Wall clock time and date at job start Fri Apr 10 2020 18:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.91766 * 2 1 4 4 C 1.54903 * 111.00575 * 123.90365 * 2 1 3 5 5 N 1.47419 * 104.83704 * 81.06228 * 4 2 1 6 6 C 1.36936 * 125.65315 * 204.17315 * 5 4 2 7 7 H 1.08003 * 119.99609 * 354.86513 * 6 5 4 8 8 C 1.38809 * 120.00139 * 174.87682 * 6 5 4 9 9 N 1.31620 * 120.00245 * 7.07121 * 8 6 5 10 10 Si 1.86804 * 119.99872 * 187.07024 * 8 6 5 11 11 H 1.48495 * 109.46955 * 94.98548 * 10 8 6 12 12 H 1.48503 * 109.46745 * 214.98676 * 10 8 6 13 13 H 1.48498 * 109.46999 * 334.98274 * 10 8 6 14 14 C 1.47026 * 108.69996 * 24.12919 * 5 4 2 15 15 C 1.54320 * 107.40273 * 358.86516 * 14 5 4 16 16 H 1.08999 * 110.72187 * 219.52382 * 15 14 5 17 17 N 1.46498 * 110.72276 * 96.24492 * 15 14 5 18 18 C 1.34775 * 119.99880 * 86.45286 * 17 15 14 19 19 O 1.21288 * 120.00071 * 0.02562 * 18 17 15 20 20 C 1.50700 * 120.00105 * 180.02562 * 18 17 15 21 21 H 1.09000 * 109.40021 * 300.17049 * 20 18 17 22 22 C 1.53069 * 109.40289 * 180.43050 * 20 18 17 23 23 C 1.53347 * 108.41746 * 190.95795 * 22 20 18 24 24 C 1.52915 * 108.68671 * 67.52446 * 23 22 20 25 25 N 1.45751 * 110.49379 * 309.26766 * 24 23 22 26 26 C 1.33354 * 124.10502 * 19.05094 * 25 24 23 27 27 O 1.21279 * 118.24833 * 177.80113 * 26 25 24 28 28 H 1.09003 * 109.47098 * 297.55680 * 1 2 3 29 29 H 1.09002 * 109.47050 * 57.54906 * 1 2 3 30 30 H 1.08990 * 109.47105 * 177.55109 * 1 2 3 31 31 H 1.09005 * 109.47004 * 182.44969 * 3 2 1 32 32 H 1.09005 * 109.47345 * 302.44800 * 3 2 1 33 33 H 1.08998 * 109.47511 * 62.44374 * 3 2 1 34 34 H 1.09004 * 110.36295 * 322.22419 * 4 2 1 35 35 H 1.09003 * 110.36814 * 199.90585 * 4 2 1 36 36 H 0.96994 * 119.99994 * 180.02562 * 9 8 6 37 37 H 1.08994 * 109.88217 * 118.35969 * 14 5 4 38 38 H 1.09004 * 109.88242 * 239.36876 * 14 5 4 39 39 H 0.97004 * 120.00487 * 266.46186 * 17 15 14 40 40 H 1.09006 * 109.67143 * 310.70243 * 22 20 18 41 41 H 1.08997 * 109.67648 * 71.23388 * 22 20 18 42 42 H 1.09000 * 109.57984 * 307.77544 * 23 22 20 43 43 H 1.08995 * 109.61109 * 187.30068 * 23 22 20 44 44 H 1.09003 * 109.30171 * 188.94962 * 24 23 22 45 45 H 1.09000 * 109.13157 * 69.47431 * 24 23 22 46 46 H 0.96995 * 117.95171 * 199.07255 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4292 0.0000 4 6 2.0853 -0.8066 1.2002 5 7 2.0139 -2.2159 0.7734 6 6 1.9445 -3.2999 1.6072 7 1 2.0224 -3.1649 2.6759 8 6 1.7744 -4.5722 1.0788 9 7 1.8191 -4.7552 -0.2238 10 14 1.4820 -6.0246 2.2166 11 1 0.0226 -6.2673 2.3443 12 1 2.1376 -7.2329 1.6552 13 1 2.0534 -5.7279 3.5548 14 6 2.0285 -2.2646 -0.6960 15 6 2.0842 -0.8090 -1.2056 16 1 1.4490 -0.6828 -2.0824 17 7 3.4639 -0.4161 -1.5024 18 6 3.9938 -0.6791 -2.7134 19 8 3.3282 -1.2407 -3.5576 20 6 5.4133 -0.2755 -3.0185 21 1 5.5132 0.8048 -2.9129 22 6 5.7591 -0.6783 -4.4542 23 6 7.2706 -0.5134 -4.6530 24 6 7.9939 -1.5503 -3.7927 25 7 7.5049 -1.5054 -2.4204 26 6 6.3438 -0.9588 -2.0579 27 8 6.0222 -1.0163 -0.8899 28 1 -0.3633 0.4754 0.9111 29 1 -0.3633 0.5514 -0.8672 30 1 -0.3633 -1.0266 -0.0439 31 1 3.1651 1.4020 -0.0439 32 1 1.6909 1.9655 -0.8672 33 1 1.7619 1.9383 0.9110 34 1 1.4672 -0.6461 2.0836 35 1 3.1182 -0.5233 1.4024 36 1 1.6998 -5.6442 -0.5930 37 1 2.9062 -2.8116 -1.0401 38 1 1.1231 -2.7504 -1.0598 39 1 3.9962 0.0333 -0.8273 40 1 5.4780 -1.7181 -4.6214 41 1 5.2248 -0.0361 -5.1543 42 1 7.5719 0.4889 -4.3483 43 1 7.5209 -0.6698 -5.7022 44 1 9.0639 -1.3421 -3.8009 45 1 7.8170 -2.5433 -4.2059 46 1 8.0588 -1.8974 -1.7274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974684723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:22 Heat of formation + Delta-G solvation = -50.042490 kcal Electronic energy + Delta-G solvation = -27601.452536 eV Core-core repulsion = 23912.425650 eV Total energy + Delta-G solvation = -3689.026885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.81357 -39.18319 -37.71037 -36.52017 -33.72686 -33.12903 -32.74180 -30.59222 -30.06142 -27.94396 -26.74927 -25.52416 -25.01481 -23.17965 -22.82772 -20.84704 -19.85291 -19.21932 -18.50425 -17.44634 -16.92118 -16.53756 -16.37566 -15.67222 -15.10010 -14.64706 -14.40837 -14.22306 -13.92639 -13.76351 -13.74602 -13.51530 -13.33117 -13.02219 -12.40247 -12.10098 -11.91432 -11.89091 -11.65491 -11.49981 -11.47500 -11.25006 -11.15412 -10.96415 -10.89328 -10.70348 -10.27259 -10.12283 -9.90273 -9.78064 -9.74652 -9.54899 -9.39957 -9.15234 -8.48437 -8.26737 -6.68070 -5.58118 -2.90613 2.49363 2.92960 3.35610 3.47567 3.52106 3.54694 3.64537 4.41278 4.50580 4.58317 4.60531 4.62275 5.04741 5.10131 5.12437 5.18144 5.37582 5.40104 5.41611 5.53924 5.62804 5.64819 5.75867 5.79988 5.92467 6.00026 6.11476 6.13886 6.24897 6.30154 6.35234 6.50375 6.68627 6.69560 6.76177 6.79891 6.90253 7.09123 7.19817 7.69238 7.77197 7.96150 8.07962 8.19275 8.38829 8.71488 9.34234 9.95519 10.62479 11.53094 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.005054 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.961556 B = 5538.685583 C = 6704.689828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.144 3.856 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.293 1.293 13 H -0.282 1.282 14 C 0.178 3.822 15 C 0.123 3.877 16 H 0.086 0.914 17 N -0.691 5.691 18 C 0.526 3.474 19 O -0.539 6.539 20 C -0.126 4.126 21 H 0.124 0.876 22 C -0.105 4.105 23 C -0.137 4.137 24 C 0.108 3.892 25 N -0.719 5.719 26 C 0.525 3.475 27 O -0.528 6.528 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.018 0.982 36 H 0.251 0.749 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.403 0.597 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.715 13.647 -8.846 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.018 3.982 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.052 3.948 15 C 0.018 3.982 16 H 0.104 0.896 17 N -0.342 5.342 18 C 0.309 3.691 19 O -0.416 6.416 20 C -0.150 4.150 21 H 0.142 0.858 22 C -0.143 4.143 23 C -0.174 4.174 24 C -0.016 4.016 25 N -0.372 5.372 26 C 0.310 3.690 27 O -0.404 6.404 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.241 0.759 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 9.893 13.071 -9.006 18.703 hybrid contribution 0.549 -0.872 1.076 1.490 sum 10.442 12.199 -7.930 17.909 Atomic orbital electron populations 1.21587 0.93353 1.02804 1.00452 1.22041 0.96229 0.94092 0.96717 1.21686 1.00359 0.95632 1.01258 1.21624 0.96683 0.85771 0.94110 1.44393 1.86804 0.99669 1.01809 1.19027 1.42534 0.84699 0.89057 0.90559 1.24805 1.02358 0.97354 0.95898 1.69996 1.56005 1.21026 1.09457 0.86153 0.77776 0.82547 0.79658 1.21718 1.21946 1.20741 1.21470 1.01331 0.88544 0.83409 1.22514 0.81143 0.97736 0.96801 0.89627 1.46045 1.14828 1.59379 1.13992 1.19630 0.87162 0.79503 0.82816 1.90707 1.61781 1.41873 1.47251 1.21465 0.93676 1.02876 0.96972 0.85817 1.21510 0.95001 1.04429 0.93383 1.21919 0.95458 0.99359 1.00711 1.21418 0.98426 1.00071 0.81734 1.45332 1.21175 1.60394 1.10288 1.19610 0.81621 0.78750 0.88988 1.90849 1.72772 1.58090 1.18713 0.92864 0.93472 0.91277 0.92991 0.92915 0.92634 0.94213 0.96483 0.93885 0.93697 0.92945 0.75898 0.89680 0.89899 0.90940 0.89350 0.90494 0.91430 0.76200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 8.60 37.16 0.32 -1.78 16 2 C -0.09 -1.61 0.83 -152.23 -0.13 -1.73 16 3 C -0.13 -1.86 8.35 37.16 0.31 -1.55 16 4 C 0.14 3.13 6.15 -2.54 -0.02 3.12 16 5 N -0.60 -16.08 3.38 -170.08 -0.58 -16.66 16 6 C -0.22 -6.58 10.27 -15.06 -0.15 -6.73 16 7 H 0.08 2.16 7.84 -52.48 -0.41 1.75 16 8 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 9 N -0.92 -28.64 10.36 55.49 0.57 -28.07 16 10 Si 0.91 23.16 29.56 -169.99 -5.02 18.14 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 14 C 0.18 4.69 4.73 -3.06 -0.01 4.68 16 15 C 0.12 2.54 2.52 -65.96 -0.17 2.37 16 16 H 0.09 1.78 7.61 -51.93 -0.40 1.39 16 17 N -0.69 -12.91 4.04 -51.90 -0.21 -13.12 16 18 C 0.53 9.54 7.05 -10.99 -0.08 9.47 16 19 O -0.54 -11.49 15.52 5.55 0.09 -11.40 16 20 C -0.13 -1.66 2.78 -93.14 -0.26 -1.92 16 21 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 22 C -0.11 -1.13 4.78 -26.52 -0.13 -1.26 16 23 C -0.14 -0.95 6.02 -26.60 -0.16 -1.11 16 24 C 0.11 0.81 7.17 -4.49 -0.03 0.78 16 25 N -0.72 -8.02 5.45 -61.39 -0.33 -8.36 16 26 C 0.53 7.78 7.28 -11.87 -0.09 7.69 16 27 O -0.53 -10.13 15.56 5.56 0.09 -10.04 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.37 7.81 -51.93 -0.41 0.96 16 31 H 0.05 0.72 6.17 -51.93 -0.32 0.40 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.02 0.38 8.04 -51.93 -0.42 -0.03 16 36 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 37 H 0.04 1.38 7.51 -51.93 -0.39 0.99 16 38 H 0.05 1.54 7.29 -51.93 -0.38 1.16 16 39 H 0.40 7.20 5.48 -40.82 -0.22 6.98 16 40 H 0.08 1.12 7.72 -51.93 -0.40 0.72 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.40 4.21 8.80 -40.82 -0.36 3.85 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -36.57 359.24 -8.15 -44.72 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.48 Total: 7.69 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: -0.69 Total: 11.68 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -0.54 Total: -66.20 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.17 Total: -21.45 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.57 -8.15 -44.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974684723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.321 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds