * 303.90100 * 3 2 1 33 33 H 1.08997 * 109.47219 * 63.90573 * 3 2 1 34 34 H 1.09000 * 110.36454 * 86.07811 * 4 2 1 35 35 H 1.09001 * 110.45978 * 323.80154 * 4 2 1 36 36 H 0.97000 * 120.00216 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.88564 * 239.52128 * 14 5 4 38 38 H 1.09005 * 110.01099 * 118.43185 * 14 5 4 39 39 H 0.96994 * 120.00099 * 266.45206 * 17 15 14 40 40 H 1.08998 * 109.47175 * 59.99854 * 20 18 17 41 41 H 1.09002 * 109.47193 * 299.99363 * 20 18 17 42 42 H 1.09006 * 110.96887 * 334.63905 * 23 21 20 43 43 H 1.08998 * 110.97174 * 98.36931 * 23 21 20 44 44 H 1.08996 * 110.24755 * 144.41456 * 24 23 21 45 45 H 1.09003 * 110.24196 * 266.41705 * 24 23 21 46 46 H 0.97003 * 124.35199 * 162.98516 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4644 -1.5654 -1.6072 7 1 4.3104 -1.5905 -2.6759 8 6 5.7139 -1.8598 -1.0790 9 7 5.8692 -1.9659 0.2237 10 14 7.1747 -2.1056 -2.2168 11 1 7.9221 -0.8288 -2.3456 12 1 8.0699 -3.1486 -1.6549 13 1 6.6935 -2.5346 -3.5546 14 6 3.4674 -1.2742 0.6959 15 6 2.0861 -0.8079 1.2022 16 1 2.1920 -0.1726 2.0814 17 7 1.2268 -1.9575 1.4962 18 6 1.2806 -2.5469 2.7070 19 8 2.0408 -2.1260 3.5532 20 6 0.3962 -3.7291 3.0096 21 6 0.6526 -4.2047 4.4410 22 1 1.7175 -4.3740 4.6007 23 6 -0.1504 -5.4928 4.7353 24 6 -0.5528 -5.2827 6.2119 25 7 -0.5562 -3.8291 6.4137 26 6 0.1185 -3.1988 5.4368 27 8 0.2766 -1.9985 5.3645 28 1 -0.3633 0.4520 0.9229 29 1 -0.3633 0.5732 -0.8530 30 1 -0.3634 -1.0253 -0.0699 31 1 3.1636 1.4025 -0.0699 32 1 1.6705 1.9731 -0.8530 33 1 1.7837 1.9299 0.9229 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4043 36 1 6.7423 -2.1712 0.5930 37 1 4.2426 -0.5998 1.0599 38 1 3.6662 -2.2884 1.0423 39 1 0.6191 -2.2943 0.8194 40 1 0.6192 -4.5373 2.3131 41 1 -0.6488 -3.4372 2.9050 42 1 -1.0312 -5.5580 4.0964 43 1 0.4765 -6.3775 4.6233 44 1 -1.5469 -5.6911 6.3937 45 1 0.1758 -5.7535 6.8720 46 1 -0.9896 -3.3807 7.1567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974667337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:59 Heat of formation + Delta-G solvation = -75.730545 kcal Electronic energy + Delta-G solvation = -26949.035770 eV Core-core repulsion = 23258.894967 eV Total energy + Delta-G solvation = -3690.140803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.63218 -40.80598 -39.19059 -37.29689 -35.65485 -34.39029 -33.85107 -32.61152 -30.32381 -29.38314 -28.10358 -27.44035 -26.65362 -24.93642 -22.70547 -22.40672 -21.43669 -20.67321 -19.99975 -18.66839 -18.32413 -17.93971 -17.45400 -17.20574 -16.66995 -15.90424 -15.69140 -15.61546 -15.37595 -15.03525 -14.73623 -14.58140 -14.44510 -13.97767 -13.77565 -13.55174 -13.41512 -13.32597 -13.12987 -12.98900 -12.87382 -12.72989 -12.67148 -12.58296 -12.31813 -12.07773 -11.85024 -11.84178 -11.73617 -11.48838 -11.29733 -10.83652 -10.71462 -10.52178 -9.97386 -9.84287 -8.87967 -7.83203 -5.19313 1.43891 1.46862 1.55606 1.67911 1.90954 2.35402 2.50112 2.52639 3.34659 3.47947 3.51273 3.55487 3.74110 3.86837 3.98347 4.02258 4.09248 4.33365 4.41143 4.45789 4.49270 4.55162 4.67830 4.76228 4.83621 4.84385 4.88775 4.89628 4.95024 5.06218 5.13743 5.14627 5.16724 5.27317 5.34275 5.39167 5.47816 5.56318 5.74007 5.83343 6.00851 6.11050 6.18415 6.76109 7.08763 7.39466 7.53632 7.78938 8.44516 9.26516 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.003884 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.117567 B = 7207.478069 C = 8232.947126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.124 4.124 4 C 0.141 3.859 5 N -0.620 5.620 6 C -0.238 4.238 7 H 0.089 0.911 8 C -0.069 4.069 9 N -0.953 5.953 10 Si 0.977 3.023 11 H -0.290 1.290 12 H -0.299 1.299 13 H -0.261 1.261 14 C 0.197 3.803 15 C 0.140 3.860 16 H 0.060 0.940 17 N -0.706 5.706 18 C 0.495 3.505 19 O -0.573 6.573 20 C -0.113 4.113 21 C -0.114 4.114 22 H 0.091 0.909 23 C -0.117 4.117 24 C 0.098 3.902 25 N -0.731 5.731 26 C 0.505 3.495 27 O -0.568 6.568 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.243 0.757 37 H -0.001 1.001 38 H -0.001 1.001 39 H 0.409 0.591 40 H 0.131 0.869 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.868 -8.395 6.477 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.181 4.181 4 C 0.016 3.984 5 N -0.346 5.346 6 C -0.367 4.367 7 H 0.106 0.894 8 C -0.262 4.262 9 N -0.602 5.602 10 Si 0.805 3.195 11 H -0.218 1.218 12 H -0.226 1.226 13 H -0.185 1.185 14 C 0.071 3.929 15 C 0.034 3.966 16 H 0.078 0.922 17 N -0.359 5.359 18 C 0.283 3.717 19 O -0.451 6.451 20 C -0.153 4.153 21 C -0.136 4.136 22 H 0.109 0.891 23 C -0.154 4.154 24 C -0.025 4.025 25 N -0.387 5.387 26 C 0.291 3.709 27 O -0.445 6.445 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.246 0.754 40 H 0.149 0.851 41 H 0.136 0.864 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.099 0.901 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.001 -7.613 6.946 22.500 hybrid contribution 1.438 0.207 -0.022 1.453 sum -18.563 -7.407 6.925 21.152 Atomic orbital electron populations 1.21629 0.90813 1.02762 1.02707 1.21981 0.97315 0.95120 0.93331 1.21588 0.99927 0.94271 1.02359 1.21872 0.85471 0.95477 0.95545 1.44691 1.09580 1.78678 1.01644 1.19503 0.88383 1.38816 0.89972 0.89351 1.25712 1.00519 1.02714 0.97241 1.70277 1.22265 1.56119 1.11583 0.85074 0.79211 0.76769 0.78403 1.21751 1.22566 1.18537 1.21018 0.91868 0.96343 0.83675 1.21918 0.90494 0.87452 0.96767 0.92193 1.45814 1.42537 1.32603 1.14966 1.21423 0.83692 0.85310 0.81302 1.90724 1.41343 1.65414 1.47610 1.21595 1.00637 0.95989 0.97078 1.21769 1.02199 0.96317 0.93324 0.89052 1.22794 1.01175 0.95485 0.95992 1.22347 1.04387 0.78726 0.97054 1.46314 1.55331 1.09763 1.27248 1.21296 0.77362 0.88307 0.83887 1.90781 1.59631 1.17042 1.77081 0.92427 0.90182 0.91358 0.95288 0.90065 0.92259 0.93320 0.94710 0.94812 0.98326 0.98309 0.75388 0.85057 0.86387 0.87323 0.86866 0.86975 0.90127 0.74867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 8.22 71.98 0.59 -2.32 16 2 C -0.08 -2.59 0.83 -50.79 -0.04 -2.63 16 3 C -0.12 -4.18 8.57 71.98 0.62 -3.56 16 4 C 0.14 5.53 6.14 86.86 0.53 6.07 16 5 N -0.62 -32.43 3.38 -691.97 -2.34 -34.77 16 6 C -0.24 -13.57 10.27 84.03 0.86 -12.70 16 7 H 0.09 4.72 7.84 -2.91 -0.02 4.70 16 8 C -0.07 -4.10 5.48 84.86 0.46 -3.63 16 9 N -0.95 -61.49 10.36 21.65 0.22 -61.26 16 10 Si 0.98 47.35 29.56 68.60 2.03 49.37 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 14 C 0.20 10.75 4.80 86.73 0.42 11.17 16 15 C 0.14 5.92 2.51 46.18 0.12 6.04 16 16 H 0.06 2.84 7.60 -2.39 -0.02 2.82 16 17 N -0.71 -24.66 4.57 -436.91 -2.00 -26.65 16 18 C 0.50 18.24 7.29 87.66 0.64 18.88 16 19 O -0.57 -27.81 13.77 17.44 0.24 -27.57 16 20 C -0.11 -2.57 5.09 29.85 0.15 -2.42 16 21 C -0.11 -2.56 2.54 -10.80 -0.03 -2.59 16 22 H 0.09 2.55 7.90 -2.39 -0.02 2.53 16 23 C -0.12 -1.12 6.70 31.65 0.21 -0.91 16 24 C 0.10 0.85 7.78 86.83 0.68 1.53 16 25 N -0.73 -12.87 6.24 -459.80 -2.87 -15.74 16 26 C 0.51 14.35 7.70 87.90 0.68 15.03 16 27 O -0.57 -23.21 15.62 17.46 0.27 -22.93 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.41 6.38 -2.38 -0.02 1.39 16 31 H 0.03 1.19 7.91 -2.39 -0.02 1.17 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.84 8.05 -2.39 -0.02 1.82 16 35 H 0.04 1.26 7.99 -2.39 -0.02 1.24 16 36 H 0.24 15.37 8.31 -92.71 -0.77 14.59 16 37 H 0.00 -0.09 7.30 -2.39 -0.02 -0.11 16 38 H 0.00 -0.08 7.51 -2.38 -0.02 -0.10 16 39 H 0.41 11.17 6.90 -92.71 -0.64 10.53 16 40 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.12 2.03 8.12 -2.39 -0.02 2.02 16 42 H 0.11 0.58 7.91 -2.38 -0.02 0.56 16 43 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.41 6.19 8.96 -92.71 -0.83 5.36 16 Total: -1.00 -91.56 362.56 0.97 -90.59 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -0.48 Total: 21.03 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: 5.89 Total: 27.94 kcal Atomic # 7 Polarization: -131.44 SS G_CDS: -6.98 Total: -138.42 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: 0.51 Total: -50.51 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Total: -91.56 0.97 -90.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974667337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.864 kcal (2) G-P(sol) polarization free energy of solvation -91.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds