Wall clock time and date at job start Fri Apr 10 2020 18:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.91766 * 2 1 4 4 C 1.54903 * 111.00575 * 123.90365 * 2 1 3 5 5 N 1.47419 * 104.83704 * 81.06228 * 4 2 1 6 6 C 1.36936 * 125.65315 * 204.17315 * 5 4 2 7 7 H 1.08003 * 119.99609 * 354.86513 * 6 5 4 8 8 C 1.38809 * 120.00139 * 174.87682 * 6 5 4 9 9 N 1.31620 * 120.00245 * 7.07121 * 8 6 5 10 10 Si 1.86804 * 119.99872 * 187.07024 * 8 6 5 11 11 H 1.48495 * 109.46955 * 94.98548 * 10 8 6 12 12 H 1.48503 * 109.46745 * 214.98676 * 10 8 6 13 13 H 1.48498 * 109.46999 * 334.98274 * 10 8 6 14 14 C 1.47026 * 108.69996 * 24.12919 * 5 4 2 15 15 C 1.54320 * 107.40273 * 358.86516 * 14 5 4 16 16 H 1.08999 * 110.72187 * 219.52382 * 15 14 5 17 17 N 1.46498 * 110.72276 * 96.24492 * 15 14 5 18 18 C 1.34775 * 119.99880 * 86.45286 * 17 15 14 19 19 O 1.21288 * 120.00071 * 0.02562 * 18 17 15 20 20 C 1.50700 * 120.00105 * 180.02562 * 18 17 15 21 21 H 1.09000 * 109.40021 * 300.17049 * 20 18 17 22 22 C 1.53069 * 109.40289 * 180.43050 * 20 18 17 23 23 C 1.53347 * 108.41746 * 190.95795 * 22 20 18 24 24 C 1.52915 * 108.68671 * 67.52446 * 23 22 20 25 25 N 1.45751 * 110.49379 * 309.26766 * 24 23 22 26 26 C 1.33354 * 124.10502 * 19.05094 * 25 24 23 27 27 O 1.21279 * 118.24833 * 177.80113 * 26 25 24 28 28 H 1.09003 * 109.47098 * 297.55680 * 1 2 3 29 29 H 1.09002 * 109.47050 * 57.54906 * 1 2 3 30 30 H 1.08990 * 109.47105 * 177.55109 * 1 2 3 31 31 H 1.09005 * 109.47004 * 182.44969 * 3 2 1 32 32 H 1.09005 * 109.47345 * 302.44800 * 3 2 1 33 33 H 1.08998 * 109.47511 * 62.44374 * 3 2 1 34 34 H 1.09004 * 110.36295 * 322.22419 * 4 2 1 35 35 H 1.09003 * 110.36814 * 199.90585 * 4 2 1 36 36 H 0.96994 * 119.99994 * 180.02562 * 9 8 6 37 37 H 1.08994 * 109.88217 * 118.35969 * 14 5 4 38 38 H 1.09004 * 109.88242 * 239.36876 * 14 5 4 39 39 H 0.97004 * 120.00487 * 266.46186 * 17 15 14 40 40 H 1.09006 * 109.67143 * 310.70243 * 22 20 18 41 41 H 1.08997 * 109.67648 * 71.23388 * 22 20 18 42 42 H 1.09000 * 109.57984 * 307.77544 * 23 22 20 43 43 H 1.08995 * 109.61109 * 187.30068 * 23 22 20 44 44 H 1.09003 * 109.30171 * 188.94962 * 24 23 22 45 45 H 1.09000 * 109.13157 * 69.47431 * 24 23 22 46 46 H 0.96995 * 117.95171 * 199.07255 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4292 0.0000 4 6 2.0853 -0.8066 1.2002 5 7 2.0139 -2.2159 0.7734 6 6 1.9445 -3.2999 1.6072 7 1 2.0224 -3.1649 2.6759 8 6 1.7744 -4.5722 1.0788 9 7 1.8191 -4.7552 -0.2238 10 14 1.4820 -6.0246 2.2166 11 1 0.0226 -6.2673 2.3443 12 1 2.1376 -7.2329 1.6552 13 1 2.0534 -5.7279 3.5548 14 6 2.0285 -2.2646 -0.6960 15 6 2.0842 -0.8090 -1.2056 16 1 1.4490 -0.6828 -2.0824 17 7 3.4639 -0.4161 -1.5024 18 6 3.9938 -0.6791 -2.7134 19 8 3.3282 -1.2407 -3.5576 20 6 5.4133 -0.2755 -3.0185 21 1 5.5132 0.8048 -2.9129 22 6 5.7591 -0.6783 -4.4542 23 6 7.2706 -0.5134 -4.6530 24 6 7.9939 -1.5503 -3.7927 25 7 7.5049 -1.5054 -2.4204 26 6 6.3438 -0.9588 -2.0579 27 8 6.0222 -1.0163 -0.8899 28 1 -0.3633 0.4754 0.9111 29 1 -0.3633 0.5514 -0.8672 30 1 -0.3633 -1.0266 -0.0439 31 1 3.1651 1.4020 -0.0439 32 1 1.6909 1.9655 -0.8672 33 1 1.7619 1.9383 0.9110 34 1 1.4672 -0.6461 2.0836 35 1 3.1182 -0.5233 1.4024 36 1 1.6998 -5.6442 -0.5930 37 1 2.9062 -2.8116 -1.0401 38 1 1.1231 -2.7504 -1.0598 39 1 3.9962 0.0333 -0.8273 40 1 5.4780 -1.7181 -4.6214 41 1 5.2248 -0.0361 -5.1543 42 1 7.5719 0.4889 -4.3483 43 1 7.5209 -0.6698 -5.7022 44 1 9.0639 -1.3421 -3.8009 45 1 7.8170 -2.5433 -4.2059 46 1 8.0588 -1.8974 -1.7274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974684723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:20 Heat of formation + Delta-G solvation = -78.353853 kcal Electronic energy + Delta-G solvation = -27602.680208 eV Core-core repulsion = 23912.425650 eV Total energy + Delta-G solvation = -3690.254558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.02945 -40.67215 -39.28249 -37.52069 -35.69100 -34.49562 -33.97183 -32.63671 -31.06277 -29.68381 -28.07072 -27.45588 -26.13271 -24.87757 -23.77881 -22.49302 -21.54383 -20.44387 -19.84899 -18.71067 -18.57876 -18.10392 -17.50090 -17.24484 -16.67995 -16.16379 -15.71640 -15.61769 -15.39944 -15.24251 -15.04012 -14.77613 -14.61150 -14.31334 -13.93553 -13.76895 -13.44829 -13.15653 -13.00665 -12.99887 -12.87288 -12.72388 -12.59427 -12.39416 -12.25493 -12.12119 -11.93171 -11.88351 -11.75886 -11.51375 -11.32724 -11.01826 -10.83572 -10.71273 -10.08646 -9.93917 -8.90566 -7.86177 -5.21964 1.25439 1.39785 1.43409 1.52168 1.66378 2.26542 2.34728 2.47189 3.30896 3.44724 3.50074 3.51778 3.71587 3.78214 3.86989 3.95803 4.06364 4.18187 4.24007 4.38956 4.52005 4.52705 4.67582 4.76211 4.83518 4.84882 4.86369 4.94186 5.03639 5.05551 5.07964 5.12549 5.16557 5.30294 5.33503 5.35642 5.43120 5.55923 5.68968 5.74928 5.78160 6.15812 6.22067 6.58304 7.05826 7.10470 7.25910 7.75841 8.41638 9.23902 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.005054 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.961556 B = 5538.685583 C = 6704.689828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.139 3.861 5 N -0.619 5.619 6 C -0.239 4.239 7 H 0.085 0.915 8 C -0.071 4.071 9 N -0.954 5.954 10 Si 0.980 3.020 11 H -0.283 1.283 12 H -0.298 1.298 13 H -0.265 1.265 14 C 0.198 3.802 15 C 0.134 3.866 16 H 0.083 0.917 17 N -0.687 5.687 18 C 0.516 3.484 19 O -0.578 6.578 20 C -0.116 4.116 21 H 0.163 0.837 22 C -0.104 4.104 23 C -0.126 4.126 24 C 0.098 3.902 25 N -0.709 5.709 26 C 0.518 3.482 27 O -0.584 6.584 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.017 0.983 36 H 0.243 0.757 37 H -0.013 1.013 38 H 0.008 0.992 39 H 0.409 0.591 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.066 0.934 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.146 16.391 -8.892 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.075 4.075 3 C -0.181 4.181 4 C 0.014 3.986 5 N -0.345 5.345 6 C -0.368 4.368 7 H 0.102 0.898 8 C -0.263 4.263 9 N -0.603 5.603 10 Si 0.808 3.192 11 H -0.210 1.210 12 H -0.225 1.225 13 H -0.189 1.189 14 C 0.072 3.928 15 C 0.027 3.973 16 H 0.101 0.899 17 N -0.339 5.339 18 C 0.301 3.699 19 O -0.458 6.458 20 C -0.140 4.140 21 H 0.180 0.820 22 C -0.142 4.142 23 C -0.163 4.163 24 C -0.025 4.025 25 N -0.360 5.360 26 C 0.303 3.697 27 O -0.465 6.465 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.005 0.995 38 H 0.026 0.974 39 H 0.248 0.752 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.084 0.916 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 11.379 15.858 -9.057 21.517 hybrid contribution 0.162 -1.770 1.064 2.071 sum 11.541 14.088 -7.993 19.888 Atomic orbital electron populations 1.21575 0.92311 1.00989 1.02951 1.22031 0.96971 0.95793 0.92754 1.21653 1.00469 0.92444 1.03527 1.21856 0.97023 0.83585 0.96147 1.44670 1.86454 1.01536 1.01812 1.19494 1.41631 0.85853 0.89860 0.89769 1.25739 1.02719 1.00443 0.97423 1.70280 1.57461 1.20974 1.11575 0.85030 0.77674 0.78351 0.78140 1.21019 1.22513 1.18925 1.21017 0.96481 0.91636 0.83668 1.22171 0.82828 0.94601 0.97651 0.89938 1.45996 1.14048 1.59231 1.14595 1.20568 0.89012 0.78312 0.81971 1.90682 1.63386 1.43371 1.48355 1.21514 0.89534 1.04906 0.98046 0.81973 1.21553 0.98310 1.02610 0.91748 1.21946 0.91886 1.00189 1.02321 1.21798 1.00604 1.00533 0.79555 1.45424 1.19925 1.58445 1.12169 1.19915 0.82526 0.78809 0.88419 1.90820 1.74222 1.60585 1.20872 0.90449 0.90833 0.95266 0.92714 0.90754 0.90237 0.93151 0.96517 0.94762 0.99487 0.97414 0.75160 0.92936 0.88689 0.88835 0.86509 0.86672 0.91594 0.75916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 8.60 71.98 0.62 -3.31 16 2 C -0.07 -2.60 0.83 -50.70 -0.04 -2.64 16 3 C -0.12 -3.08 8.35 71.98 0.60 -2.48 16 4 C 0.14 6.03 6.15 86.85 0.53 6.56 16 5 N -0.62 -34.61 3.38 -692.01 -2.34 -36.95 16 6 C -0.24 -14.49 10.27 84.03 0.86 -13.63 16 7 H 0.08 4.83 7.84 -2.91 -0.02 4.81 16 8 C -0.07 -4.37 5.48 84.86 0.46 -3.91 16 9 N -0.95 -63.38 10.36 21.65 0.22 -63.16 16 10 Si 0.98 49.20 29.56 68.60 2.03 51.23 16 11 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 13 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 14 C 0.20 11.23 4.73 86.73 0.41 11.64 16 15 C 0.13 5.70 2.52 46.27 0.12 5.82 16 16 H 0.08 3.57 7.61 -2.39 -0.02 3.55 16 17 N -0.69 -26.23 4.04 -436.51 -1.76 -27.99 16 18 C 0.52 19.20 7.05 87.66 0.62 19.82 16 19 O -0.58 -25.85 15.52 -3.05 -0.05 -25.90 16 20 C -0.12 -2.97 2.78 -12.42 -0.03 -3.01 16 21 H 0.16 2.84 8.14 -2.39 -0.02 2.83 16 22 C -0.10 -2.09 4.78 30.73 0.15 -1.94 16 23 C -0.13 -1.30 6.02 30.68 0.18 -1.12 16 24 C 0.10 1.19 7.17 86.49 0.62 1.81 16 25 N -0.71 -15.01 5.45 -467.32 -2.55 -17.56 16 26 C 0.52 15.22 7.28 87.72 0.64 15.86 16 27 O -0.58 -23.02 15.56 -3.03 -0.05 -23.07 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.03 1.16 7.81 -2.39 -0.02 1.15 16 31 H 0.05 1.36 6.17 -2.38 -0.01 1.34 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 2.08 8.05 -2.39 -0.02 2.06 16 35 H 0.02 0.75 8.04 -2.39 -0.02 0.73 16 36 H 0.24 15.74 8.31 -92.71 -0.77 14.97 16 37 H -0.01 -0.88 7.51 -2.39 -0.02 -0.90 16 38 H 0.01 0.50 7.29 -2.39 -0.02 0.48 16 39 H 0.41 14.64 5.48 -92.71 -0.51 14.13 16 40 H 0.05 1.40 7.72 -2.38 -0.02 1.38 16 41 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 0.67 8.12 -2.39 -0.02 0.65 16 43 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 46 H 0.40 8.19 8.80 -92.71 -0.82 7.37 16 Total: -1.00 -88.47 359.24 0.91 -87.56 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.34 Total: 26.36 kcal Atomic # 6 Polarization: 23.74 SS G_CDS: 5.74 Total: 29.48 kcal Atomic # 7 Polarization: -139.24 SS G_CDS: -6.42 Total: -145.67 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -0.09 Total: -48.96 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.03 Total: 51.23 kcal Total: -88.47 0.91 -87.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974684723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.207 kcal (2) G-P(sol) polarization free energy of solvation -88.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds