Wall clock time and date at job start Fri Apr 10 2020 18:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.77884 * 2 1 4 4 C 1.54330 * 110.72179 * 236.76653 * 2 1 3 5 5 N 1.47019 * 107.26866 * 263.82842 * 4 2 1 6 6 C 1.36942 * 125.64770 * 181.02430 * 5 4 2 7 7 H 1.07998 * 119.99702 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99830 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00323 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99670 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46927 * 60.00024 * 10 8 6 12 12 H 1.48500 * 109.47008 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47153 * 299.99999 * 10 8 6 14 14 C 1.47426 * 108.70376 * 1.05523 * 5 4 2 15 15 C 1.54901 * 104.83400 * 335.87327 * 14 5 4 16 16 H 1.09001 * 111.00657 * 155.08109 * 15 14 5 17 17 N 1.46504 * 111.00708 * 278.93498 * 15 14 5 18 18 C 1.34778 * 119.99705 * 267.19986 * 17 15 14 19 19 O 1.21282 * 120.00130 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99682 * 179.97438 * 18 17 15 21 21 H 1.09004 * 109.40168 * 299.99755 * 20 18 17 22 22 C 1.53072 * 109.39999 * 180.16806 * 20 18 17 23 23 C 1.53321 * 108.43355 * 190.88137 * 22 20 18 24 24 C 1.52919 * 108.58703 * 67.66963 * 23 22 20 25 25 N 1.45748 * 110.49227 * 309.21287 * 24 23 22 26 26 C 1.33350 * 124.10684 * 19.04960 * 25 24 23 27 27 O 1.21279 * 118.24817 * 177.80497 * 26 25 24 28 28 H 1.08991 * 109.47275 * 296.75743 * 1 2 3 29 29 H 1.09004 * 109.47268 * 56.75756 * 1 2 3 30 30 H 1.09008 * 109.46766 * 176.75616 * 1 2 3 31 31 H 1.09003 * 109.47456 * 183.23602 * 3 2 1 32 32 H 1.09001 * 109.47438 * 303.24145 * 3 2 1 33 33 H 1.09004 * 109.46958 * 63.24530 * 3 2 1 34 34 H 1.09000 * 109.88165 * 23.24133 * 4 2 1 35 35 H 1.08996 * 109.88261 * 144.40885 * 4 2 1 36 36 H 0.97003 * 119.99947 * 180.02562 * 9 8 6 37 37 H 1.09004 * 110.36498 * 217.03293 * 14 5 4 38 38 H 1.08999 * 110.36381 * 94.71554 * 14 5 4 39 39 H 0.96998 * 119.99780 * 87.18891 * 17 15 14 40 40 H 1.08999 * 109.67411 * 310.70396 * 22 20 18 41 41 H 1.09000 * 109.66918 * 71.23743 * 22 20 18 42 42 H 1.09007 * 109.67857 * 307.92466 * 23 22 20 43 43 H 1.08997 * 109.75277 * 187.46793 * 23 22 20 44 44 H 1.09002 * 109.30222 * 188.89601 * 24 23 22 45 45 H 1.09004 * 109.29890 * 69.52649 * 24 23 22 46 46 H 0.97003 * 117.94996 * 199.07586 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2074 5 7 2.3716 -2.1530 -0.7392 6 6 2.8933 -3.1636 -1.5020 7 1 3.1235 -2.9907 -2.5429 8 6 3.1262 -4.4101 -0.9374 9 7 2.8461 -4.6206 0.3313 10 14 3.8372 -5.7888 -1.9782 11 1 5.1646 -5.3788 -2.5028 12 1 3.9897 -7.0091 -1.1459 13 1 2.9230 -6.0741 -3.1131 14 6 2.0127 -2.2509 0.6874 15 6 2.0790 -0.7955 1.2137 16 1 1.4396 -0.6663 2.0870 17 7 3.4596 -0.4082 1.5144 18 6 3.9479 -0.5673 2.7604 19 8 3.2444 -1.0307 3.6329 20 6 5.3682 -0.1694 3.0696 21 1 6.0499 -0.7448 2.4432 22 6 5.6672 -0.4560 4.5432 23 6 7.0057 0.1998 4.9027 24 6 6.8341 1.7184 4.8502 25 7 6.2256 2.1198 3.5881 26 6 5.5484 1.2949 2.7888 27 8 5.0511 1.7515 1.7813 28 1 -0.3633 0.4626 0.9175 29 1 -0.3634 0.5634 -0.8595 30 1 -0.3633 -1.0261 -0.0582 31 1 3.1610 1.4063 -0.0580 32 1 1.6750 1.9701 -0.8595 33 1 1.7691 1.9343 0.9177 34 1 1.3263 -0.8254 -1.9978 35 1 2.9868 -0.3205 -1.5776 36 1 3.0092 -5.4916 0.7259 37 1 2.7295 -2.8788 1.2167 38 1 1.0040 -2.6488 0.7983 39 1 4.0221 -0.0374 0.8166 40 1 4.8748 -0.0408 5.1659 41 1 5.7332 -1.5324 4.7016 42 1 7.7686 -0.1070 4.1871 43 1 7.3048 -0.1001 5.9070 44 1 7.8097 2.1948 4.9474 45 1 6.1970 2.0377 5.6750 46 1 6.3194 3.0450 3.3121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974684718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:16 Heat of formation + Delta-G solvation = -52.592492 kcal Electronic energy + Delta-G solvation = -27604.280415 eV Core-core repulsion = 23915.142953 eV Total energy + Delta-G solvation = -3689.137462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84007 -39.16449 -37.70545 -36.58336 -33.70229 -33.14054 -32.75712 -30.61049 -30.08036 -27.98727 -26.69500 -25.52691 -25.00365 -23.15788 -22.85250 -20.87030 -19.81194 -19.20233 -18.47608 -17.49283 -16.92632 -16.59786 -16.45373 -15.60337 -15.15075 -14.66295 -14.41965 -14.27916 -13.91452 -13.70188 -13.68435 -13.59765 -13.16082 -12.99385 -12.59221 -12.10876 -11.93927 -11.80100 -11.72739 -11.50505 -11.46203 -11.16783 -11.11417 -11.01503 -10.90415 -10.70463 -10.27772 -10.14725 -9.87645 -9.80956 -9.71225 -9.60330 -9.35529 -9.26472 -8.61786 -8.18035 -6.73919 -5.57255 -2.99781 2.44995 2.88963 3.30915 3.43308 3.47620 3.49167 3.74599 4.42035 4.49564 4.53824 4.60184 4.63068 5.08794 5.14568 5.16536 5.24982 5.39984 5.42594 5.46438 5.54781 5.61734 5.66787 5.74214 5.90412 5.97252 6.07097 6.12995 6.21233 6.24030 6.33655 6.51411 6.52650 6.58108 6.63216 6.76007 6.82262 6.93382 7.08165 7.14395 7.57535 7.68504 7.94433 8.03896 8.20777 8.45002 8.80713 9.28376 9.89854 10.55213 11.45364 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.004962 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.672340 B = 5641.623812 C = 6790.142906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 C -0.128 4.128 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.222 4.222 7 H 0.076 0.924 8 C -0.010 4.010 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.147 3.853 15 C 0.122 3.878 16 H 0.085 0.915 17 N -0.681 5.681 18 C 0.529 3.471 19 O -0.545 6.545 20 C -0.128 4.128 21 H 0.129 0.871 22 C -0.104 4.104 23 C -0.138 4.138 24 C 0.109 3.891 25 N -0.718 5.718 26 C 0.531 3.469 27 O -0.539 6.539 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.112 0.888 38 H 0.020 0.980 39 H 0.406 0.594 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.470 14.134 9.210 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.350 4.350 7 H 0.093 0.907 8 C -0.206 4.206 9 N -0.568 5.568 10 Si 0.743 3.257 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.022 3.978 15 C 0.017 3.983 16 H 0.103 0.897 17 N -0.330 5.330 18 C 0.312 3.688 19 O -0.424 6.424 20 C -0.152 4.152 21 H 0.147 0.853 22 C -0.142 4.142 23 C -0.176 4.176 24 C -0.016 4.016 25 N -0.371 5.371 26 C 0.316 3.684 27 O -0.416 6.416 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.129 0.871 38 H 0.038 0.962 39 H 0.243 0.757 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 6.729 13.566 9.366 17.805 hybrid contribution 0.771 -0.273 -0.990 1.284 sum 7.500 13.293 8.376 17.410 Atomic orbital electron populations 1.21683 0.93784 1.02279 1.00758 1.21842 0.95751 0.94923 0.96332 1.21691 1.01403 0.94842 1.00644 1.21417 0.96472 0.86680 0.93730 1.44466 1.74193 1.06690 1.07386 1.19008 1.33940 0.89251 0.92848 0.90650 1.24771 1.01896 0.97560 0.96342 1.69805 1.53871 1.22278 1.10799 0.86196 0.78868 0.81660 0.79004 1.21314 1.21653 1.21297 1.22297 0.99975 0.90485 0.85084 1.22533 0.81568 0.97964 0.96269 0.89672 1.45777 1.14504 1.62166 1.10600 1.19537 0.87281 0.78809 0.83132 1.90680 1.59203 1.45814 1.46670 1.21487 0.98611 0.94023 1.01065 0.85314 1.21486 0.96956 1.02882 0.92871 1.21930 0.98348 0.93810 1.03535 1.21425 0.98140 0.96396 0.85592 1.45364 1.55628 1.13432 1.22698 1.19689 0.77489 0.88277 0.82907 1.90757 1.47653 1.76399 1.26819 0.93196 0.92807 0.91868 0.91868 0.93287 0.93236 0.95928 0.95978 0.93738 0.87072 0.96224 0.75720 0.89966 0.89604 0.90762 0.89304 0.90528 0.91513 0.76418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.41 37.16 0.31 -1.80 16 2 C -0.09 -1.61 0.80 -152.67 -0.12 -1.74 16 3 C -0.13 -2.08 8.07 37.16 0.30 -1.78 16 4 C 0.14 3.07 6.41 -3.06 -0.02 3.05 16 5 N -0.60 -15.56 3.39 -170.08 -0.58 -16.14 16 6 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -27.39 10.09 55.49 0.56 -26.83 16 10 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 C 0.15 3.73 5.27 -2.53 -0.01 3.72 16 15 C 0.12 2.55 2.67 -65.78 -0.18 2.37 16 16 H 0.09 1.81 7.44 -51.93 -0.39 1.42 16 17 N -0.68 -13.31 4.03 -51.73 -0.21 -13.52 16 18 C 0.53 9.96 7.06 -10.98 -0.08 9.88 16 19 O -0.55 -11.77 15.43 5.56 0.09 -11.69 16 20 C -0.13 -1.79 2.78 -93.14 -0.26 -2.05 16 21 H 0.13 1.71 8.14 -51.93 -0.42 1.28 16 22 C -0.10 -1.17 4.77 -26.53 -0.13 -1.30 16 23 C -0.14 -1.00 6.02 -26.61 -0.16 -1.16 16 24 C 0.11 0.70 7.16 -4.49 -0.03 0.67 16 25 N -0.72 -6.72 5.45 -61.39 -0.33 -7.06 16 26 C 0.53 7.07 7.28 -11.87 -0.09 6.99 16 27 O -0.54 -8.81 15.30 5.56 0.09 -8.73 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.15 7.57 -51.92 -0.39 0.76 16 31 H 0.06 1.08 6.23 -51.93 -0.32 0.76 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.02 0.49 7.84 -51.93 -0.41 0.08 16 35 H 0.02 0.48 7.76 -51.93 -0.40 0.07 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 37 H 0.11 3.23 5.87 -51.93 -0.31 2.92 16 38 H 0.02 0.54 7.80 -51.93 -0.41 0.13 16 39 H 0.41 7.85 5.83 -40.82 -0.24 7.61 16 40 H 0.08 1.01 7.72 -51.93 -0.40 0.61 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.40 3.21 8.80 -40.82 -0.36 2.85 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -33.77 357.46 -8.13 -41.90 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.39 Total: 9.25 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -0.71 Total: 10.06 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.56 Total: -63.55 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.17 Total: -20.41 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.77 -8.13 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974684718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.695 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds