Wall clock time and date at job start Fri Apr 10 2020 18:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 110.88964 * 2 1 4 4 C 1.55135 * 111.19217 * 236.06169 * 2 1 3 5 5 N 1.47425 * 104.72408 * 279.19374 * 4 2 1 6 6 C 1.36931 * 125.64390 * 155.81244 * 5 4 2 7 7 H 1.08000 * 120.00880 * 349.68471 * 6 5 4 8 8 C 1.38817 * 119.99788 * 169.67405 * 6 5 4 9 9 N 1.31622 * 120.00268 * 164.77527 * 8 6 5 10 10 Si 1.86800 * 120.00030 * 344.78389 * 8 6 5 11 11 H 1.48500 * 109.47232 * 185.52413 * 10 8 6 12 12 H 1.48498 * 109.46862 * 305.52501 * 10 8 6 13 13 H 1.48505 * 109.47151 * 65.52136 * 10 8 6 14 14 C 1.47022 * 108.70162 * 335.55419 * 5 4 2 15 15 C 1.54323 * 107.27207 * 1.28554 * 14 5 4 16 16 H 1.09003 * 110.71723 * 140.55792 * 15 14 5 17 17 N 1.46499 * 110.71747 * 263.83087 * 15 14 5 18 18 C 1.34780 * 119.99725 * 273.54192 * 17 15 14 19 19 O 1.21275 * 120.00386 * 0.02562 * 18 17 15 20 20 C 1.50705 * 119.99821 * 179.97438 * 18 17 15 21 21 C 1.53002 * 109.47056 * 180.02562 * 20 18 17 22 22 H 1.08997 * 110.43415 * 303.91581 * 21 20 18 23 23 C 1.54623 * 110.48281 * 181.23160 * 21 20 18 24 24 C 1.54483 * 101.76581 * 266.12262 * 23 21 20 25 25 N 1.46764 * 105.47218 * 334.58222 * 24 23 21 26 26 C 1.34417 * 111.29882 * 17.02027 * 25 24 23 27 27 O 1.21281 * 124.94244 * 179.54861 * 26 25 24 28 28 H 1.09003 * 109.47080 * 296.12517 * 1 2 3 29 29 H 1.09005 * 109.46626 * 56.12166 * 1 2 3 30 30 H 1.08999 * 109.47456 * 176.11662 * 1 2 3 31 31 H 1.09001 * 109.47339 * 183.88524 * 3 2 1 32 32 H 1.09002 * 109.46920 * 303.87746 * 3 2 1 33 33 H 1.08998 * 109.47292 * 63.87786 * 3 2 1 34 34 H 1.09004 * 110.49734 * 160.35147 * 4 2 1 35 35 H 1.09003 * 110.34166 * 37.96372 * 4 2 1 36 36 H 0.97004 * 119.99569 * 354.98170 * 9 8 6 37 37 H 1.08999 * 109.88171 * 120.70332 * 14 5 4 38 38 H 1.09003 * 109.87759 * 241.86703 * 14 5 4 39 39 H 0.97002 * 120.00343 * 93.55132 * 17 15 14 40 40 H 1.08994 * 109.47280 * 300.00784 * 20 18 17 41 41 H 1.09006 * 109.46442 * 60.00675 * 20 18 17 42 42 H 1.08994 * 110.97394 * 24.23937 * 23 21 20 43 43 H 1.09000 * 110.97194 * 148.00541 * 23 21 20 44 44 H 1.09008 * 110.24372 * 215.58787 * 24 23 21 45 45 H 1.08992 * 110.24873 * 93.58665 * 24 23 21 46 46 H 0.96998 * 124.35454 * 197.03060 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8075 -1.2000 5 7 2.0138 -2.2163 -0.7724 6 6 1.9459 -3.3006 -1.6058 7 1 1.7782 -3.1594 -2.6633 8 6 2.0927 -4.5816 -1.0914 9 7 1.7366 -5.6246 -1.8110 10 14 2.7954 -4.8252 0.6221 11 1 2.9734 -6.2763 0.8825 12 1 4.1092 -4.1399 0.7203 13 1 1.8624 -4.2529 1.6258 14 6 2.0284 -2.2644 0.6970 15 6 2.0861 -0.8074 1.2026 16 1 1.4522 -0.6784 2.0799 17 7 3.4666 -0.4151 1.4964 18 6 3.9979 -0.6753 2.7074 19 8 3.3333 -1.2346 3.5537 20 6 5.4183 -0.2722 3.0094 21 6 5.7708 -0.6807 4.4412 22 1 5.0621 -0.2464 5.1463 23 6 7.2152 -0.2500 4.7866 24 6 8.0148 -1.5271 4.4455 25 7 7.0598 -2.6338 4.5770 26 6 5.7918 -2.1877 4.5718 27 8 4.8076 -2.8912 4.6584 28 1 -0.3633 0.4525 0.9227 29 1 -0.3633 0.5729 -0.8533 30 1 -0.3634 -1.0253 -0.0696 31 1 3.1630 1.4033 -0.0696 32 1 1.6698 1.9731 -0.8532 33 1 1.7823 1.9302 0.9227 34 1 3.1253 -0.5273 -1.3986 35 1 1.4764 -0.6458 -2.0858 36 1 1.3047 -5.4965 -2.6701 37 1 1.1217 -2.7475 1.0611 38 1 2.9062 -2.8113 1.0412 39 1 3.9983 0.0321 0.8194 40 1 6.0931 -0.7701 2.3132 41 1 5.5195 0.8080 2.9040 42 1 7.5323 0.5866 4.1641 43 1 7.3063 -0.0037 5.8445 44 1 8.8390 -1.6547 5.1474 45 1 8.3925 -1.4742 3.4245 46 1 7.3113 -3.5671 4.6576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974667338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:08 Heat of formation + Delta-G solvation = -37.049137 kcal Electronic energy + Delta-G solvation = -27442.808094 eV Core-core repulsion = 23754.344643 eV Total energy + Delta-G solvation = -3688.463451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71934 -39.68143 -37.96412 -36.32582 -34.00740 -33.11242 -32.86046 -31.26896 -29.39590 -28.19612 -27.02963 -26.06203 -25.77251 -23.00872 -21.97953 -20.91531 -20.36188 -19.78617 -18.90589 -17.47611 -17.25492 -16.85642 -16.22314 -15.77268 -15.60949 -15.09575 -14.48622 -14.20608 -13.96801 -13.81625 -13.62963 -13.42891 -13.34278 -12.87417 -12.83094 -12.73937 -12.57823 -12.29829 -12.07491 -11.95164 -11.63933 -11.49918 -11.42145 -11.15037 -10.99744 -10.67040 -10.59393 -10.13103 -10.06953 -9.68484 -9.38730 -9.37419 -9.13492 -8.95225 -8.67697 -8.43678 -6.95859 -6.23954 -3.15283 2.71734 2.94566 3.31550 3.38298 3.61078 3.69433 3.83272 4.19564 4.24094 4.45863 4.70782 4.72787 4.77604 4.87284 5.00454 5.12770 5.14190 5.17364 5.24366 5.30572 5.34862 5.50922 5.52006 5.57830 5.61005 5.75486 5.80876 5.82358 5.94795 6.03167 6.07798 6.16363 6.33444 6.44582 6.50944 6.57930 6.68662 6.79335 6.81402 6.99136 7.01194 7.71237 7.80788 8.37903 8.39731 8.56693 9.10424 9.63284 10.29606 11.26642 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.005500 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.946567 B = 5090.091775 C = 6511.212492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.145 3.855 5 N -0.610 5.610 6 C -0.321 4.321 7 H 0.078 0.922 8 C -0.018 4.018 9 N -0.929 5.929 10 Si 1.069 2.931 11 H -0.304 1.304 12 H -0.303 1.303 13 H -0.284 1.284 14 C 0.105 3.895 15 C 0.145 3.855 16 H 0.094 0.906 17 N -0.718 5.718 18 C 0.497 3.503 19 O -0.507 6.507 20 C -0.125 4.125 21 C -0.108 4.108 22 H 0.112 0.888 23 C -0.130 4.130 24 C 0.101 3.899 25 N -0.743 5.743 26 C 0.513 3.487 27 O -0.489 6.489 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.046 0.954 36 H 0.261 0.739 37 H 0.051 0.949 38 H 0.036 0.964 39 H 0.396 0.604 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.384 18.440 10.897 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.187 4.187 4 C 0.019 3.981 5 N -0.338 5.338 6 C -0.448 4.448 7 H 0.096 0.904 8 C -0.217 4.217 9 N -0.570 5.570 10 Si 0.904 3.096 11 H -0.232 1.232 12 H -0.233 1.233 13 H -0.211 1.211 14 C -0.021 4.021 15 C 0.040 3.960 16 H 0.112 0.888 17 N -0.371 5.371 18 C 0.281 3.719 19 O -0.381 6.381 20 C -0.166 4.166 21 C -0.130 4.130 22 H 0.130 0.870 23 C -0.168 4.168 24 C -0.023 4.023 25 N -0.402 5.402 26 C 0.297 3.703 27 O -0.359 6.359 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.231 0.769 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 11.742 16.519 12.579 23.854 hybrid contribution 0.231 0.944 -1.548 1.828 sum 11.974 17.463 11.031 23.875 Atomic orbital electron populations 1.21614 0.93021 1.03014 1.00853 1.22079 0.96569 0.94422 0.96011 1.21662 1.00264 0.95197 1.01610 1.21681 0.96797 0.85138 0.94468 1.44799 1.87492 1.01441 1.00046 1.20134 1.48570 0.84593 0.91472 0.90388 1.25761 0.99980 0.90649 1.05336 1.70907 1.41431 1.30302 1.14408 0.83837 0.76478 0.73532 0.75768 1.23221 1.23269 1.21090 1.22393 0.99545 0.94362 0.85786 1.21967 0.82088 0.94573 0.97383 0.88811 1.45990 1.14803 1.61648 1.14679 1.20516 0.89096 0.79727 0.82511 1.90844 1.61769 1.39312 1.46201 1.21547 0.95253 1.03417 0.96373 1.21702 0.98378 0.94748 0.98159 0.86968 1.22697 0.93498 0.97541 1.03091 1.22012 0.92268 0.86342 1.01728 1.46284 1.07325 1.09919 1.76670 1.20735 0.82829 0.90737 0.75976 1.90873 1.36086 1.62443 1.46544 0.93074 0.92549 0.91306 0.92934 0.92401 0.92628 0.96301 0.93568 0.92925 0.93131 0.94661 0.76858 0.88789 0.87796 0.88972 0.89674 0.90451 0.91230 0.75302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.58 37.16 0.32 -1.62 16 2 C -0.09 -1.41 0.83 -152.24 -0.13 -1.54 16 3 C -0.13 -1.51 8.22 37.16 0.31 -1.20 16 4 C 0.15 2.84 6.15 -2.41 -0.01 2.83 16 5 N -0.61 -15.28 3.31 -169.93 -0.56 -15.85 16 6 C -0.32 -9.46 10.56 -15.06 -0.16 -9.62 16 7 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 8 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 9 N -0.93 -30.44 13.70 55.49 0.76 -29.68 16 10 Si 1.07 30.45 24.53 -169.99 -4.17 26.28 16 11 H -0.30 -8.80 7.11 56.52 0.40 -8.40 16 12 H -0.30 -8.54 6.84 56.52 0.39 -8.15 16 13 H -0.28 -7.89 5.41 56.52 0.31 -7.59 16 14 C 0.10 2.51 4.03 -3.06 -0.01 2.50 16 15 C 0.15 2.67 2.50 -66.10 -0.17 2.50 16 16 H 0.09 1.76 7.61 -51.93 -0.40 1.36 16 17 N -0.72 -11.26 4.56 -52.03 -0.24 -11.50 16 18 C 0.50 8.06 7.60 -10.98 -0.08 7.98 16 19 O -0.51 -10.61 13.41 -16.70 -0.22 -10.83 16 20 C -0.13 -1.33 5.12 -27.88 -0.14 -1.47 16 21 C -0.11 -1.16 2.57 -90.63 -0.23 -1.39 16 22 H 0.11 1.28 8.02 -51.93 -0.42 0.87 16 23 C -0.13 -0.78 6.71 -25.10 -0.17 -0.94 16 24 C 0.10 0.66 7.78 -3.12 -0.02 0.63 16 25 N -0.74 -8.04 6.24 -59.20 -0.37 -8.41 16 26 C 0.51 7.75 7.39 -10.86 -0.08 7.67 16 27 O -0.49 -10.40 15.86 -16.70 -0.26 -10.66 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.25 7.91 -51.93 -0.41 0.84 16 31 H 0.05 0.55 6.38 -51.93 -0.33 0.21 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.02 0.36 7.99 -51.93 -0.41 -0.05 16 35 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 36 H 0.26 8.36 8.73 -40.82 -0.36 8.00 16 37 H 0.05 1.32 6.73 -51.93 -0.35 0.97 16 38 H 0.04 0.96 3.78 -51.93 -0.20 0.76 16 39 H 0.40 5.10 6.90 -40.82 -0.28 4.82 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.33 7.90 -51.93 -0.41 -0.08 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.34 8.14 -51.92 -0.42 -0.09 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.41 4.07 8.96 -40.82 -0.37 3.70 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -40.39 354.83 -7.88 -48.28 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.48 Total: 1.36 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.68 Total: 5.66 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -0.41 Total: -65.44 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.49 Total: -21.49 kcal Atomic # 14 Polarization: 30.45 SS G_CDS: -4.17 Total: 26.28 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -40.39 -7.88 -48.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974667338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.229 kcal (2) G-P(sol) polarization free energy of solvation -40.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds