Wall clock time and date at job start Fri Apr 10 2020 18:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.88428 * 2 1 4 4 C 1.54902 * 111.00709 * 236.07400 * 2 1 3 5 5 N 1.47422 * 104.83543 * 278.93684 * 4 2 1 6 6 C 1.36931 * 125.65332 * 155.90391 * 5 4 2 7 7 H 1.07998 * 119.99871 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00409 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99367 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 120.00449 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47650 * 89.99701 * 10 8 6 12 12 H 1.48500 * 109.47490 * 209.99802 * 10 8 6 13 13 H 1.48508 * 109.47096 * 330.00110 * 10 8 6 14 14 C 1.47028 * 108.69923 * 335.87046 * 5 4 2 15 15 C 1.54316 * 107.26918 * 1.05899 * 14 5 4 16 16 H 1.09006 * 110.87082 * 140.62897 * 15 14 5 17 17 N 1.46505 * 110.72214 * 263.82762 * 15 14 5 18 18 C 1.34774 * 120.00081 * 268.52702 * 17 15 14 19 19 O 1.21278 * 120.00015 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99968 * 179.97438 * 18 17 15 21 21 H 1.08999 * 109.74014 * 299.59417 * 20 18 17 22 22 C 1.52888 * 109.35342 * 179.32411 * 20 18 17 23 23 C 1.53069 * 108.34252 * 172.63598 * 22 20 18 24 24 C 1.50182 * 109.89088 * 48.87162 * 23 22 20 25 25 O 1.21283 * 118.24617 * 162.39448 * 24 23 22 26 26 N 1.33353 * 123.50537 * 342.41883 * 24 23 22 27 27 C 1.45752 * 124.10987 * 2.22390 * 26 24 23 28 28 H 1.08993 * 109.47005 * 296.12506 * 1 2 3 29 29 H 1.09003 * 109.46619 * 56.12332 * 1 2 3 30 30 H 1.09002 * 109.46730 * 176.12151 * 1 2 3 31 31 H 1.09000 * 109.47174 * 183.88178 * 3 2 1 32 32 H 1.09003 * 109.47053 * 303.87294 * 3 2 1 33 33 H 1.08996 * 109.47670 * 63.88030 * 3 2 1 34 34 H 1.09007 * 110.36775 * 37.77448 * 4 2 1 35 35 H 1.08997 * 110.37115 * 160.09568 * 4 2 1 36 36 H 0.97010 * 119.99531 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.88050 * 241.64314 * 14 5 4 38 38 H 1.09002 * 109.88311 * 120.47924 * 14 5 4 39 39 H 0.96996 * 119.99997 * 88.52108 * 17 15 14 40 40 H 1.08996 * 109.74087 * 52.91293 * 22 20 18 41 41 H 1.08999 * 109.72423 * 292.34745 * 22 20 18 42 42 H 1.09000 * 109.40168 * 288.74730 * 23 22 20 43 43 H 1.08999 * 109.33199 * 168.95661 * 23 22 20 44 44 H 0.97006 * 117.94502 * 182.19872 * 26 24 23 45 45 H 1.09002 * 109.30196 * 101.23763 * 27 26 24 46 46 H 1.08998 * 109.29923 * 220.81895 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0853 -0.8071 -1.1999 5 7 2.0140 -2.2162 -0.7724 6 6 1.9461 -3.3006 -1.6058 7 1 1.9422 -3.1594 -2.6765 8 6 1.8823 -4.5814 -1.0744 9 7 1.8875 -4.7535 0.2305 10 14 1.7905 -6.0607 -2.2112 11 1 3.1640 -6.5285 -2.5271 12 1 1.0373 -7.1524 -1.5432 13 1 1.0971 -5.6775 -3.4673 14 6 2.0286 -2.2643 0.6970 15 6 2.0861 -0.8074 1.2025 16 1 1.4540 -0.6758 2.0808 17 7 3.4667 -0.4149 1.4964 18 6 3.9654 -0.5828 2.7372 19 8 3.2713 -1.0585 3.6105 20 6 5.3857 -0.1795 3.0393 21 1 6.0713 -0.7472 2.4102 22 6 5.6894 -0.4588 4.5115 23 6 7.1820 -0.2169 4.7497 24 6 7.5837 1.1088 4.1696 25 8 8.6265 1.6051 4.5400 26 7 6.8550 1.7697 3.2693 27 6 5.5624 1.3157 2.7717 28 1 -0.3633 0.4525 0.9226 29 1 -0.3633 0.5729 -0.8533 30 1 -0.3633 -1.0254 -0.0695 31 1 3.1629 1.4035 -0.0696 32 1 1.6698 1.9731 -0.8533 33 1 1.7823 1.9303 0.9226 34 1 1.4673 -0.6470 -2.0834 35 1 3.1182 -0.5239 -1.4022 36 1 1.8433 -5.6486 0.6018 37 1 2.9064 -2.8111 1.0413 38 1 1.1219 -2.7475 1.0611 39 1 4.0218 -0.0342 0.7980 40 1 5.4430 -1.4937 4.7484 41 1 5.1040 0.2111 5.1413 42 1 7.7579 -1.0101 4.2731 43 1 7.3812 -0.2185 5.8214 44 1 7.2070 2.6051 2.9242 45 1 4.7686 1.8680 3.2746 46 1 5.5049 1.4990 1.6988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974768101.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:56 Heat of formation + Delta-G solvation = -56.962046 kcal Electronic energy + Delta-G solvation = -26967.152946 eV Core-core repulsion = 23277.826006 eV Total energy + Delta-G solvation = -3689.326940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.78945 -39.66562 -38.17113 -36.27308 -33.97574 -33.22848 -33.08237 -30.77059 -30.29363 -27.99742 -26.83689 -25.68745 -24.97678 -23.91280 -22.90391 -20.83977 -20.04655 -19.38308 -18.72525 -17.74245 -16.83636 -16.62838 -16.32514 -15.73469 -15.50511 -15.02211 -14.60691 -14.34759 -14.11011 -13.96142 -13.85412 -13.76984 -13.40917 -13.17793 -12.65451 -12.16787 -12.06350 -12.02835 -11.93280 -11.72345 -11.51449 -11.36232 -11.20594 -11.12510 -11.02327 -10.81005 -10.45069 -10.31480 -10.07617 -9.95101 -9.92709 -9.69036 -9.58202 -9.37739 -8.68038 -8.53015 -6.87293 -5.73351 -3.08177 2.43172 2.76564 3.03458 3.37157 3.38754 3.42875 3.45088 4.31507 4.39588 4.46691 4.47280 4.57740 4.87552 5.01572 5.07781 5.14445 5.20424 5.21564 5.25947 5.44104 5.49247 5.57017 5.61343 5.74583 5.84480 5.85691 5.95660 6.00797 6.10609 6.13113 6.17292 6.32859 6.49411 6.52021 6.55051 6.61914 6.65827 6.88971 7.03619 7.50601 7.57855 7.75259 7.84273 7.97229 8.21495 8.47441 9.18154 9.78817 10.43678 11.37276 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.003850 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.471617 B = 7270.963939 C = 8210.234118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.175 3.825 15 C 0.123 3.877 16 H 0.090 0.910 17 N -0.707 5.707 18 C 0.521 3.479 19 O -0.533 6.533 20 C -0.127 4.127 21 H 0.107 0.893 22 C -0.104 4.104 23 C -0.136 4.136 24 C 0.521 3.479 25 O -0.562 6.562 26 N -0.718 5.718 27 C 0.121 3.879 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.015 0.985 36 H 0.253 0.747 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.395 0.605 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.401 0.599 45 H 0.074 0.926 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 13.976 3.944 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.050 3.950 15 C 0.018 3.982 16 H 0.108 0.892 17 N -0.358 5.358 18 C 0.305 3.695 19 O -0.409 6.409 20 C -0.148 4.148 21 H 0.126 0.874 22 C -0.142 4.142 23 C -0.176 4.176 24 C 0.308 3.692 25 O -0.440 6.440 26 N -0.370 5.370 27 C -0.004 4.004 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.230 0.770 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.236 0.764 45 H 0.092 0.908 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.617 13.408 4.877 14.996 hybrid contribution 0.308 -0.470 -1.259 1.379 sum 4.925 12.938 3.618 14.309 Atomic orbital electron populations 1.21600 0.93284 1.02973 1.00520 1.22020 0.96394 0.94106 0.96638 1.21670 1.00107 0.95623 1.01373 1.21627 0.96486 0.85787 0.94368 1.44435 1.86945 0.99700 1.01818 1.19019 1.44029 0.83986 0.88912 0.90495 1.24798 1.02123 0.97370 0.95950 1.69959 1.56597 1.20858 1.09146 0.86149 0.77521 0.82710 0.79526 1.21682 1.21681 1.20728 1.21519 1.01633 0.88487 0.83389 1.22517 0.80997 0.97564 0.97134 0.89198 1.46043 1.14974 1.63793 1.10950 1.20024 0.87986 0.78755 0.82715 1.90723 1.60029 1.43996 1.46158 1.21596 0.96454 0.96649 1.00148 0.87450 1.21416 0.94113 1.04839 0.93800 1.21711 0.97807 0.94622 1.03479 1.20296 0.83331 0.87261 0.78287 1.90758 1.24707 1.68334 1.60242 1.45422 1.21311 1.26483 1.43803 1.21323 0.85250 0.93732 1.00090 0.93336 0.92896 0.91188 0.93162 0.92661 0.92848 0.94115 0.96786 0.93681 0.93418 0.92831 0.77021 0.88992 0.90435 0.87881 0.87715 0.76381 0.90793 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.57 37.16 0.32 -1.56 16 2 C -0.09 -1.36 0.83 -152.36 -0.13 -1.48 16 3 C -0.13 -1.45 8.22 37.16 0.31 -1.14 16 4 C 0.14 2.65 6.12 -2.53 -0.02 2.63 16 5 N -0.60 -14.30 3.38 -170.08 -0.57 -14.88 16 6 C -0.23 -6.18 10.28 -15.06 -0.15 -6.33 16 7 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 8 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 9 N -0.92 -26.59 10.31 55.49 0.57 -26.02 16 10 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.18 4.06 4.79 -3.06 -0.01 4.04 16 15 C 0.12 2.12 2.59 -66.10 -0.17 1.95 16 16 H 0.09 1.64 7.45 -51.93 -0.39 1.25 16 17 N -0.71 -10.01 4.36 -52.03 -0.23 -10.23 16 18 C 0.52 7.45 7.14 -10.99 -0.08 7.37 16 19 O -0.53 -9.82 15.51 5.56 0.09 -9.73 16 20 C -0.13 -1.29 2.58 -91.87 -0.24 -1.53 16 21 H 0.11 1.04 8.12 -51.93 -0.42 0.62 16 22 C -0.10 -1.05 4.69 -26.75 -0.13 -1.18 16 23 C -0.14 -1.27 6.03 -28.10 -0.17 -1.44 16 24 C 0.52 5.83 7.71 -11.87 -0.09 5.74 16 25 O -0.56 -8.48 17.78 5.56 0.10 -8.38 16 26 N -0.72 -6.20 5.45 -61.39 -0.33 -6.53 16 27 C 0.12 0.94 6.33 -4.48 -0.03 0.91 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.26 7.91 -51.93 -0.41 0.85 16 31 H 0.05 0.49 6.48 -51.93 -0.34 0.15 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.75 8.05 -51.92 -0.42 0.34 16 35 H 0.01 0.26 7.99 -51.93 -0.41 -0.16 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.05 1.27 7.41 -51.93 -0.38 0.89 16 38 H 0.05 1.43 7.38 -51.93 -0.38 1.04 16 39 H 0.39 4.69 6.74 -40.82 -0.28 4.42 16 40 H 0.09 1.04 7.87 -51.93 -0.41 0.63 16 41 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.40 2.97 8.80 -40.82 -0.36 2.61 16 45 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 46 H 0.08 0.49 7.84 -51.93 -0.41 0.08 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -33.65 362.30 -8.16 -41.81 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.53 Total: 4.08 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.68 Total: 7.73 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.56 Total: -57.66 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.18 Total: -18.11 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.65 -8.16 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974768101.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.149 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds