Wall clock time and date at job start Fri Apr 10 2020 18:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46762 * 124.35259 * 2 1 4 4 C 1.54479 * 105.47504 * 197.03511 * 3 2 1 5 5 C 1.54626 * 101.76546 * 334.58044 * 4 3 2 6 6 H 1.08997 * 110.60160 * 266.06961 * 5 4 3 7 7 C 1.50695 * 110.48824 * 143.47245 * 5 4 3 8 8 O 1.21281 * 120.00072 * 3.78103 * 7 5 4 9 9 N 1.34782 * 120.00475 * 183.77403 * 7 5 4 10 10 C 1.46496 * 120.00326 * 180.02562 * 9 7 5 11 11 H 1.09002 * 110.63746 * 328.14027 * 10 9 7 12 12 C 1.54325 * 110.87283 * 91.38814 * 10 9 7 13 13 N 1.47290 * 107.30599 * 96.25220 * 12 10 9 14 14 C 1.36938 * 125.79079 * 178.92205 * 13 12 10 15 15 H 1.08005 * 119.99558 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00146 * 0.02562 * 14 13 12 17 17 N 1.31620 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99779 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47268 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47204 * 119.99715 * 18 16 14 21 21 H 1.48508 * 109.46889 * 239.99519 * 18 16 14 22 22 C 1.47425 * 108.55742 * 358.92448 * 13 12 10 23 23 C 1.54908 * 104.92961 * 24.15407 * 22 13 12 24 24 C 1.53007 * 111.00481 * 81.01010 * 23 22 13 25 25 C 1.52999 * 111.00707 * 204.82088 * 23 22 13 26 26 C 1.34419 * 124.35027 * 180.02562 * 2 1 3 27 27 O 1.21284 * 124.94211 * 359.61522 * 26 2 1 28 28 H 1.08999 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47171 * 299.95673 * 1 2 3 30 30 H 1.08995 * 109.46667 * 59.95285 * 1 2 3 31 31 H 1.08994 * 110.24488 * 316.03546 * 3 2 1 32 32 H 1.09001 * 110.24873 * 78.03460 * 3 2 1 33 33 H 1.09000 * 110.96980 * 216.46374 * 4 3 2 34 34 H 1.08997 * 110.96834 * 92.69891 * 4 3 2 35 35 H 0.97000 * 119.99814 * 0.02562 * 9 7 5 36 36 H 1.09004 * 109.88239 * 215.66016 * 12 10 9 37 37 H 1.08999 * 109.88411 * 336.82447 * 12 10 9 38 38 H 0.96999 * 120.00175 * 180.02562 * 17 16 14 39 39 H 1.09002 * 110.36696 * 265.26054 * 22 13 12 40 40 H 1.08995 * 110.36608 * 143.04891 * 22 13 12 41 41 H 1.09001 * 109.46742 * 61.44802 * 24 23 22 42 42 H 1.08996 * 109.47279 * 181.45530 * 24 23 22 43 43 H 1.09002 * 109.47053 * 301.45273 * 24 23 22 44 44 H 1.09009 * 109.46588 * 58.54618 * 25 23 22 45 45 H 1.08994 * 109.47505 * 178.54807 * 25 23 22 46 46 H 1.09001 * 109.47019 * 298.55300 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7009 0.7487 -0.4362 5 6 3.6898 -0.7379 -0.0108 6 1 4.1202 -0.8554 0.9837 7 6 4.4400 -1.5785 -1.0116 8 8 5.0033 -1.0498 -1.9465 9 7 4.4850 -2.9179 -0.8677 10 6 5.2147 -3.7350 -1.8403 11 1 5.1746 -3.2809 -2.8305 12 6 6.6772 -3.9451 -1.3948 13 7 6.7425 -5.2447 -0.7046 14 6 7.8693 -5.8138 -0.1738 15 1 7.8099 -6.7755 0.3140 16 6 9.0877 -5.1546 -0.2628 17 7 9.1601 -3.9828 -0.8578 18 14 10.6248 -5.9314 0.4607 19 1 10.2781 -7.2407 1.0696 20 1 11.6292 -6.1352 -0.6140 21 1 11.1889 -5.0354 1.5021 22 6 5.3904 -5.8316 -0.6805 23 6 4.6511 -5.1801 -1.8758 24 6 5.0114 -5.8771 -3.1894 25 6 3.1374 -5.1850 -1.6531 26 6 2.2235 -1.1098 -0.0005 27 8 1.7946 -2.2442 0.0057 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5132 0.8904 30 1 -0.3632 0.5146 -0.8895 31 1 1.8983 1.9383 -0.7099 32 1 2.3310 1.6427 1.0004 33 1 4.4755 1.3009 0.0961 34 1 3.8265 0.8449 -1.5146 35 1 4.0342 -3.3407 -0.1202 36 1 7.3323 -3.9551 -2.2659 37 1 6.9753 -3.1483 -0.7134 38 1 10.0115 -3.5224 -0.9203 39 1 4.8875 -5.5875 0.2552 40 1 5.4437 -6.9124 -0.8110 41 1 4.7034 -6.9217 -3.1427 42 1 4.4988 -5.3836 -4.0151 43 1 6.0887 -5.8227 -3.3460 44 1 2.9036 -4.6463 -0.7347 45 1 2.6447 -4.6989 -2.4950 46 1 2.7857 -6.2134 -1.5706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974948913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:06 Heat of formation + Delta-G solvation = -38.675553 kcal Electronic energy + Delta-G solvation = -27302.363477 eV Core-core repulsion = 23613.829499 eV Total energy + Delta-G solvation = -3688.533978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.97315 -39.28814 -37.75371 -36.53589 -33.77958 -33.05975 -32.74817 -30.61797 -28.71061 -27.59814 -26.97457 -26.50533 -25.53246 -23.57724 -22.30326 -20.74475 -20.01550 -19.51904 -18.57602 -17.33300 -16.95603 -16.63907 -16.30943 -15.66261 -15.26424 -14.70541 -14.22141 -14.07776 -13.93121 -13.80458 -13.65065 -13.30349 -13.11777 -13.02011 -12.69756 -12.36630 -12.34888 -11.97250 -11.95658 -11.83703 -11.54839 -11.29709 -11.23058 -10.96520 -10.93075 -10.74710 -10.29284 -10.15816 -10.00361 -9.91281 -9.78926 -9.56870 -9.50061 -8.98349 -8.59169 -8.34262 -6.76675 -5.64620 -2.98621 2.29960 2.67163 3.05147 3.43000 3.48414 3.51048 3.59399 4.11273 4.28139 4.54393 4.74048 4.76577 5.01052 5.04295 5.07311 5.13561 5.28520 5.34025 5.41901 5.44231 5.45548 5.61475 5.70392 5.72396 5.94053 5.95513 6.07398 6.17825 6.21721 6.26430 6.30669 6.46083 6.50401 6.68151 6.71879 6.77392 6.79493 6.85275 7.05803 7.60780 7.68825 7.86690 7.93001 8.02163 8.30195 8.62788 9.26859 9.87774 10.54443 11.46462 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.004116 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.492990 B = 6801.043850 C = 7625.919348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.623 5.623 3 C 0.102 3.898 4 C -0.115 4.115 5 C -0.150 4.150 6 H 0.135 0.865 7 C 0.530 3.470 8 O -0.538 6.538 9 N -0.694 5.694 10 C 0.123 3.877 11 H 0.088 0.912 12 C 0.176 3.824 13 N -0.603 5.603 14 C -0.226 4.226 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.910 3.090 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.143 3.857 23 C -0.089 4.089 24 C -0.124 4.124 25 C -0.130 4.130 26 C 0.528 3.472 27 O -0.516 6.516 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.402 0.598 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.251 0.749 39 H 0.016 0.984 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.335 9.657 1.258 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.359 5.359 3 C -0.021 4.021 4 C -0.153 4.153 5 C -0.175 4.175 6 H 0.152 0.848 7 C 0.313 3.687 8 O -0.416 6.416 9 N -0.344 5.344 10 C 0.018 3.982 11 H 0.106 0.894 12 C 0.051 3.949 13 N -0.330 5.330 14 C -0.354 4.354 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.567 5.567 18 Si 0.741 3.259 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.219 1.219 22 C 0.017 3.983 23 C -0.091 4.091 24 C -0.182 4.182 25 C -0.188 4.188 26 C 0.315 3.685 27 O -0.391 6.391 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.239 0.761 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.013 9.451 0.613 19.472 hybrid contribution 0.662 -0.407 0.919 1.204 sum -16.351 9.045 1.533 18.749 Atomic orbital electron populations 1.21564 0.77825 1.03897 1.01442 1.48077 1.06568 1.07362 1.73852 1.22182 0.90670 0.87269 1.01991 1.22582 0.95948 0.92071 1.04737 1.22192 0.94573 0.97898 1.02829 0.84788 1.19536 0.80716 0.82850 0.85573 1.90693 1.46194 1.72167 1.32542 1.45966 1.52975 1.05792 1.29650 1.22486 0.94277 0.89329 0.92105 0.89428 1.21555 0.88286 0.88141 0.96945 1.44514 1.02547 1.18993 1.66935 1.19085 0.84952 1.01643 1.29761 0.90437 1.24795 0.97621 0.97001 1.01045 1.69974 1.24175 1.14656 1.47889 0.86072 0.83426 0.78173 0.78250 1.20592 1.21825 1.21891 1.21631 0.86810 0.96281 0.93567 1.22011 0.94714 0.94966 0.97376 1.21591 1.02597 0.99143 0.94882 1.21669 0.94370 1.01003 1.01757 1.20413 0.88109 0.84646 0.75353 1.90740 1.78064 1.20641 1.49683 0.89801 0.92034 0.92033 0.90030 0.90795 0.88439 0.88029 0.76116 0.92807 0.93455 0.93829 0.96635 0.94146 0.92877 0.93487 0.91363 0.92114 0.93202 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.14 59.85 0.67 1.38 16 2 N -0.62 -6.22 3.33 -180.29 -0.60 -6.82 16 3 C 0.10 0.75 7.35 -3.12 -0.02 0.73 16 4 C -0.12 -1.14 6.45 -25.10 -0.16 -1.30 16 5 C -0.15 -1.94 3.33 -91.79 -0.31 -2.25 16 6 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 7 C 0.53 9.31 7.16 -10.99 -0.08 9.23 16 8 O -0.54 -11.06 15.17 5.56 0.08 -10.98 16 9 N -0.69 -12.66 4.13 -52.03 -0.21 -12.88 16 10 C 0.12 2.49 2.59 -66.10 -0.17 2.32 16 11 H 0.09 1.84 7.45 -51.93 -0.39 1.45 16 12 C 0.18 4.42 4.75 -2.92 -0.01 4.41 16 13 N -0.60 -15.46 3.39 -169.85 -0.58 -16.03 16 14 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 15 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 17 N -0.92 -27.55 10.34 55.49 0.57 -26.98 16 18 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 22 C 0.14 3.01 6.12 -2.53 -0.02 2.99 16 23 C -0.09 -1.62 0.83 -152.36 -0.13 -1.74 16 24 C -0.12 -2.13 8.61 37.16 0.32 -1.81 16 25 C -0.13 -2.03 8.35 37.16 0.31 -1.72 16 26 C 0.53 6.99 7.44 -10.86 -0.08 6.91 16 27 O -0.52 -8.26 16.17 5.55 0.09 -8.17 16 28 H 0.08 0.74 7.53 -51.93 -0.39 0.35 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.19 7.06 -51.93 -0.37 0.82 16 35 H 0.40 7.03 6.26 -40.82 -0.26 6.77 16 36 H 0.05 1.52 7.39 -51.93 -0.38 1.13 16 37 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.02 0.33 8.04 -51.93 -0.42 -0.09 16 40 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.34 7.81 -51.93 -0.41 0.94 16 44 H 0.06 0.98 6.27 -51.92 -0.33 0.65 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -34.20 364.11 -7.62 -41.82 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.51 Total: 4.85 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 0.07 Total: 12.31 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.82 Total: -62.71 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.17 Total: -19.15 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.20 -7.62 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974948913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.140 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds