Wall clock time and date at job start Fri Apr 10 2020 18:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.77884 * 2 1 4 4 C 1.54330 * 110.72179 * 236.76653 * 2 1 3 5 5 N 1.47019 * 107.26866 * 263.82842 * 4 2 1 6 6 C 1.36942 * 125.64770 * 181.02430 * 5 4 2 7 7 H 1.07998 * 119.99702 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99830 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00323 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99670 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46927 * 60.00024 * 10 8 6 12 12 H 1.48500 * 109.47008 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47153 * 299.99999 * 10 8 6 14 14 C 1.47426 * 108.70376 * 1.05523 * 5 4 2 15 15 C 1.54901 * 104.83400 * 335.87327 * 14 5 4 16 16 H 1.09001 * 111.00657 * 155.08109 * 15 14 5 17 17 N 1.46504 * 111.00708 * 278.93498 * 15 14 5 18 18 C 1.34778 * 119.99705 * 267.19986 * 17 15 14 19 19 O 1.21282 * 120.00130 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99682 * 179.97438 * 18 17 15 21 21 H 1.09004 * 109.40168 * 299.99755 * 20 18 17 22 22 C 1.53072 * 109.39999 * 180.16806 * 20 18 17 23 23 C 1.53321 * 108.43355 * 190.88137 * 22 20 18 24 24 C 1.52919 * 108.58703 * 67.66963 * 23 22 20 25 25 N 1.45748 * 110.49227 * 309.21287 * 24 23 22 26 26 C 1.33350 * 124.10684 * 19.04960 * 25 24 23 27 27 O 1.21279 * 118.24817 * 177.80497 * 26 25 24 28 28 H 1.08991 * 109.47275 * 296.75743 * 1 2 3 29 29 H 1.09004 * 109.47268 * 56.75756 * 1 2 3 30 30 H 1.09008 * 109.46766 * 176.75616 * 1 2 3 31 31 H 1.09003 * 109.47456 * 183.23602 * 3 2 1 32 32 H 1.09001 * 109.47438 * 303.24145 * 3 2 1 33 33 H 1.09004 * 109.46958 * 63.24530 * 3 2 1 34 34 H 1.09000 * 109.88165 * 23.24133 * 4 2 1 35 35 H 1.08996 * 109.88261 * 144.40885 * 4 2 1 36 36 H 0.97003 * 119.99947 * 180.02562 * 9 8 6 37 37 H 1.09004 * 110.36498 * 217.03293 * 14 5 4 38 38 H 1.08999 * 110.36381 * 94.71554 * 14 5 4 39 39 H 0.96998 * 119.99780 * 87.18891 * 17 15 14 40 40 H 1.08999 * 109.67411 * 310.70396 * 22 20 18 41 41 H 1.09000 * 109.66918 * 71.23743 * 22 20 18 42 42 H 1.09007 * 109.67857 * 307.92466 * 23 22 20 43 43 H 1.08997 * 109.75277 * 187.46793 * 23 22 20 44 44 H 1.09002 * 109.30222 * 188.89601 * 24 23 22 45 45 H 1.09004 * 109.29890 * 69.52649 * 24 23 22 46 46 H 0.97003 * 117.94996 * 199.07586 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2074 5 7 2.3716 -2.1530 -0.7392 6 6 2.8933 -3.1636 -1.5020 7 1 3.1235 -2.9907 -2.5429 8 6 3.1262 -4.4101 -0.9374 9 7 2.8461 -4.6206 0.3313 10 14 3.8372 -5.7888 -1.9782 11 1 5.1646 -5.3788 -2.5028 12 1 3.9897 -7.0091 -1.1459 13 1 2.9230 -6.0741 -3.1131 14 6 2.0127 -2.2509 0.6874 15 6 2.0790 -0.7955 1.2137 16 1 1.4396 -0.6663 2.0870 17 7 3.4596 -0.4082 1.5144 18 6 3.9479 -0.5673 2.7604 19 8 3.2444 -1.0307 3.6329 20 6 5.3682 -0.1694 3.0696 21 1 6.0499 -0.7448 2.4432 22 6 5.6672 -0.4560 4.5432 23 6 7.0057 0.1998 4.9027 24 6 6.8341 1.7184 4.8502 25 7 6.2256 2.1198 3.5881 26 6 5.5484 1.2949 2.7888 27 8 5.0511 1.7515 1.7813 28 1 -0.3633 0.4626 0.9175 29 1 -0.3634 0.5634 -0.8595 30 1 -0.3633 -1.0261 -0.0582 31 1 3.1610 1.4063 -0.0580 32 1 1.6750 1.9701 -0.8595 33 1 1.7691 1.9343 0.9177 34 1 1.3263 -0.8254 -1.9978 35 1 2.9868 -0.3205 -1.5776 36 1 3.0092 -5.4916 0.7259 37 1 2.7295 -2.8788 1.2167 38 1 1.0040 -2.6488 0.7983 39 1 4.0221 -0.0374 0.8166 40 1 4.8748 -0.0408 5.1659 41 1 5.7332 -1.5324 4.7016 42 1 7.7686 -0.1070 4.1871 43 1 7.3048 -0.1001 5.9070 44 1 7.8097 2.1948 4.9474 45 1 6.1970 2.0377 5.6750 46 1 6.3194 3.0450 3.3121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974684718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:14 Heat of formation + Delta-G solvation = -77.204402 kcal Electronic energy + Delta-G solvation = -27605.347667 eV Core-core repulsion = 23915.142953 eV Total energy + Delta-G solvation = -3690.204714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.00200 -40.64562 -39.26705 -37.48525 -35.64554 -34.50470 -33.96086 -32.60787 -31.03741 -29.70397 -28.05696 -27.42750 -26.09301 -24.82494 -23.76029 -22.49281 -21.48295 -20.39244 -19.86237 -18.70643 -18.52309 -18.09314 -17.63180 -17.16017 -16.56532 -16.05113 -15.79830 -15.57686 -15.30784 -15.17031 -15.08737 -14.70971 -14.53438 -14.31105 -14.06643 -13.72340 -13.67215 -13.08153 -13.02505 -12.95166 -12.82161 -12.63409 -12.56439 -12.39557 -12.23656 -12.12740 -11.94288 -11.79274 -11.76610 -11.46014 -11.37917 -11.00686 -10.80810 -10.70638 -10.04474 -9.89066 -8.84956 -7.74743 -5.20487 1.34102 1.44915 1.48455 1.55016 1.62199 2.22805 2.43143 2.49569 3.33993 3.47233 3.53244 3.57561 3.67778 3.77379 3.86417 3.97348 4.07440 4.19762 4.24331 4.41224 4.51632 4.52743 4.71045 4.77031 4.81008 4.85340 4.86676 4.89645 5.01989 5.06885 5.08385 5.11593 5.19075 5.29856 5.30321 5.33529 5.48058 5.53013 5.69669 5.82663 5.84121 6.21459 6.30281 6.62456 7.09734 7.12623 7.27907 7.78479 8.43464 9.25898 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.004962 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.672340 B = 5641.623812 C = 6790.142906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 C -0.116 4.116 4 C 0.140 3.860 5 N -0.617 5.617 6 C -0.237 4.237 7 H 0.082 0.918 8 C -0.066 4.066 9 N -0.949 5.949 10 Si 0.980 3.020 11 H -0.276 1.276 12 H -0.296 1.296 13 H -0.278 1.278 14 C 0.158 3.842 15 C 0.132 3.868 16 H 0.079 0.921 17 N -0.681 5.681 18 C 0.519 3.481 19 O -0.580 6.580 20 C -0.124 4.124 21 H 0.134 0.866 22 C -0.102 4.102 23 C -0.131 4.131 24 C 0.103 3.897 25 N -0.702 5.702 26 C 0.530 3.470 27 O -0.575 6.575 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.244 0.756 37 H 0.071 0.929 38 H -0.011 1.011 39 H 0.408 0.592 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.079 0.921 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.092 16.320 9.249 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 C -0.174 4.174 4 C 0.015 3.985 5 N -0.343 5.343 6 C -0.366 4.366 7 H 0.100 0.900 8 C -0.259 4.259 9 N -0.599 5.599 10 Si 0.808 3.192 11 H -0.201 1.201 12 H -0.222 1.222 13 H -0.205 1.205 14 C 0.032 3.968 15 C 0.025 3.975 16 H 0.097 0.903 17 N -0.330 5.330 18 C 0.304 3.696 19 O -0.461 6.461 20 C -0.148 4.148 21 H 0.152 0.848 22 C -0.140 4.140 23 C -0.168 4.168 24 C -0.020 4.020 25 N -0.354 5.354 26 C 0.315 3.685 27 O -0.456 6.456 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.007 0.993 39 H 0.245 0.755 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.098 0.902 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.388 15.810 9.415 20.223 hybrid contribution 0.262 -0.956 -0.961 1.381 sum 8.649 14.854 8.453 19.155 Atomic orbital electron populations 1.21672 0.92149 1.01396 1.02915 1.21833 0.96990 0.95641 0.93209 1.21588 1.00717 0.93003 1.02085 1.21594 0.96857 0.84944 0.95079 1.44679 1.74054 1.08057 1.07521 1.19422 1.33607 0.90131 0.93447 0.89969 1.25628 1.02718 1.00018 0.97490 1.70102 1.55110 1.22166 1.12484 0.85128 0.78472 0.78213 0.77353 1.20144 1.22217 1.20463 1.21937 0.96891 0.92815 0.85189 1.22236 0.82756 0.95615 0.96878 0.90330 1.45793 1.13979 1.62059 1.11163 1.20428 0.89088 0.77693 0.82344 1.90649 1.60759 1.47171 1.47482 1.21486 0.95013 0.95251 1.03064 0.84840 1.21507 0.99208 1.02681 0.90628 1.21948 0.95597 0.94047 1.05210 1.21747 1.00058 0.95986 0.84221 1.45323 1.53928 1.13312 1.22812 1.19487 0.77988 0.87966 0.83072 1.90735 1.49558 1.76772 1.28492 0.91438 0.90182 0.94341 0.92835 0.90753 0.92631 0.95395 0.95475 0.94598 0.91057 0.99335 0.75466 0.91205 0.90742 0.90146 0.86591 0.86845 0.90249 0.75260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 8.41 71.98 0.61 -3.36 16 2 C -0.08 -2.75 0.80 -50.99 -0.04 -2.79 16 3 C -0.12 -3.55 8.07 71.98 0.58 -2.97 16 4 C 0.14 6.00 6.41 86.73 0.56 6.56 16 5 N -0.62 -32.86 3.39 -692.00 -2.35 -35.21 16 6 C -0.24 -13.63 10.27 84.03 0.86 -12.76 16 7 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 8 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 9 N -0.95 -59.09 10.09 21.65 0.22 -58.87 16 10 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 C 0.16 8.46 5.27 86.85 0.46 8.91 16 15 C 0.13 5.67 2.67 46.38 0.12 5.79 16 16 H 0.08 3.48 7.44 -2.39 -0.02 3.46 16 17 N -0.68 -27.41 4.03 -435.96 -1.76 -29.17 16 18 C 0.52 20.23 7.06 87.66 0.62 20.85 16 19 O -0.58 -26.24 15.43 -3.04 -0.05 -26.29 16 20 C -0.12 -3.50 2.78 -12.42 -0.03 -3.53 16 21 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 22 C -0.10 -2.24 4.77 30.73 0.15 -2.10 16 23 C -0.13 -1.50 6.02 30.67 0.18 -1.32 16 24 C 0.10 0.93 7.16 86.49 0.62 1.55 16 25 N -0.70 -11.32 5.45 -467.32 -2.55 -13.87 16 26 C 0.53 13.57 7.28 87.72 0.64 14.21 16 27 O -0.58 -18.45 15.30 -3.02 -0.05 -18.49 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.04 1.41 7.57 -2.38 -0.02 1.39 16 31 H 0.05 1.76 6.23 -2.39 -0.01 1.74 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.03 1.18 7.84 -2.39 -0.02 1.16 16 35 H 0.03 1.14 7.76 -2.39 -0.02 1.13 16 36 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.07 4.42 5.87 -2.38 -0.01 4.40 16 38 H -0.01 -0.65 7.80 -2.39 -0.02 -0.67 16 39 H 0.41 16.08 5.83 -92.71 -0.54 15.54 16 40 H 0.07 1.71 7.72 -2.39 -0.02 1.69 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 0.88 8.12 -2.38 -0.02 0.86 16 43 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.41 5.42 8.80 -92.71 -0.82 4.60 16 Total: -1.00 -77.44 357.46 0.92 -76.52 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.36 Total: 30.86 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 5.79 Total: 25.65 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -6.43 Total: -137.12 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -0.09 Total: -44.78 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -77.44 0.92 -76.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974684718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.689 kcal (2) G-P(sol) polarization free energy of solvation -77.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds