Wall clock time and date at job start Fri Apr 10 2020 18:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 110.88981 * 2 1 4 4 C 1.54914 * 111.00359 * 236.08027 * 2 1 3 5 5 N 1.47421 * 104.83227 * 278.93383 * 4 2 1 6 6 C 1.36931 * 125.65228 * 155.91697 * 5 4 2 7 7 H 1.08008 * 119.99989 * 353.86761 * 6 5 4 8 8 C 1.38812 * 120.00554 * 173.86917 * 6 5 4 9 9 N 1.31618 * 119.99633 * 6.84294 * 8 6 5 10 10 Si 1.86802 * 120.00388 * 186.83891 * 8 6 5 11 11 H 1.48497 * 109.46984 * 94.98480 * 10 8 6 12 12 H 1.48497 * 109.47129 * 214.98639 * 10 8 6 13 13 H 1.48503 * 109.46826 * 334.98898 * 10 8 6 14 14 C 1.47028 * 108.70203 * 335.87376 * 5 4 2 15 15 C 1.54323 * 107.27034 * 1.05514 * 14 5 4 16 16 H 1.09001 * 110.71572 * 140.73912 * 15 14 5 17 17 N 1.46498 * 110.72153 * 263.82865 * 15 14 5 18 18 C 1.34767 * 120.00225 * 273.55109 * 17 15 14 19 19 O 1.21286 * 120.00098 * 359.97438 * 18 17 15 20 20 C 1.50709 * 120.00324 * 180.02562 * 18 17 15 21 21 C 1.53004 * 110.85115 * 300.69939 * 20 18 17 22 22 C 1.54479 * 110.96847 * 64.48616 * 20 18 17 23 23 N 1.46861 * 105.42389 * 92.71728 * 22 20 18 24 24 C 1.34416 * 111.30768 * 17.02212 * 23 22 20 25 25 O 1.21282 * 124.93812 * 179.54887 * 24 23 22 26 26 C 1.51276 * 110.12008 * 359.58345 * 24 23 22 27 27 H 1.09001 * 109.47225 * 296.11574 * 1 2 3 28 28 H 1.09006 * 109.47218 * 56.11778 * 1 2 3 29 29 H 1.08998 * 109.47474 * 176.11533 * 1 2 3 30 30 H 1.08998 * 109.47712 * 183.88131 * 3 2 1 31 31 H 1.09007 * 109.46974 * 303.88464 * 3 2 1 32 32 H 1.09006 * 109.46916 * 63.87857 * 3 2 1 33 33 H 1.08996 * 110.36701 * 37.77237 * 4 2 1 34 34 H 1.09001 * 110.37056 * 159.98591 * 4 2 1 35 35 H 0.96997 * 119.99812 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.87872 * 241.63762 * 14 5 4 37 37 H 1.09000 * 109.88399 * 120.48009 * 14 5 4 38 38 H 0.97004 * 119.99506 * 93.54488 * 17 15 14 39 39 H 1.09002 * 109.47051 * 59.29746 * 21 20 18 40 40 H 1.09002 * 109.46798 * 179.29757 * 21 20 18 41 41 H 1.08995 * 109.46955 * 299.29393 * 21 20 18 42 42 H 1.09004 * 110.24638 * 211.70713 * 22 20 18 43 43 H 1.09006 * 110.24472 * 333.70439 * 22 20 18 44 44 H 0.97002 * 124.33955 * 197.01513 * 23 22 20 45 45 H 1.09001 * 110.49189 * 225.06680 * 26 24 23 46 46 H 1.09000 * 110.48846 * 102.42689 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0852 -0.8070 -1.2001 5 7 2.0138 -2.2161 -0.7727 6 6 1.9461 -3.3005 -1.6061 7 1 1.8421 -3.1571 -2.6715 8 6 2.0112 -4.5841 -1.0817 9 7 2.0021 -4.7635 0.2221 10 14 2.1116 -6.0568 -2.2265 11 1 3.5334 -6.4426 -2.4132 12 1 1.3633 -7.1952 -1.6354 13 1 1.5179 -5.7033 -3.5410 14 6 2.0284 -2.2644 0.6967 15 6 2.0861 -0.8075 1.2024 16 1 1.4548 -0.6793 2.0817 17 7 3.4667 -0.4151 1.4963 18 6 3.9980 -0.6755 2.7071 19 8 3.3332 -1.2342 3.5537 20 6 5.4180 -0.2713 3.0097 21 6 6.3931 -0.9388 2.0377 22 6 5.5735 1.2654 2.9807 23 7 5.3679 1.7050 4.3668 24 6 5.4874 0.6794 5.2273 25 8 5.3730 0.7662 6.4316 26 6 5.7863 -0.5987 4.4753 27 1 -0.3634 0.4524 0.9227 28 1 -0.3634 0.5729 -0.8532 29 1 -0.3634 -1.0253 -0.0696 30 1 3.1629 1.4034 -0.0696 31 1 1.6697 1.9732 -0.8532 32 1 1.7823 1.9302 0.9228 33 1 1.4671 -0.6468 -2.0835 34 1 3.1175 -0.5224 -1.4036 35 1 2.0480 -5.6605 0.5886 36 1 2.9062 -2.8113 1.0409 37 1 1.1218 -2.7476 1.0608 38 1 3.9983 0.0321 0.8193 39 1 6.1447 -0.6481 1.0169 40 1 7.4102 -0.6218 2.2685 41 1 6.3191 -2.0218 2.1354 42 1 6.5737 1.5370 2.6429 43 1 4.8210 1.7084 2.3282 44 1 5.1713 2.6184 4.6277 45 1 5.1694 -1.4153 4.8504 46 1 6.8438 -0.8504 4.5557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974877894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:36 Heat of formation + Delta-G solvation = -48.383820 kcal Electronic energy + Delta-G solvation = -27515.492493 eV Core-core repulsion = 23826.537533 eV Total energy + Delta-G solvation = -3688.954960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07839 -39.41403 -37.99021 -36.37014 -33.96433 -33.26265 -32.68848 -30.74463 -28.71151 -27.96596 -26.87380 -26.29786 -25.67809 -23.94770 -22.53278 -20.71972 -20.28038 -19.54547 -18.69128 -17.56454 -16.98735 -16.71406 -15.90533 -15.50517 -15.13181 -14.81645 -14.54782 -14.10646 -14.01738 -13.90278 -13.79028 -13.34658 -13.32157 -12.87812 -12.65470 -12.48816 -12.15042 -12.06136 -12.03563 -11.74826 -11.66467 -11.42393 -11.18867 -11.12734 -11.01042 -10.80941 -10.43557 -10.28476 -10.04986 -9.91945 -9.91038 -9.68096 -9.59336 -9.25010 -8.64775 -8.50075 -6.84892 -5.72731 -3.06816 2.54522 2.84275 3.19584 3.34848 3.38554 3.43732 3.46477 4.07729 4.25056 4.46789 4.48884 4.78815 4.87960 5.01128 5.15215 5.20115 5.23439 5.24320 5.47992 5.48378 5.56940 5.57046 5.65037 5.74316 5.85046 5.89765 5.96288 6.01867 6.10481 6.12975 6.18274 6.33796 6.52770 6.56208 6.62102 6.63178 6.68259 6.83493 6.89696 7.50361 7.63516 7.77732 7.86967 8.14551 8.23206 8.51680 9.19310 9.80299 10.45854 11.38187 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.004443 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.079530 B = 6301.071151 C = 7208.596623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.145 3.855 5 N -0.602 5.602 6 C -0.233 4.233 7 H 0.077 0.923 8 C -0.004 4.004 9 N -0.915 5.915 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.175 3.825 15 C 0.124 3.876 16 H 0.086 0.914 17 N -0.705 5.705 18 C 0.524 3.476 19 O -0.529 6.529 20 C -0.097 4.097 21 C -0.135 4.135 22 C 0.114 3.886 23 N -0.734 5.734 24 C 0.527 3.473 25 O -0.534 6.534 26 C -0.140 4.140 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.015 0.985 35 H 0.253 0.747 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.394 0.606 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.410 0.590 45 H 0.122 0.878 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 15.009 0.944 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.018 3.982 5 N -0.328 5.328 6 C -0.361 4.361 7 H 0.095 0.905 8 C -0.201 4.201 9 N -0.562 5.562 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.050 3.950 15 C 0.020 3.980 16 H 0.104 0.896 17 N -0.356 5.356 18 C 0.309 3.691 19 O -0.405 6.405 20 C -0.100 4.100 21 C -0.192 4.192 22 C -0.011 4.011 23 N -0.391 5.391 24 C 0.314 3.686 25 O -0.411 6.411 26 C -0.181 4.181 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.230 0.770 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.248 0.752 45 H 0.140 0.860 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.172 14.266 2.178 16.115 hybrid contribution 0.227 -0.271 -0.977 1.039 sum 7.399 13.995 1.201 15.876 Atomic orbital electron populations 1.21599 0.93275 1.02982 1.00532 1.22011 0.96403 0.94066 0.96620 1.21682 1.00067 0.95688 1.01419 1.21610 0.96509 0.85824 0.94214 1.44426 1.86905 0.99724 1.01772 1.19014 1.43862 0.83818 0.89388 0.90493 1.24820 1.02015 0.97353 0.95900 1.69975 1.56115 1.20720 1.09398 0.86166 0.77554 0.82748 0.79687 1.21682 1.21789 1.20678 1.21523 1.01636 0.88493 0.83352 1.22484 0.80877 0.97720 0.96964 0.89588 1.45939 1.15118 1.60563 1.13938 1.19892 0.87609 0.79178 0.82457 1.90733 1.61640 1.41382 1.46701 1.21747 0.95078 0.95723 0.97498 1.21779 0.97373 1.02071 0.98007 1.22180 1.02638 0.92704 0.83560 1.46206 1.73523 1.11539 1.07802 1.20855 0.74620 0.86547 0.86555 1.90742 1.51093 1.85642 1.13586 1.22399 1.04642 0.98338 0.92686 0.93354 0.92856 0.91187 0.93153 0.92551 0.92883 0.94197 0.96719 0.93653 0.92970 0.93287 0.77043 0.91176 0.91064 0.90603 0.89726 0.89870 0.75188 0.85992 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.57 37.15 0.32 -1.60 16 2 C -0.09 -1.38 0.83 -152.36 -0.13 -1.50 16 3 C -0.13 -1.49 8.22 37.16 0.31 -1.18 16 4 C 0.14 2.68 6.14 -2.53 -0.02 2.67 16 5 N -0.60 -14.37 3.38 -170.07 -0.57 -14.94 16 6 C -0.23 -6.23 10.26 -15.06 -0.15 -6.39 16 7 H 0.08 2.00 7.84 -52.48 -0.41 1.59 16 8 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 9 N -0.92 -26.74 10.36 55.49 0.58 -26.17 16 10 Si 0.91 21.75 29.56 -169.99 -5.02 16.73 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 14 C 0.18 4.14 4.80 -3.06 -0.01 4.12 16 15 C 0.12 2.22 2.51 -66.10 -0.17 2.06 16 16 H 0.09 1.65 7.60 -51.93 -0.39 1.25 16 17 N -0.70 -10.41 4.28 -52.03 -0.22 -10.64 16 18 C 0.52 8.17 6.51 -10.99 -0.07 8.10 16 19 O -0.53 -10.75 15.24 5.55 0.08 -10.66 16 20 C -0.10 -1.06 0.84 -154.02 -0.13 -1.19 16 21 C -0.13 -1.23 8.38 37.16 0.31 -0.92 16 22 C 0.11 0.92 6.89 -3.07 -0.02 0.90 16 23 N -0.73 -7.38 6.24 -59.13 -0.37 -7.75 16 24 C 0.53 7.29 8.43 -10.86 -0.09 7.20 16 25 O -0.53 -9.57 18.03 5.56 0.10 -9.47 16 26 C -0.14 -1.71 5.78 -26.75 -0.15 -1.86 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.28 7.91 -51.93 -0.41 0.86 16 30 H 0.05 0.50 6.38 -51.93 -0.33 0.17 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.74 8.05 -51.93 -0.42 0.32 16 34 H 0.02 0.27 7.98 -51.93 -0.41 -0.15 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.05 1.41 7.27 -51.93 -0.38 1.04 16 37 H 0.05 1.33 7.55 -51.93 -0.39 0.94 16 38 H 0.39 4.78 6.37 -40.82 -0.26 4.52 16 39 H 0.07 0.60 7.63 -51.93 -0.40 0.20 16 40 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 43 H 0.08 0.59 7.74 -51.93 -0.40 0.19 16 44 H 0.41 3.38 8.96 -40.82 -0.37 3.02 16 45 H 0.12 1.81 6.97 -51.93 -0.36 1.45 16 46 H 0.11 1.03 7.90 -51.93 -0.41 0.62 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -34.83 363.21 -7.49 -42.32 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.42 Total: 4.92 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.11 Total: 10.20 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.59 Total: -59.50 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.13 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.83 -7.49 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974877894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.066 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds