Wall clock time and date at job start Fri Apr 10 2020 18:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46762 * 124.35259 * 2 1 4 4 C 1.54479 * 105.47504 * 197.03511 * 3 2 1 5 5 C 1.54626 * 101.76546 * 334.58044 * 4 3 2 6 6 H 1.08997 * 110.60160 * 266.06961 * 5 4 3 7 7 C 1.50695 * 110.48824 * 143.47245 * 5 4 3 8 8 O 1.21281 * 120.00072 * 3.78103 * 7 5 4 9 9 N 1.34782 * 120.00475 * 183.77403 * 7 5 4 10 10 C 1.46496 * 120.00326 * 180.02562 * 9 7 5 11 11 H 1.09002 * 110.63746 * 328.14027 * 10 9 7 12 12 C 1.54325 * 110.87283 * 91.38814 * 10 9 7 13 13 N 1.47290 * 107.30599 * 96.25220 * 12 10 9 14 14 C 1.36938 * 125.79079 * 178.92205 * 13 12 10 15 15 H 1.08005 * 119.99558 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00146 * 0.02562 * 14 13 12 17 17 N 1.31620 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99779 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47268 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47204 * 119.99715 * 18 16 14 21 21 H 1.48508 * 109.46889 * 239.99519 * 18 16 14 22 22 C 1.47425 * 108.55742 * 358.92448 * 13 12 10 23 23 C 1.54908 * 104.92961 * 24.15407 * 22 13 12 24 24 C 1.53007 * 111.00481 * 81.01010 * 23 22 13 25 25 C 1.52999 * 111.00707 * 204.82088 * 23 22 13 26 26 C 1.34419 * 124.35027 * 180.02562 * 2 1 3 27 27 O 1.21284 * 124.94211 * 359.61522 * 26 2 1 28 28 H 1.08999 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47171 * 299.95673 * 1 2 3 30 30 H 1.08995 * 109.46667 * 59.95285 * 1 2 3 31 31 H 1.08994 * 110.24488 * 316.03546 * 3 2 1 32 32 H 1.09001 * 110.24873 * 78.03460 * 3 2 1 33 33 H 1.09000 * 110.96980 * 216.46374 * 4 3 2 34 34 H 1.08997 * 110.96834 * 92.69891 * 4 3 2 35 35 H 0.97000 * 119.99814 * 0.02562 * 9 7 5 36 36 H 1.09004 * 109.88239 * 215.66016 * 12 10 9 37 37 H 1.08999 * 109.88411 * 336.82447 * 12 10 9 38 38 H 0.96999 * 120.00175 * 180.02562 * 17 16 14 39 39 H 1.09002 * 110.36696 * 265.26054 * 22 13 12 40 40 H 1.08995 * 110.36608 * 143.04891 * 22 13 12 41 41 H 1.09001 * 109.46742 * 61.44802 * 24 23 22 42 42 H 1.08996 * 109.47279 * 181.45530 * 24 23 22 43 43 H 1.09002 * 109.47053 * 301.45273 * 24 23 22 44 44 H 1.09009 * 109.46588 * 58.54618 * 25 23 22 45 45 H 1.08994 * 109.47505 * 178.54807 * 25 23 22 46 46 H 1.09001 * 109.47019 * 298.55300 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7009 0.7487 -0.4362 5 6 3.6898 -0.7379 -0.0108 6 1 4.1202 -0.8554 0.9837 7 6 4.4400 -1.5785 -1.0116 8 8 5.0033 -1.0498 -1.9465 9 7 4.4850 -2.9179 -0.8677 10 6 5.2147 -3.7350 -1.8403 11 1 5.1746 -3.2809 -2.8305 12 6 6.6772 -3.9451 -1.3948 13 7 6.7425 -5.2447 -0.7046 14 6 7.8693 -5.8138 -0.1738 15 1 7.8099 -6.7755 0.3140 16 6 9.0877 -5.1546 -0.2628 17 7 9.1601 -3.9828 -0.8578 18 14 10.6248 -5.9314 0.4607 19 1 10.2781 -7.2407 1.0696 20 1 11.6292 -6.1352 -0.6140 21 1 11.1889 -5.0354 1.5021 22 6 5.3904 -5.8316 -0.6805 23 6 4.6511 -5.1801 -1.8758 24 6 5.0114 -5.8771 -3.1894 25 6 3.1374 -5.1850 -1.6531 26 6 2.2235 -1.1098 -0.0005 27 8 1.7946 -2.2442 0.0057 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5132 0.8904 30 1 -0.3632 0.5146 -0.8895 31 1 1.8983 1.9383 -0.7099 32 1 2.3310 1.6427 1.0004 33 1 4.4755 1.3009 0.0961 34 1 3.8265 0.8449 -1.5146 35 1 4.0342 -3.3407 -0.1202 36 1 7.3323 -3.9551 -2.2659 37 1 6.9753 -3.1483 -0.7134 38 1 10.0115 -3.5224 -0.9203 39 1 4.8875 -5.5875 0.2552 40 1 5.4437 -6.9124 -0.8110 41 1 4.7034 -6.9217 -3.1427 42 1 4.4988 -5.3836 -4.0151 43 1 6.0887 -5.8227 -3.3460 44 1 2.9036 -4.6463 -0.7347 45 1 2.6447 -4.6989 -2.4950 46 1 2.7857 -6.2134 -1.5706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974948913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:05 Heat of formation + Delta-G solvation = -62.587794 kcal Electronic energy + Delta-G solvation = -27303.400390 eV Core-core repulsion = 23613.829499 eV Total energy + Delta-G solvation = -3689.570890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05613 -40.73193 -39.27890 -37.48734 -35.67725 -34.51636 -33.75424 -32.60962 -30.13903 -28.86041 -27.97639 -27.67370 -27.36840 -25.25000 -23.46477 -22.15513 -21.60129 -20.71240 -20.06130 -18.68853 -18.46963 -17.87580 -17.45818 -17.17045 -16.59551 -16.24557 -15.72593 -15.50982 -15.36752 -15.16794 -14.80477 -14.70275 -14.45012 -13.93873 -13.83605 -13.71909 -13.48646 -13.38662 -13.17732 -13.11351 -12.98906 -12.86955 -12.71484 -12.66536 -12.58623 -12.06647 -12.02943 -11.86107 -11.75242 -11.54441 -11.34792 -11.11580 -10.88665 -10.73463 -9.97977 -9.72463 -8.89448 -7.83110 -5.19877 1.24654 1.45095 1.46331 1.56707 1.57121 2.01298 2.29931 2.49705 3.20137 3.34444 3.36401 3.48562 3.69590 3.81994 3.94506 3.95277 4.05191 4.17814 4.38014 4.39681 4.43231 4.50627 4.65683 4.68330 4.72810 4.81739 4.85497 4.90218 4.92786 4.99422 5.01814 5.13285 5.14043 5.16561 5.28771 5.31947 5.45664 5.50231 5.54904 5.69997 5.73410 5.96401 6.17071 6.52904 7.00793 7.08017 7.19903 7.76653 8.42609 9.26813 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.004116 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.492990 B = 6801.043850 C = 7625.919348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.618 5.618 3 C 0.106 3.894 4 C -0.113 4.113 5 C -0.148 4.148 6 H 0.150 0.850 7 C 0.522 3.478 8 O -0.574 6.574 9 N -0.692 5.692 10 C 0.135 3.865 11 H 0.078 0.922 12 C 0.196 3.804 13 N -0.620 5.620 14 C -0.237 4.237 15 H 0.086 0.914 16 C -0.068 4.068 17 N -0.953 5.953 18 Si 0.979 3.021 19 H -0.263 1.263 20 H -0.294 1.294 21 H -0.294 1.294 22 C 0.140 3.860 23 C -0.076 4.076 24 C -0.121 4.121 25 C -0.119 4.119 26 C 0.521 3.479 27 O -0.552 6.552 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.408 0.592 36 H 0.010 0.990 37 H 0.004 0.996 38 H 0.244 0.756 39 H 0.024 0.976 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.033 0.967 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.657 9.923 2.314 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.351 5.351 3 C -0.015 4.015 4 C -0.151 4.151 5 C -0.172 4.172 6 H 0.167 0.833 7 C 0.308 3.692 8 O -0.454 6.454 9 N -0.342 5.342 10 C 0.029 3.971 11 H 0.096 0.904 12 C 0.070 3.930 13 N -0.346 5.346 14 C -0.366 4.366 15 H 0.104 0.896 16 C -0.260 4.260 17 N -0.602 5.602 18 Si 0.808 3.192 19 H -0.187 1.187 20 H -0.221 1.221 21 H -0.221 1.221 22 C 0.015 3.985 23 C -0.078 4.078 24 C -0.178 4.178 25 C -0.176 4.176 26 C 0.307 3.693 27 O -0.430 6.430 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.245 0.755 36 H 0.028 0.972 37 H 0.022 0.978 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.399 9.732 1.693 21.769 hybrid contribution 1.358 -0.449 0.584 1.545 sum -18.041 9.283 2.277 20.416 Atomic orbital electron populations 1.21771 0.76162 1.03552 1.03634 1.48242 1.07694 1.07173 1.72009 1.22393 0.88328 0.86460 1.04358 1.22632 0.98638 0.90120 1.03718 1.22236 0.94313 0.98752 1.01939 0.83287 1.20404 0.80190 0.82719 0.85916 1.90670 1.47712 1.72712 1.34344 1.45914 1.52619 1.06248 1.29449 1.22104 0.91815 0.91329 0.91890 0.90433 1.21120 0.90806 0.87037 0.94072 1.44746 1.03946 1.19313 1.66595 1.19518 0.85986 1.01910 1.29221 0.89606 1.25664 1.00802 0.97602 1.01964 1.70228 1.24279 1.16198 1.49498 0.84996 0.79267 0.77858 0.77121 1.18723 1.22124 1.22118 1.21830 0.84853 0.96745 0.95071 1.21982 0.96357 0.92615 0.96798 1.21571 1.00588 1.00738 0.94939 1.21576 0.91658 1.02579 1.01819 1.20425 0.88268 0.84981 0.75639 1.90709 1.78487 1.22081 1.51761 0.91461 0.89425 0.90185 0.87569 0.87789 0.86559 0.90125 0.75465 0.97203 0.97762 0.94643 0.95820 0.93224 0.90552 0.91529 0.94753 0.92553 0.92492 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 11.14 127.77 1.42 2.52 16 2 N -0.62 -10.70 3.33 -842.91 -2.81 -13.51 16 3 C 0.11 1.20 7.35 86.83 0.64 1.83 16 4 C -0.11 -2.06 6.45 31.65 0.20 -1.85 16 5 C -0.15 -3.73 3.33 -11.55 -0.04 -3.77 16 6 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 7 C 0.52 18.83 7.16 87.65 0.63 19.46 16 8 O -0.57 -24.65 15.17 -3.03 -0.05 -24.69 16 9 N -0.69 -25.88 4.13 -436.92 -1.80 -27.68 16 10 C 0.13 5.65 2.59 46.18 0.12 5.77 16 11 H 0.08 3.41 7.45 -2.39 -0.02 3.40 16 12 C 0.20 10.43 4.75 86.68 0.41 10.84 16 13 N -0.62 -32.67 3.39 -691.30 -2.34 -35.02 16 14 C -0.24 -13.58 10.28 84.03 0.86 -12.72 16 15 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 16 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 17 N -0.95 -59.94 10.34 21.65 0.22 -59.71 16 18 Si 0.98 47.04 29.55 68.60 2.03 49.06 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 22 C 0.14 5.81 6.12 86.85 0.53 6.34 16 23 C -0.08 -2.72 0.83 -50.79 -0.04 -2.76 16 24 C -0.12 -4.04 8.61 71.98 0.62 -3.42 16 25 C -0.12 -3.45 8.35 71.98 0.60 -2.85 16 26 C 0.52 13.16 7.44 87.90 0.65 13.81 16 27 O -0.55 -17.31 16.17 -3.04 -0.05 -17.36 16 28 H 0.07 1.08 7.53 -2.39 -0.02 1.06 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.85 7.06 -2.39 -0.02 1.83 16 35 H 0.41 14.36 6.26 -92.71 -0.58 13.78 16 36 H 0.01 0.60 7.39 -2.38 -0.02 0.58 16 37 H 0.00 0.26 7.42 -2.39 -0.02 0.24 16 38 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.02 0.97 8.04 -2.39 -0.02 0.95 16 40 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.03 1.37 7.81 -2.39 -0.02 1.35 16 44 H 0.06 1.71 6.27 -2.38 -0.01 1.70 16 45 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -79.00 364.11 2.67 -76.33 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.39 Total: 22.88 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 7.08 Total: 29.71 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -6.73 Total: -135.93 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.10 Total: -42.05 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -79.00 2.67 -76.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974948913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.740 kcal (2) G-P(sol) polarization free energy of solvation -78.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds