Wall clock time and date at job start Fri Apr 10 2020 18:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46763 * 124.34724 * 2 1 4 4 C 1.54472 * 105.47339 * 162.98243 * 3 2 1 5 5 C 1.54626 * 101.76836 * 25.41472 * 4 3 2 6 6 H 1.09002 * 110.48835 * 216.52487 * 5 4 3 7 7 C 1.50701 * 110.48491 * 94.01076 * 5 4 3 8 8 O 1.21278 * 120.00187 * 1.84795 * 7 5 4 9 9 N 1.34779 * 119.99603 * 181.84422 * 7 5 4 10 10 C 1.46498 * 119.99644 * 180.02562 * 9 7 5 11 11 H 1.09001 * 110.64317 * 31.86179 * 10 9 7 12 12 C 1.54322 * 110.72239 * 268.51989 * 10 9 7 13 13 N 1.47018 * 107.27509 * 263.83297 * 12 10 9 14 14 C 1.36936 * 125.65458 * 181.02200 * 13 12 10 15 15 H 1.07992 * 120.00626 * 180.02562 * 14 13 12 16 16 C 1.38822 * 119.99416 * 0.03948 * 14 13 12 17 17 N 1.31617 * 120.00020 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47169 * 60.00080 * 18 16 14 20 20 H 1.48493 * 109.47235 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47535 * 300.00373 * 18 16 14 22 22 C 1.47431 * 108.70234 * 1.05641 * 13 12 10 23 23 C 1.54913 * 104.82949 * 335.87119 * 22 13 12 24 24 C 1.52994 * 111.00647 * 278.93550 * 23 22 13 25 25 C 1.52999 * 111.03508 * 155.09562 * 23 22 13 26 26 C 1.34418 * 124.35083 * 179.97438 * 2 1 3 27 27 O 1.21276 * 124.93961 * 0.44716 * 26 2 1 28 28 H 1.09004 * 109.46840 * 90.00056 * 1 2 3 29 29 H 1.09000 * 109.47323 * 210.00128 * 1 2 3 30 30 H 1.08996 * 109.47189 * 330.00138 * 1 2 3 31 31 H 1.09004 * 110.24685 * 43.98212 * 3 2 1 32 32 H 1.09001 * 110.24707 * 281.97983 * 3 2 1 33 33 H 1.09006 * 110.97215 * 267.29176 * 4 3 2 34 34 H 1.09003 * 111.00372 * 143.54904 * 4 3 2 35 35 H 0.96995 * 120.00374 * 359.97438 * 9 7 5 36 36 H 1.09001 * 109.87798 * 23.24890 * 12 10 9 37 37 H 1.09000 * 109.88063 * 144.41089 * 12 10 9 38 38 H 0.97000 * 119.99608 * 179.97438 * 17 16 14 39 39 H 1.09004 * 110.36893 * 217.03816 * 22 13 12 40 40 H 1.08991 * 110.36492 * 94.70739 * 22 13 12 41 41 H 1.09002 * 109.47400 * 172.19974 * 24 23 22 42 42 H 1.09006 * 109.47027 * 292.19484 * 24 23 22 43 43 H 1.09002 * 109.47129 * 52.19658 * 24 23 22 44 44 H 1.08995 * 109.47644 * 307.78732 * 25 23 22 45 45 H 1.09007 * 109.47095 * 67.78508 * 25 23 22 46 46 H 1.08997 * 109.47362 * 187.78662 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7009 0.7488 0.4357 5 6 3.6898 -0.7377 0.0102 6 1 4.2327 -1.3458 0.7339 7 6 4.2868 -0.8973 -1.3643 8 8 4.7211 0.0700 -1.9529 9 7 4.3382 -2.1152 -1.9393 10 6 4.9190 -2.2704 -3.2753 11 1 5.7157 -1.5438 -3.4347 12 6 3.8311 -2.1410 -4.3621 13 7 3.4019 -3.5022 -4.7146 14 6 2.4626 -3.8240 -5.6576 15 1 2.2161 -4.8588 -5.8432 16 6 1.8274 -2.8197 -6.3753 17 7 2.1284 -1.5584 -6.1497 18 14 0.5466 -3.2585 -7.6622 19 1 -0.5679 -3.9994 -7.0188 20 1 0.0221 -2.0154 -8.2826 21 1 1.1676 -4.1095 -8.7088 22 6 4.1498 -4.4636 -3.8840 23 6 5.4450 -3.7156 -3.4807 24 6 6.4812 -3.7675 -4.6051 25 6 6.0223 -4.2790 -2.1806 26 6 2.2235 -1.1098 0.0005 27 8 1.7946 -2.2441 -0.0068 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.8983 1.9384 0.7102 32 1 2.3306 1.6429 -1.0004 33 1 3.8268 0.8450 1.5142 34 1 4.4757 1.3010 -0.0961 35 1 3.9912 -2.8889 -1.4684 36 1 2.9848 -1.5744 -3.9738 37 1 4.2419 -1.6427 -5.2402 38 1 1.6849 -0.8567 -6.6515 39 1 4.3914 -5.3562 -4.4613 40 1 3.5731 -4.7284 -2.9979 41 1 7.3226 -3.1218 -4.3540 42 1 6.8332 -4.7918 -4.7278 43 1 6.0259 -3.4260 -5.5348 44 1 5.2464 -4.2950 -1.4153 45 1 6.3837 -5.2929 -2.3527 46 1 6.8482 -3.6505 -1.8474 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974948909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:59 Heat of formation + Delta-G solvation = -38.385256 kcal Electronic energy + Delta-G solvation = -27620.698468 eV Core-core repulsion = 23932.177078 eV Total energy + Delta-G solvation = -3688.521390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.91864 -39.27688 -37.79214 -36.30869 -33.82325 -33.03902 -32.72133 -30.64524 -28.64566 -27.55339 -26.81048 -26.55231 -25.56926 -23.63561 -22.32951 -20.63875 -20.06398 -19.45377 -18.65073 -17.51126 -16.76405 -16.64650 -15.75077 -15.71191 -15.33413 -14.60277 -14.34929 -14.01149 -13.88861 -13.67815 -13.60895 -13.38108 -13.10197 -12.81052 -12.64852 -12.48649 -12.31115 -12.00876 -11.93122 -11.65408 -11.52752 -11.33730 -11.29064 -11.01551 -10.93917 -10.72501 -10.36266 -10.23692 -9.98174 -9.90470 -9.83475 -9.58765 -9.51415 -8.73387 -8.58508 -8.41552 -6.76594 -5.63906 -2.97798 2.38885 2.84355 3.10532 3.44153 3.48082 3.49525 3.55101 4.22103 4.35976 4.54837 4.71953 4.95408 4.99323 5.09921 5.18673 5.31875 5.34237 5.37104 5.43541 5.50026 5.58880 5.68820 5.72884 5.77261 5.86452 5.95533 5.97259 6.07565 6.19891 6.24033 6.29684 6.42990 6.44002 6.62219 6.69240 6.72752 6.77452 7.00433 7.01947 7.59094 7.67422 7.85092 7.94014 8.12511 8.30979 8.54413 9.27572 9.88453 10.54312 11.46927 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.005658 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.470037 B = 4947.747687 C = 6369.071805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.619 5.619 3 C 0.101 3.899 4 C -0.117 4.117 5 C -0.150 4.150 6 H 0.128 0.872 7 C 0.529 3.471 8 O -0.534 6.534 9 N -0.699 5.699 10 C 0.122 3.878 11 H 0.090 0.910 12 C 0.178 3.822 13 N -0.601 5.601 14 C -0.226 4.226 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.911 3.089 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.143 3.857 23 C -0.090 4.090 24 C -0.125 4.125 25 C -0.131 4.131 26 C 0.528 3.472 27 O -0.517 6.517 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.402 0.598 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.252 0.748 39 H 0.041 0.959 40 H 0.017 0.983 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 3.700 15.424 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.354 5.354 3 C -0.022 4.022 4 C -0.155 4.155 5 C -0.175 4.175 6 H 0.146 0.854 7 C 0.313 3.687 8 O -0.412 6.412 9 N -0.349 5.349 10 C 0.017 3.983 11 H 0.108 0.892 12 C 0.052 3.948 13 N -0.328 5.328 14 C -0.355 4.355 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.741 3.259 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.016 3.984 23 C -0.091 4.091 24 C -0.182 4.182 25 C -0.189 4.189 26 C 0.314 3.686 27 O -0.393 6.393 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.238 0.762 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.767 3.907 14.810 16.041 hybrid contribution -1.078 -0.494 -0.464 1.274 sum 3.689 3.413 14.346 15.200 Atomic orbital electron populations 1.21564 0.77635 1.02803 1.02490 1.48059 1.06709 1.07298 1.73314 1.22167 0.90187 0.87132 1.02668 1.22572 0.97895 0.92995 1.02023 1.22162 0.95932 1.00894 0.98473 0.85405 1.19558 0.79329 0.83696 0.86122 1.90686 1.48194 1.38358 1.63921 1.46003 1.60844 1.09199 1.18893 1.22543 0.97327 0.96199 0.82189 0.89179 1.21483 0.93200 0.87048 0.93034 1.44404 1.45179 1.00654 1.42538 1.18985 1.12852 0.92546 1.11102 0.90553 1.24794 1.00196 0.95345 1.00104 1.69955 1.45024 0.98142 1.43626 0.86220 0.81431 0.76830 0.81397 1.21297 1.21690 1.21203 1.21648 0.89647 0.93067 0.94001 1.22017 0.96470 0.95177 0.95480 1.21592 0.97051 1.00915 0.98686 1.21678 1.00236 1.00433 0.96544 1.20269 0.87894 0.84673 0.75762 1.90760 1.78049 1.20774 1.49671 0.92122 0.90634 0.91051 0.90178 0.90279 0.89544 0.87154 0.76234 0.93660 0.92839 0.93792 0.94080 0.96539 0.93365 0.92886 0.91210 0.92962 0.92635 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 10.96 59.85 0.66 1.77 16 2 N -0.62 -8.34 3.33 -180.29 -0.60 -8.95 16 3 C 0.10 1.08 7.35 -3.13 -0.02 1.06 16 4 C -0.12 -1.18 6.51 -25.10 -0.16 -1.35 16 5 C -0.15 -1.98 3.32 -91.78 -0.30 -2.28 16 6 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 7 C 0.53 9.07 7.18 -10.98 -0.08 8.99 16 8 O -0.53 -10.52 15.11 5.56 0.08 -10.44 16 9 N -0.70 -12.48 4.41 -52.03 -0.23 -12.71 16 10 C 0.12 2.41 2.59 -66.09 -0.17 2.23 16 11 H 0.09 1.80 7.45 -51.93 -0.39 1.41 16 12 C 0.18 4.50 4.79 -3.07 -0.01 4.49 16 13 N -0.60 -15.57 3.38 -170.07 -0.57 -16.14 16 14 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 17 N -0.92 -27.90 10.31 55.49 0.57 -27.33 16 18 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.14 2.98 6.12 -2.52 -0.02 2.97 16 23 C -0.09 -1.56 0.83 -152.36 -0.13 -1.68 16 24 C -0.12 -2.04 8.57 37.15 0.32 -1.72 16 25 C -0.13 -1.80 8.22 37.16 0.31 -1.49 16 26 C 0.53 8.36 7.30 -10.86 -0.08 8.28 16 27 O -0.52 -9.94 17.58 5.56 0.10 -9.84 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.11 1.20 6.93 -51.93 -0.36 0.84 16 35 H 0.40 6.93 7.10 -40.82 -0.29 6.64 16 36 H 0.05 1.33 7.41 -51.93 -0.38 0.94 16 37 H 0.05 1.51 7.38 -51.93 -0.38 1.13 16 38 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 40 H 0.02 0.36 7.99 -51.93 -0.41 -0.06 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 44 H 0.05 0.70 6.48 -51.93 -0.34 0.36 16 45 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -34.96 366.70 -7.67 -42.62 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.57 Total: 5.19 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 0.05 Total: 14.33 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.83 Total: -65.13 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.18 Total: -20.28 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.96 -7.67 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974948909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.239 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds