Wall clock time and date at job start Fri Apr 10 2020 18:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34558 * 124.43488 * 2 1 4 4 O 1.21286 * 124.91544 * 359.54247 * 3 2 1 5 5 C 1.51278 * 110.14219 * 179.64356 * 3 2 1 6 6 C 1.54630 * 104.19416 * 343.67757 * 5 3 2 7 7 C 1.46763 * 124.34593 * 179.97438 * 2 1 3 8 8 H 1.09003 * 110.24374 * 77.93186 * 7 2 1 9 9 C 1.50697 * 110.25104 * 316.01839 * 7 2 1 10 10 O 1.21284 * 119.99910 * 342.63324 * 9 7 2 11 11 N 1.34769 * 120.00099 * 162.63255 * 9 7 2 12 12 C 1.46509 * 120.00026 * 180.02562 * 11 9 7 13 13 H 1.09005 * 110.63761 * 328.13669 * 12 11 9 14 14 C 1.54337 * 110.51544 * 91.49830 * 12 11 9 15 15 N 1.47018 * 107.26535 * 96.45506 * 14 12 11 16 16 C 1.36931 * 125.64993 * 178.84800 * 15 14 12 17 17 H 1.08000 * 120.00644 * 179.69137 * 16 15 14 18 18 C 1.38815 * 119.99715 * 359.68774 * 16 15 14 19 19 N 1.31611 * 120.00107 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99746 * 179.72150 * 18 16 15 21 21 H 1.48506 * 109.46826 * 60.00664 * 20 18 16 22 22 H 1.48497 * 109.47051 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47422 * 300.00472 * 20 18 16 24 24 C 1.47429 * 108.70222 * 358.58459 * 15 14 12 25 25 C 1.54908 * 104.83439 * 24.35453 * 24 15 14 26 26 C 1.52998 * 111.00333 * 81.06602 * 25 24 15 27 27 C 1.52991 * 111.00528 * 204.87903 * 25 24 15 28 28 H 1.09002 * 109.47115 * 270.07473 * 1 2 3 29 29 H 1.08995 * 109.47260 * 30.07495 * 1 2 3 30 30 H 1.08998 * 109.47095 * 150.07724 * 1 2 3 31 31 H 1.08997 * 110.48535 * 224.99925 * 5 3 2 32 32 H 1.09006 * 110.48631 * 102.35076 * 5 3 2 33 33 H 1.09006 * 110.96494 * 266.67923 * 6 5 3 34 34 H 1.09004 * 111.00192 * 142.92989 * 6 5 3 35 35 H 0.96996 * 120.00089 * 359.97438 * 11 9 7 36 36 H 1.08997 * 109.99180 * 336.97975 * 14 12 11 37 37 H 1.09001 * 109.77761 * 215.80940 * 14 12 11 38 38 H 0.97000 * 120.00330 * 179.97438 * 19 18 16 39 39 H 1.08999 * 110.36417 * 143.19881 * 24 15 14 40 40 H 1.09004 * 110.36648 * 265.51738 * 24 15 14 41 41 H 1.08997 * 109.47194 * 61.45342 * 26 25 24 42 42 H 1.08994 * 109.47405 * 181.45757 * 26 25 24 43 43 H 1.09001 * 109.47089 * 301.45449 * 26 25 24 44 44 H 1.09001 * 109.47443 * 58.55013 * 27 25 24 45 45 H 1.08997 * 109.47231 * 178.54522 * 27 25 24 46 46 H 1.09000 * 109.47219 * 298.54771 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2259 1.1098 0.0000 4 8 1.7982 2.2447 -0.0079 5 6 3.6919 0.7363 0.0088 6 6 3.7020 -0.7499 0.4354 7 6 2.2931 -1.2117 0.0005 8 1 2.3293 -1.6442 -0.9994 9 6 1.7474 -2.2159 0.9828 10 8 0.9708 -1.8613 1.8443 11 7 2.1223 -3.5080 0.9040 12 6 1.5914 -4.4844 1.8586 13 1 1.4052 -4.0151 2.8247 14 6 0.3081 -5.1392 1.3051 15 7 0.7010 -6.4122 0.6833 16 6 -0.1498 -7.3086 0.0938 17 1 0.2396 -8.2172 -0.3412 18 6 -1.5131 -7.0495 0.0553 19 7 -1.9876 -5.9420 0.5849 20 14 -2.6729 -8.2686 -0.7559 21 1 -2.5763 -9.5792 -0.0641 22 1 -4.0659 -7.7622 -0.6652 23 1 -2.2985 -8.4336 -2.1834 24 6 2.1636 -6.5607 0.7939 25 6 2.5602 -5.6868 2.0100 26 6 2.3107 -6.4299 3.3239 27 6 4.0179 -5.2340 1.9078 28 1 -0.3633 0.0013 1.0277 29 1 -0.3633 0.8893 -0.5150 30 1 -0.3633 -0.8907 -0.5126 31 1 4.2361 1.3444 0.7315 32 1 4.1206 0.8503 -0.9869 33 1 3.8288 -0.8453 1.5139 34 1 4.4752 -1.3039 -0.0969 35 1 2.7431 -3.7917 0.2148 36 1 -0.1508 -4.4889 0.5604 37 1 -0.3919 -5.3251 2.1197 38 1 -2.9402 -5.7608 0.5577 39 1 2.4265 -7.6031 0.9740 40 1 2.6514 -6.1963 -0.1102 41 1 2.9232 -7.3311 3.3536 42 1 2.5732 -5.7844 4.1620 43 1 1.2579 -6.7038 3.3922 44 1 4.1597 -4.6710 0.9852 45 1 4.2624 -4.6010 2.7608 46 1 4.6703 -6.1072 1.9044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974933045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:45 Heat of formation + Delta-G solvation = -37.231756 kcal Electronic energy + Delta-G solvation = -27227.958826 eV Core-core repulsion = 23539.487456 eV Total energy + Delta-G solvation = -3688.471370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91196 -39.47976 -37.97230 -36.11194 -34.00201 -33.25043 -32.66994 -30.75987 -29.09224 -27.66278 -26.66338 -26.60939 -25.68295 -23.64816 -22.59071 -20.78604 -20.06367 -19.54638 -18.73289 -17.55927 -16.82672 -16.73535 -16.05740 -15.75535 -15.04029 -14.90852 -14.32562 -14.03389 -13.98125 -13.92750 -13.80356 -13.48637 -13.31865 -12.79636 -12.64711 -12.44418 -12.24912 -12.06759 -12.01732 -11.89034 -11.72829 -11.44674 -11.35851 -11.13545 -11.03791 -10.80199 -10.45627 -10.33122 -10.08985 -9.96527 -9.94167 -9.73729 -9.68594 -8.70874 -8.65759 -8.52634 -6.88172 -5.73949 -3.08856 2.47386 2.68043 2.92310 3.37454 3.41801 3.43044 3.44012 4.12283 4.21053 4.46095 4.56663 4.74466 4.86164 4.96883 5.14938 5.21704 5.23754 5.33867 5.40468 5.48666 5.56777 5.57036 5.65312 5.71384 5.74440 5.84960 5.96177 6.04012 6.10360 6.13279 6.16729 6.32485 6.36438 6.51697 6.54561 6.60930 6.64419 6.87808 7.02922 7.49435 7.56113 7.73003 7.82113 8.08199 8.20718 8.44862 9.17433 9.78155 10.43001 11.36710 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.004315 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.615886 B = 6487.355717 C = 7763.772633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.597 5.597 3 C 0.517 3.483 4 O -0.535 6.535 5 C -0.152 4.152 6 C -0.119 4.119 7 C 0.111 3.889 8 H 0.103 0.897 9 C 0.505 3.495 10 O -0.527 6.527 11 N -0.704 5.704 12 C 0.124 3.876 13 H 0.090 0.910 14 C 0.176 3.824 15 N -0.603 5.603 16 C -0.232 4.232 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.144 3.856 25 C -0.090 4.090 26 C -0.126 4.126 27 C -0.130 4.130 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.396 0.604 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.253 0.747 39 H 0.041 0.959 40 H 0.015 0.985 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.951 6.672 -0.222 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.331 5.331 3 C 0.305 3.695 4 O -0.412 6.412 5 C -0.192 4.192 6 C -0.158 4.158 7 C 0.003 3.997 8 H 0.121 0.879 9 C 0.289 3.711 10 O -0.402 6.402 11 N -0.355 5.355 12 C 0.019 3.981 13 H 0.108 0.892 14 C 0.051 3.949 15 N -0.329 5.329 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.017 3.983 25 C -0.091 4.091 26 C -0.183 4.183 27 C -0.188 4.188 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.231 0.769 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.784 7.507 0.362 15.700 hybrid contribution -0.528 -0.991 -0.851 1.408 sum 13.257 6.516 -0.488 14.780 Atomic orbital electron populations 1.21601 0.76915 1.02487 1.03155 1.47882 1.06971 1.05609 1.72600 1.20853 0.89179 0.84211 0.75272 1.90718 1.78811 1.20833 1.50864 1.22345 0.94946 0.97069 1.04869 1.22597 0.94250 0.95494 1.03428 1.21693 0.91654 0.86571 0.99797 0.87907 1.20428 0.81990 0.83091 0.85633 1.90731 1.34136 1.79264 1.36104 1.45998 1.47775 1.07352 1.34378 1.22526 0.95637 0.87564 0.92374 0.89244 1.21510 0.90009 0.86369 0.97033 1.44425 1.00177 1.20506 1.67791 1.18976 0.87576 0.99303 1.30144 0.90522 1.24794 0.96797 0.97652 1.00939 1.69936 1.12685 1.24657 1.49375 0.86232 0.80264 0.80326 0.79100 1.21155 1.21617 1.21240 1.21630 0.86668 0.96902 0.93059 1.22019 0.93892 0.95712 0.97509 1.21591 1.03052 0.99033 0.94647 1.21672 0.95353 1.00705 1.01081 0.91227 0.91052 0.90941 0.87721 0.87481 0.89319 0.88171 0.76865 0.93505 0.92830 0.93610 0.94076 0.96735 0.92799 0.93401 0.91292 0.93023 0.92876 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.44 9.59 59.85 0.57 2.02 16 2 N -0.60 -8.15 3.01 -173.96 -0.52 -8.67 16 3 C 0.52 7.06 8.03 -10.80 -0.09 6.98 16 4 O -0.54 -9.33 17.60 5.55 0.10 -9.23 16 5 C -0.15 -1.29 6.86 -26.74 -0.18 -1.48 16 6 C -0.12 -0.93 6.67 -25.08 -0.17 -1.10 16 7 C 0.11 1.25 3.70 -68.15 -0.25 1.00 16 8 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 9 C 0.51 7.54 6.71 -10.99 -0.07 7.47 16 10 O -0.53 -10.10 14.65 5.55 0.08 -10.02 16 11 N -0.70 -10.10 4.40 -52.02 -0.23 -10.33 16 12 C 0.12 2.16 2.60 -66.09 -0.17 1.99 16 13 H 0.09 1.66 7.45 -51.93 -0.39 1.27 16 14 C 0.18 4.09 4.74 -3.06 -0.01 4.07 16 15 N -0.60 -14.28 3.38 -170.07 -0.57 -14.86 16 16 C -0.23 -6.18 10.28 -15.06 -0.15 -6.34 16 17 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 19 N -0.92 -26.63 10.31 55.49 0.57 -26.06 16 20 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.14 2.64 6.12 -2.53 -0.02 2.63 16 25 C -0.09 -1.36 0.83 -152.37 -0.13 -1.48 16 26 C -0.13 -1.88 8.61 37.16 0.32 -1.56 16 27 C -0.13 -1.46 8.35 37.15 0.31 -1.15 16 28 H 0.07 1.12 7.49 -51.93 -0.39 0.73 16 29 H 0.07 0.97 7.93 -51.93 -0.41 0.55 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.75 7.91 -51.93 -0.41 0.34 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.40 4.70 7.06 -40.82 -0.29 4.41 16 36 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.05 1.44 7.37 -51.93 -0.38 1.05 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 40 H 0.02 0.26 8.04 -51.93 -0.42 -0.15 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 1.24 7.83 -51.93 -0.41 0.84 16 44 H 0.05 0.50 6.28 -51.93 -0.33 0.18 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -34.12 365.03 -7.81 -41.93 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.57 Total: 2.25 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -0.14 Total: 12.80 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.76 Total: -59.92 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.18 Total: -19.25 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.12 -7.81 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974933045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.700 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds