Wall clock time and date at job start Fri Apr 10 2020 18:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.91691 * 2 1 4 4 C 1.54914 * 111.00263 * 123.89858 * 2 1 3 5 5 N 1.47426 * 104.82992 * 81.06932 * 4 2 1 6 6 C 1.36936 * 125.64583 * 204.09666 * 5 4 2 7 7 H 1.08004 * 120.00261 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00145 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99550 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00112 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47084 * 60.00066 * 10 8 6 12 12 H 1.48498 * 109.46831 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47190 * 299.99852 * 10 8 6 14 14 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 15 15 C 1.54325 * 107.40412 * 358.86539 * 14 5 4 16 16 H 1.09002 * 110.72265 * 219.52294 * 15 14 5 17 17 N 1.46501 * 110.72113 * 96.24493 * 15 14 5 18 18 C 1.34773 * 119.99782 * 86.45299 * 17 15 14 19 19 O 1.21280 * 120.00408 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99682 * 179.97438 * 18 17 15 21 21 H 1.09003 * 109.30077 * 319.99908 * 20 18 17 22 22 C 1.52917 * 109.29980 * 79.58720 * 20 18 17 23 23 C 1.53354 * 108.67335 * 171.05878 * 22 20 18 24 24 C 1.53064 * 108.42777 * 292.47063 * 23 22 20 25 25 C 1.50178 * 109.89241 * 48.89936 * 24 23 22 26 26 O 1.21280 * 118.24778 * 162.43806 * 25 24 23 27 27 N 1.33096 * 123.42532 * 342.23539 * 25 24 23 28 28 H 1.08998 * 109.47124 * 297.54972 * 1 2 3 29 29 H 1.09000 * 109.46711 * 57.55324 * 1 2 3 30 30 H 1.08996 * 109.47179 * 177.55223 * 1 2 3 31 31 H 1.08997 * 109.47294 * 182.44461 * 3 2 1 32 32 H 1.08997 * 109.47279 * 302.45141 * 3 2 1 33 33 H 1.09006 * 109.47100 * 62.44935 * 3 2 1 34 34 H 1.08999 * 110.37121 * 322.22667 * 4 2 1 35 35 H 1.09003 * 110.36718 * 199.90572 * 4 2 1 36 36 H 0.97004 * 119.99606 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.88241 * 118.36067 * 14 5 4 38 38 H 1.09000 * 109.88049 * 239.37196 * 14 5 4 39 39 H 0.97002 * 119.99754 * 266.45742 * 17 15 14 40 40 H 1.08997 * 109.60569 * 290.82182 * 22 20 18 41 41 H 1.09007 * 109.60057 * 51.14901 * 22 20 18 42 42 H 1.08999 * 109.66900 * 52.20856 * 23 22 20 43 43 H 1.08996 * 109.66869 * 172.69818 * 23 22 20 44 44 H 1.09000 * 109.40242 * 169.02444 * 24 23 22 45 45 H 1.08998 * 109.40175 * 288.77279 * 24 23 22 46 46 H 0.96997 * 117.74864 * 182.38776 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2004 5 7 2.0139 -2.2159 0.7734 6 6 1.9460 -3.2999 1.6073 7 1 1.9411 -3.1582 2.6780 8 6 1.8833 -4.5810 1.0765 9 7 1.8897 -4.7538 -0.2283 10 14 1.7913 -6.0599 2.2141 11 1 0.5729 -5.9608 3.0570 12 1 1.7344 -7.3038 1.4050 13 1 2.9942 -6.0906 3.0843 14 6 2.0286 -2.2646 -0.6959 15 6 2.0842 -0.8090 -1.2055 16 1 1.4491 -0.6828 -2.0824 17 7 3.4640 -0.4161 -1.5023 18 6 3.9940 -0.6792 -2.7132 19 8 3.3285 -1.2408 -3.5574 20 6 5.4131 -0.2745 -3.0186 21 1 5.6086 0.7073 -2.5872 22 6 6.3727 -1.2957 -2.4065 23 6 7.7908 -1.0002 -2.9101 24 6 7.8426 -1.2957 -4.4111 25 6 6.6825 -0.6380 -5.1017 26 8 6.7381 -0.4921 -6.3044 27 7 5.5956 -0.2107 -4.4633 28 1 -0.3633 0.4753 0.9111 29 1 -0.3633 0.5514 -0.8673 30 1 -0.3633 -1.0267 -0.0439 31 1 3.1650 1.4020 -0.0438 32 1 1.6909 1.9654 -0.8672 33 1 1.7619 1.9383 0.9112 34 1 1.4672 -0.6461 2.0838 35 1 3.1182 -0.5233 1.4026 36 1 1.8463 -5.6490 -0.5992 37 1 2.9064 -2.8117 -1.0399 38 1 1.1232 -2.7504 -1.0597 39 1 3.9961 0.0333 -0.8271 40 1 6.3466 -1.2165 -1.3198 41 1 6.0775 -2.3010 -2.7073 42 1 8.0317 0.0482 -2.7339 43 1 8.5058 -1.6341 -2.3858 44 1 8.7751 -0.9109 -4.8239 45 1 7.7950 -2.3730 -4.5699 46 1 4.8799 0.1706 -4.9955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974717000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:49 Heat of formation + Delta-G solvation = -79.520253 kcal Electronic energy + Delta-G solvation = -27121.743687 eV Core-core repulsion = 23431.438550 eV Total energy + Delta-G solvation = -3690.305137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89355 -40.82587 -39.44577 -37.28575 -35.71300 -34.55042 -33.97078 -32.59077 -31.24029 -29.61918 -28.06058 -27.40216 -26.32545 -24.90717 -23.80260 -22.43703 -21.47274 -20.28988 -20.09724 -18.73218 -18.65522 -18.09601 -17.52197 -16.85540 -16.64529 -16.22343 -15.89811 -15.67429 -15.37205 -15.17515 -14.97019 -14.76843 -14.58787 -14.50260 -13.89637 -13.74353 -13.43621 -13.15416 -13.05799 -12.97788 -12.83827 -12.64931 -12.59621 -12.55091 -12.17829 -12.03361 -11.89643 -11.83505 -11.70883 -11.49331 -11.30009 -11.28907 -10.79281 -10.69759 -10.19558 -9.99638 -8.86956 -7.82442 -5.18509 1.44883 1.47580 1.48348 1.51943 1.54274 1.96949 2.41555 2.50327 3.36145 3.48523 3.53622 3.56655 3.68083 3.75932 3.84257 3.98277 4.05517 4.09419 4.24135 4.41852 4.51321 4.54191 4.70610 4.77200 4.82004 4.87233 4.91695 4.93646 4.99057 5.06535 5.08120 5.15966 5.19918 5.27395 5.31979 5.39004 5.47934 5.58816 5.62512 5.72260 5.77162 6.19267 6.23117 6.55238 7.08880 7.10324 7.24704 7.80429 8.43910 9.26338 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.004385 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.052963 B = 6384.160785 C = 7612.956744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.235 4.235 7 H 0.088 0.912 8 C -0.068 4.068 9 N -0.954 5.954 10 Si 0.974 3.026 11 H -0.277 1.277 12 H -0.302 1.302 13 H -0.273 1.273 14 C 0.194 3.806 15 C 0.138 3.862 16 H 0.073 0.927 17 N -0.689 5.689 18 C 0.496 3.504 19 O -0.582 6.582 20 C 0.136 3.864 21 H 0.147 0.853 22 C -0.132 4.132 23 C -0.107 4.107 24 C -0.135 4.135 25 C 0.518 3.482 26 O -0.609 6.609 27 N -0.698 5.698 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.242 0.758 37 H 0.002 0.998 38 H -0.002 1.002 39 H 0.415 0.585 40 H 0.112 0.888 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.287 16.193 1.485 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.075 4.075 3 C -0.182 4.182 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.364 4.364 7 H 0.105 0.895 8 C -0.260 4.260 9 N -0.604 5.604 10 Si 0.802 3.198 11 H -0.203 1.203 12 H -0.229 1.229 13 H -0.199 1.199 14 C 0.068 3.932 15 C 0.031 3.969 16 H 0.091 0.909 17 N -0.341 5.341 18 C 0.282 3.718 19 O -0.461 6.461 20 C 0.028 3.972 21 H 0.164 0.836 22 C -0.170 4.170 23 C -0.145 4.145 24 C -0.175 4.175 25 C 0.307 3.693 26 O -0.492 6.492 27 N -0.348 5.348 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.021 0.979 38 H 0.016 0.984 39 H 0.254 0.746 40 H 0.131 0.869 41 H 0.068 0.932 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.138 0.862 45 H 0.118 0.882 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.020 15.562 0.448 18.514 hybrid contribution -0.840 -1.550 0.154 1.770 sum 9.181 14.012 0.602 16.762 Atomic orbital electron populations 1.21600 0.93299 1.00718 1.02649 1.22035 0.96405 0.96105 0.93002 1.21671 1.01281 0.92044 1.03208 1.21919 0.98007 0.83092 0.95642 1.44660 1.86614 1.01634 1.01661 1.19437 1.42127 0.85014 0.89806 0.89467 1.25622 1.03028 1.00284 0.97108 1.70229 1.58599 1.20427 1.11110 0.85217 0.78404 0.78535 0.77608 1.20277 1.22911 1.19896 1.21050 0.97007 0.91487 0.83655 1.22085 0.82724 0.94641 0.97412 0.90862 1.45767 1.14153 1.59723 1.14499 1.21414 0.89797 0.78422 0.82182 1.90747 1.63577 1.43166 1.48614 1.21118 0.90782 1.03710 0.81575 0.83608 1.21945 0.95005 0.97147 1.02873 1.21660 0.95204 1.04911 0.92676 1.21760 0.96109 1.02254 0.97346 1.20821 0.84686 0.76789 0.86993 1.90729 1.82338 1.58966 1.17122 1.45292 1.19550 1.62046 1.07866 0.90595 0.91476 0.95533 0.91103 0.91586 0.90464 0.93579 0.94354 0.94908 0.97937 0.98373 0.74638 0.86933 0.93221 0.88188 0.87688 0.86202 0.88193 0.76812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.60 71.98 0.62 -2.98 16 2 C -0.07 -2.10 0.83 -50.70 -0.04 -2.14 16 3 C -0.12 -2.21 8.35 71.98 0.60 -1.61 16 4 C 0.14 4.79 6.15 86.86 0.53 5.32 16 5 N -0.62 -29.83 3.38 -691.97 -2.34 -32.17 16 6 C -0.23 -12.67 10.28 84.03 0.86 -11.81 16 7 H 0.09 4.42 7.83 -2.91 -0.02 4.39 16 8 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 9 N -0.95 -58.98 10.31 21.65 0.22 -58.76 16 10 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 14 C 0.19 9.60 4.72 86.73 0.41 10.01 16 15 C 0.14 4.87 2.52 46.27 0.12 4.99 16 16 H 0.07 2.83 7.61 -2.39 -0.02 2.82 16 17 N -0.69 -18.84 4.55 -436.50 -1.99 -20.82 16 18 C 0.50 14.77 6.98 87.66 0.61 15.38 16 19 O -0.58 -24.10 16.12 -3.03 -0.05 -24.15 16 20 C 0.14 2.69 3.46 44.36 0.15 2.84 16 21 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 22 C -0.13 -2.35 5.29 30.69 0.16 -2.19 16 23 C -0.11 -1.25 6.03 30.73 0.19 -1.06 16 24 C -0.14 -2.33 6.03 29.71 0.18 -2.15 16 25 C 0.52 13.68 7.71 87.75 0.68 14.36 16 26 O -0.61 -21.58 17.78 -3.03 -0.05 -21.64 16 27 N -0.70 -17.13 4.77 -450.56 -2.15 -19.28 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.03 0.97 7.81 -2.39 -0.02 0.95 16 31 H 0.07 1.00 6.17 -2.39 -0.01 0.98 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.05 1.57 8.05 -2.39 -0.02 1.55 16 35 H 0.04 1.19 8.04 -2.39 -0.02 1.18 16 36 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.00 0.14 7.41 -2.39 -0.02 0.12 16 38 H 0.00 -0.11 7.37 -2.39 -0.02 -0.13 16 39 H 0.41 8.15 6.82 -92.71 -0.63 7.52 16 40 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.05 1.25 8.10 -2.38 -0.02 1.23 16 42 H 0.10 0.72 8.13 -2.39 -0.02 0.70 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.40 10.69 8.44 -92.71 -0.78 9.91 16 Total: -1.00 -83.10 363.61 0.78 -82.32 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -0.43 Total: 21.24 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: 5.54 Total: 25.58 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -6.25 Total: -131.02 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -0.10 Total: -45.78 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -83.10 0.78 -82.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974717000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.796 kcal (2) G-P(sol) polarization free energy of solvation -83.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds