Wall clock time and date at job start Fri Apr 10 2020 18:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 110.88981 * 2 1 4 4 C 1.54914 * 111.00359 * 236.08027 * 2 1 3 5 5 N 1.47421 * 104.83227 * 278.93383 * 4 2 1 6 6 C 1.36931 * 125.65228 * 155.91697 * 5 4 2 7 7 H 1.08008 * 119.99989 * 353.86761 * 6 5 4 8 8 C 1.38812 * 120.00554 * 173.86917 * 6 5 4 9 9 N 1.31618 * 119.99633 * 6.84294 * 8 6 5 10 10 Si 1.86802 * 120.00388 * 186.83891 * 8 6 5 11 11 H 1.48497 * 109.46984 * 94.98480 * 10 8 6 12 12 H 1.48497 * 109.47129 * 214.98639 * 10 8 6 13 13 H 1.48503 * 109.46826 * 334.98898 * 10 8 6 14 14 C 1.47028 * 108.70203 * 335.87376 * 5 4 2 15 15 C 1.54323 * 107.27034 * 1.05514 * 14 5 4 16 16 H 1.09001 * 110.71572 * 140.73912 * 15 14 5 17 17 N 1.46498 * 110.72153 * 263.82865 * 15 14 5 18 18 C 1.34767 * 120.00225 * 273.55109 * 17 15 14 19 19 O 1.21286 * 120.00098 * 359.97438 * 18 17 15 20 20 C 1.50709 * 120.00324 * 180.02562 * 18 17 15 21 21 C 1.53004 * 110.85115 * 300.69939 * 20 18 17 22 22 C 1.54479 * 110.96847 * 64.48616 * 20 18 17 23 23 N 1.46861 * 105.42389 * 92.71728 * 22 20 18 24 24 C 1.34416 * 111.30768 * 17.02212 * 23 22 20 25 25 O 1.21282 * 124.93812 * 179.54887 * 24 23 22 26 26 C 1.51276 * 110.12008 * 359.58345 * 24 23 22 27 27 H 1.09001 * 109.47225 * 296.11574 * 1 2 3 28 28 H 1.09006 * 109.47218 * 56.11778 * 1 2 3 29 29 H 1.08998 * 109.47474 * 176.11533 * 1 2 3 30 30 H 1.08998 * 109.47712 * 183.88131 * 3 2 1 31 31 H 1.09007 * 109.46974 * 303.88464 * 3 2 1 32 32 H 1.09006 * 109.46916 * 63.87857 * 3 2 1 33 33 H 1.08996 * 110.36701 * 37.77237 * 4 2 1 34 34 H 1.09001 * 110.37056 * 159.98591 * 4 2 1 35 35 H 0.96997 * 119.99812 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.87872 * 241.63762 * 14 5 4 37 37 H 1.09000 * 109.88399 * 120.48009 * 14 5 4 38 38 H 0.97004 * 119.99506 * 93.54488 * 17 15 14 39 39 H 1.09002 * 109.47051 * 59.29746 * 21 20 18 40 40 H 1.09002 * 109.46798 * 179.29757 * 21 20 18 41 41 H 1.08995 * 109.46955 * 299.29393 * 21 20 18 42 42 H 1.09004 * 110.24638 * 211.70713 * 22 20 18 43 43 H 1.09006 * 110.24472 * 333.70439 * 22 20 18 44 44 H 0.97002 * 124.33955 * 197.01513 * 23 22 20 45 45 H 1.09001 * 110.49189 * 225.06680 * 26 24 23 46 46 H 1.09000 * 110.48846 * 102.42689 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0852 -0.8070 -1.2001 5 7 2.0138 -2.2161 -0.7727 6 6 1.9461 -3.3005 -1.6061 7 1 1.8421 -3.1571 -2.6715 8 6 2.0112 -4.5841 -1.0817 9 7 2.0021 -4.7635 0.2221 10 14 2.1116 -6.0568 -2.2265 11 1 3.5334 -6.4426 -2.4132 12 1 1.3633 -7.1952 -1.6354 13 1 1.5179 -5.7033 -3.5410 14 6 2.0284 -2.2644 0.6967 15 6 2.0861 -0.8075 1.2024 16 1 1.4548 -0.6793 2.0817 17 7 3.4667 -0.4151 1.4963 18 6 3.9980 -0.6755 2.7071 19 8 3.3332 -1.2342 3.5537 20 6 5.4180 -0.2713 3.0097 21 6 6.3931 -0.9388 2.0377 22 6 5.5735 1.2654 2.9807 23 7 5.3679 1.7050 4.3668 24 6 5.4874 0.6794 5.2273 25 8 5.3730 0.7662 6.4316 26 6 5.7863 -0.5987 4.4753 27 1 -0.3634 0.4524 0.9227 28 1 -0.3634 0.5729 -0.8532 29 1 -0.3634 -1.0253 -0.0696 30 1 3.1629 1.4034 -0.0696 31 1 1.6697 1.9732 -0.8532 32 1 1.7823 1.9302 0.9228 33 1 1.4671 -0.6468 -2.0835 34 1 3.1175 -0.5224 -1.4036 35 1 2.0480 -5.6605 0.5886 36 1 2.9062 -2.8113 1.0409 37 1 1.1218 -2.7476 1.0608 38 1 3.9983 0.0321 0.8193 39 1 6.1447 -0.6481 1.0169 40 1 7.4102 -0.6218 2.2685 41 1 6.3191 -2.0218 2.1354 42 1 6.5737 1.5370 2.6429 43 1 4.8210 1.7084 2.3282 44 1 5.1713 2.6184 4.6277 45 1 5.1694 -1.4153 4.8504 46 1 6.8438 -0.8504 4.5557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974877894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:34 Heat of formation + Delta-G solvation = -75.968290 kcal Electronic energy + Delta-G solvation = -27516.688646 eV Core-core repulsion = 23826.537533 eV Total energy + Delta-G solvation = -3690.151112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15528 -40.73207 -39.36694 -37.49580 -35.70441 -34.61430 -33.68426 -32.59574 -30.01608 -29.20758 -28.04874 -27.39193 -27.05654 -25.44326 -23.85981 -22.02200 -21.67049 -20.84678 -19.94352 -18.68792 -18.61201 -17.94881 -17.31711 -16.82824 -16.38506 -16.16479 -15.87169 -15.65560 -15.46598 -15.08273 -14.92908 -14.76227 -14.24024 -13.96448 -13.78998 -13.69147 -13.47757 -13.34989 -13.15790 -13.03926 -12.93411 -12.82321 -12.68761 -12.60240 -12.55473 -12.10293 -12.03788 -11.83919 -11.71148 -11.49905 -11.30148 -10.99269 -10.88834 -10.68572 -10.16499 -9.95815 -8.85835 -7.83350 -5.18552 1.45362 1.46487 1.49145 1.55805 1.62281 2.13631 2.39467 2.50323 3.17955 3.32845 3.35556 3.50669 3.58168 3.74290 3.84752 3.98313 4.08563 4.17048 4.41850 4.52054 4.54390 4.57309 4.68953 4.74028 4.77844 4.86542 4.92116 4.92713 4.96834 4.98673 5.07744 5.15800 5.19621 5.29880 5.34223 5.38313 5.49368 5.58365 5.72447 5.78555 5.79667 5.95343 6.19555 6.59825 7.09775 7.19229 7.30483 7.80420 8.44648 9.26260 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.004443 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.079530 B = 6301.071151 C = 7208.596623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.139 3.861 5 N -0.619 5.619 6 C -0.235 4.235 7 H 0.087 0.913 8 C -0.067 4.067 9 N -0.952 5.952 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.302 1.302 13 H -0.264 1.264 14 C 0.194 3.806 15 C 0.138 3.862 16 H 0.069 0.931 17 N -0.690 5.690 18 C 0.516 3.484 19 O -0.586 6.586 20 C -0.087 4.087 21 C -0.132 4.132 22 C 0.118 3.882 23 N -0.719 5.719 24 C 0.518 3.482 25 O -0.588 6.588 26 C -0.142 4.142 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.039 0.961 35 H 0.242 0.758 36 H 0.006 0.994 37 H -0.007 1.007 38 H 0.413 0.587 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.046 0.954 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.421 0.579 45 H 0.085 0.915 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.711 18.614 -1.743 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.076 4.076 3 C -0.182 4.182 4 C 0.014 3.986 5 N -0.345 5.345 6 C -0.364 4.364 7 H 0.105 0.895 8 C -0.260 4.260 9 N -0.602 5.602 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.230 1.230 13 H -0.188 1.188 14 C 0.067 3.933 15 C 0.032 3.968 16 H 0.087 0.913 17 N -0.342 5.342 18 C 0.303 3.697 19 O -0.466 6.466 20 C -0.091 4.091 21 C -0.189 4.189 22 C -0.006 4.006 23 N -0.375 5.375 24 C 0.306 3.694 25 O -0.468 6.468 26 C -0.182 4.182 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.012 0.988 38 H 0.251 0.749 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.065 0.935 42 H 0.150 0.850 43 H 0.122 0.878 44 H 0.261 0.739 45 H 0.103 0.897 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.187 17.962 -0.615 20.185 hybrid contribution -0.455 -1.398 -0.189 1.482 sum 8.733 16.564 -0.804 18.742 Atomic orbital electron populations 1.21605 0.93337 1.00866 1.02501 1.21990 0.96374 0.96191 0.93023 1.21671 1.01405 0.91995 1.03094 1.21905 0.97992 0.83081 0.95588 1.44666 1.86548 1.01712 1.01603 1.19469 1.41825 0.84878 0.90237 0.89489 1.25643 1.02919 1.00284 0.97113 1.70248 1.58274 1.20260 1.11380 0.85136 0.77299 0.79014 0.78391 1.21428 1.22976 1.18801 1.21070 0.96912 0.91579 0.83730 1.22018 0.82833 0.94696 0.97271 0.91301 1.45710 1.13981 1.60098 1.14383 1.20870 0.89300 0.77791 0.81726 1.90722 1.63591 1.43761 1.48492 1.21720 0.91788 0.98567 0.96996 1.21831 0.98893 1.00173 0.98011 1.22491 1.06094 0.89605 0.82413 1.46179 1.71672 1.11380 1.08224 1.21116 0.74320 0.87830 0.86182 1.90708 1.53768 1.86507 1.15848 1.22410 1.05845 0.96662 0.93283 0.91918 0.90230 0.95463 0.90959 0.90340 0.91738 0.93602 0.94335 0.94859 0.97547 0.98848 0.74868 0.89905 0.87051 0.93458 0.84971 0.87810 0.73906 0.89679 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.57 71.98 0.62 -3.03 16 2 C -0.07 -2.12 0.83 -50.79 -0.04 -2.17 16 3 C -0.12 -2.18 8.22 71.98 0.59 -1.59 16 4 C 0.14 4.85 6.14 86.86 0.53 5.39 16 5 N -0.62 -30.07 3.38 -691.98 -2.34 -32.41 16 6 C -0.23 -12.77 10.26 84.03 0.86 -11.90 16 7 H 0.09 4.45 7.84 -2.91 -0.02 4.43 16 8 C -0.07 -3.81 5.48 84.86 0.47 -3.34 16 9 N -0.95 -59.23 10.36 21.65 0.22 -59.00 16 10 Si 0.97 45.83 29.56 68.60 2.03 47.86 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 14 C 0.19 9.69 4.80 86.73 0.42 10.11 16 15 C 0.14 5.00 2.51 46.18 0.12 5.11 16 16 H 0.07 2.76 7.60 -2.39 -0.02 2.74 16 17 N -0.69 -19.48 4.28 -436.93 -1.87 -21.35 16 18 C 0.52 16.03 6.51 87.66 0.57 16.60 16 19 O -0.59 -25.30 15.24 -3.05 -0.05 -25.35 16 20 C -0.09 -1.72 0.84 -51.87 -0.04 -1.76 16 21 C -0.13 -1.98 8.38 71.98 0.60 -1.38 16 22 C 0.12 1.32 6.89 86.81 0.60 1.92 16 23 N -0.72 -12.35 6.24 -459.59 -2.87 -15.22 16 24 C 0.52 14.00 8.43 87.90 0.74 14.74 16 25 O -0.59 -21.57 18.03 -3.04 -0.05 -21.63 16 26 C -0.14 -3.39 5.78 30.58 0.18 -3.21 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.03 1.00 7.91 -2.39 -0.02 0.98 16 30 H 0.07 0.97 6.38 -2.39 -0.02 0.96 16 31 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.05 1.57 8.05 -2.39 -0.02 1.55 16 34 H 0.04 1.21 7.98 -2.39 -0.02 1.19 16 35 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.01 0.37 7.27 -2.39 -0.02 0.35 16 37 H -0.01 -0.40 7.55 -2.39 -0.02 -0.42 16 38 H 0.41 8.45 6.37 -92.71 -0.59 7.86 16 39 H 0.08 1.06 7.63 -2.39 -0.02 1.04 16 40 H 0.11 0.84 8.11 -2.39 -0.02 0.82 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.13 0.45 7.87 -2.39 -0.02 0.43 16 43 H 0.10 0.85 7.74 -2.38 -0.02 0.83 16 44 H 0.42 5.64 8.96 -92.71 -0.83 4.81 16 45 H 0.08 2.73 6.97 -2.39 -0.02 2.71 16 46 H 0.14 2.40 7.90 -2.39 -0.02 2.38 16 Total: -1.00 -86.43 363.21 0.85 -85.58 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.43 Total: 16.03 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 6.21 Total: 25.48 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -6.86 Total: -127.98 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -0.10 Total: -46.97 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -86.43 0.85 -85.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974877894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.616 kcal (2) G-P(sol) polarization free energy of solvation -86.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds