Wall clock time and date at job start Fri Apr 10 2020 18:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46767 * 124.34581 * 2 1 4 4 C 1.54835 * 105.49119 * 197.05438 * 3 2 1 5 5 C 1.54632 * 101.60418 * 334.56825 * 4 3 2 6 6 H 1.09001 * 110.48468 * 143.57108 * 5 4 3 7 7 C 1.50698 * 110.48333 * 266.08164 * 5 4 3 8 8 O 1.21276 * 120.00324 * 358.15693 * 7 5 4 9 9 N 1.34779 * 119.99534 * 178.16278 * 7 5 4 10 10 C 1.46509 * 119.99762 * 179.97438 * 9 7 5 11 11 H 1.09004 * 110.88537 * 31.11705 * 10 9 7 12 12 C 1.55122 * 111.19006 * 267.18417 * 10 9 7 13 13 N 1.47425 * 104.72620 * 279.18821 * 12 10 9 14 14 C 1.36934 * 125.64935 * 155.81410 * 13 12 10 15 15 H 1.08002 * 119.99686 * 189.80166 * 14 13 12 16 16 C 1.38804 * 120.00070 * 9.53495 * 14 13 12 17 17 N 1.31620 * 120.00406 * 9.87362 * 16 14 13 18 18 Si 1.86799 * 120.00161 * 189.87496 * 16 14 13 19 19 H 1.48502 * 109.47270 * 94.12759 * 18 16 14 20 20 H 1.48496 * 109.47727 * 214.12668 * 18 16 14 21 21 H 1.48500 * 109.47334 * 334.13189 * 18 16 14 22 22 C 1.47020 * 108.69873 * 335.55721 * 13 12 10 23 23 C 1.54319 * 107.27483 * 1.28524 * 22 13 12 24 24 C 1.52999 * 110.72489 * 140.55852 * 23 22 13 25 25 C 1.53001 * 110.71754 * 263.65465 * 23 22 13 26 26 C 1.34415 * 124.35309 * 180.02562 * 2 1 3 27 27 O 1.21285 * 124.93901 * 359.54513 * 26 2 1 28 28 H 1.08998 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47227 * 300.00599 * 1 2 3 30 30 H 1.09005 * 109.47094 * 60.00124 * 1 2 3 31 31 H 1.09000 * 110.24765 * 316.03396 * 3 2 1 32 32 H 1.08999 * 110.24743 * 77.95154 * 3 2 1 33 33 H 1.08998 * 111.08073 * 216.49032 * 4 3 2 34 34 H 1.08998 * 111.01425 * 92.61734 * 4 3 2 35 35 H 0.96999 * 120.00432 * 359.97438 * 9 7 5 36 36 H 1.09001 * 110.49915 * 160.34996 * 12 10 9 37 37 H 1.08996 * 110.34738 * 37.95487 * 12 10 9 38 38 H 0.97000 * 120.00544 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.88231 * 120.70045 * 22 13 12 40 40 H 1.09004 * 109.88149 * 241.86211 * 22 13 12 41 41 H 1.08997 * 109.47411 * 61.44969 * 24 23 22 42 42 H 1.08997 * 109.47073 * 181.45557 * 24 23 22 43 43 H 1.09007 * 109.46772 * 301.45057 * 24 23 22 44 44 H 1.08996 * 109.47456 * 58.54759 * 25 23 22 45 45 H 1.09007 * 109.47303 * 178.54628 * 25 23 22 46 46 H 1.08996 * 109.46978 * 298.53952 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7042 0.7484 -0.4376 5 6 3.6898 -0.7378 -0.0108 6 1 4.2329 -1.3473 -0.7330 7 6 4.2841 -0.8971 1.3648 8 8 4.7190 0.0700 1.9534 9 7 4.3326 -2.1146 1.9410 10 6 4.9109 -2.2697 3.2782 11 1 4.7533 -1.3721 3.8762 12 6 6.4187 -2.6256 3.1991 13 7 6.4480 -4.0755 2.9341 14 6 7.4746 -4.7570 2.3366 15 1 7.3399 -5.7875 2.0430 16 6 8.6864 -4.1216 2.1034 17 7 8.9190 -2.9358 2.6250 18 14 9.9874 -4.9494 1.0490 19 1 9.8565 -4.4838 -0.3551 20 1 11.3364 -4.6005 1.5623 21 1 9.8035 -6.4220 1.1012 22 6 5.1952 -4.6696 3.4231 23 6 4.3349 -3.5214 3.9914 24 6 2.8612 -3.7196 3.6311 25 6 4.5097 -3.4135 5.5076 26 6 2.2235 -1.1097 -0.0005 27 8 1.7947 -2.2442 0.0069 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8982 1.9385 -0.7100 32 1 2.3296 1.6437 1.0001 33 1 4.4801 1.2994 0.0939 34 1 3.8297 0.8433 -1.5162 35 1 3.9845 -2.8881 1.4705 36 1 6.9135 -2.4028 4.1444 37 1 6.8943 -2.0812 2.3834 38 1 9.7657 -2.4916 2.4617 39 1 4.6693 -5.1548 2.6008 40 1 5.4104 -5.3950 4.2076 41 1 2.5019 -4.6505 4.0697 42 1 2.2769 -2.8856 4.0196 43 1 2.7550 -3.7640 2.5472 44 1 5.5606 -3.2429 5.7410 45 1 3.9142 -2.5815 5.8837 46 1 4.1785 -4.3392 5.9782 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974948922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:19 Heat of formation + Delta-G solvation = -40.673283 kcal Electronic energy + Delta-G solvation = -27504.491211 eV Core-core repulsion = 23815.870605 eV Total energy + Delta-G solvation = -3688.620606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.98798 -39.29698 -37.82100 -36.41813 -33.78782 -33.09130 -32.79670 -30.69332 -28.66425 -27.64883 -26.93754 -26.54709 -25.57919 -23.60946 -22.37077 -20.73991 -20.05625 -19.51423 -18.64902 -17.51579 -16.88053 -16.63381 -15.89673 -15.74050 -15.44078 -14.69916 -14.23102 -14.05333 -13.90654 -13.77946 -13.63811 -13.36531 -13.12338 -12.95624 -12.76380 -12.57220 -12.40974 -12.08834 -11.88593 -11.78058 -11.52401 -11.39088 -11.26970 -11.18755 -10.86980 -10.73600 -10.35565 -10.16994 -10.04354 -9.95202 -9.85568 -9.67316 -9.51688 -8.91352 -8.56613 -8.41017 -6.75646 -5.70609 -3.03565 2.31042 2.71595 3.01230 3.41505 3.47116 3.49091 3.59486 4.17531 4.31995 4.51984 4.69863 4.91443 5.01600 5.06155 5.07179 5.19880 5.30359 5.34319 5.36114 5.47619 5.48763 5.54543 5.66460 5.75540 5.85394 5.94896 5.95483 6.08328 6.14906 6.22019 6.27554 6.37309 6.43679 6.55343 6.63800 6.74427 6.78658 6.84759 7.01978 7.53174 7.58496 7.81337 7.92876 7.99845 8.29527 8.57617 9.22171 9.84564 10.51941 11.41745 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.004710 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.874691 B = 5943.858373 C = 6820.423909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.622 5.622 3 C 0.103 3.897 4 C -0.117 4.117 5 C -0.151 4.151 6 H 0.132 0.868 7 C 0.531 3.469 8 O -0.538 6.538 9 N -0.692 5.692 10 C 0.120 3.880 11 H 0.089 0.911 12 C 0.170 3.830 13 N -0.600 5.600 14 C -0.229 4.229 15 H 0.076 0.924 16 C -0.005 4.005 17 N -0.916 5.916 18 Si 0.909 3.091 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.142 3.858 23 C -0.086 4.086 24 C -0.131 4.131 25 C -0.128 4.128 26 C 0.530 3.470 27 O -0.521 6.521 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.404 0.596 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.253 0.747 39 H 0.023 0.977 40 H 0.025 0.975 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.363 7.999 -3.773 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.357 5.357 3 C -0.020 4.020 4 C -0.155 4.155 5 C -0.176 4.176 6 H 0.150 0.850 7 C 0.314 3.686 8 O -0.416 6.416 9 N -0.342 5.342 10 C 0.015 3.985 11 H 0.107 0.893 12 C 0.044 3.956 13 N -0.326 5.326 14 C -0.357 4.357 15 H 0.093 0.907 16 C -0.202 4.202 17 N -0.563 5.563 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.016 3.984 23 C -0.087 4.087 24 C -0.189 4.189 25 C -0.186 4.186 26 C 0.317 3.683 27 O -0.396 6.396 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.240 0.760 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.149 8.098 -3.383 18.380 hybrid contribution 0.621 -0.785 -0.836 1.304 sum -15.528 7.314 -4.219 17.675 Atomic orbital electron populations 1.21563 0.77876 1.03824 1.01480 1.48111 1.06578 1.07474 1.73493 1.22213 0.90364 0.86985 1.02455 1.22643 0.97534 0.93023 1.02329 1.22179 0.95469 1.01043 0.98898 0.84979 1.19506 0.79255 0.83696 0.86103 1.90673 1.48328 1.38810 1.63742 1.45828 1.60434 1.09064 1.18825 1.22624 0.97001 0.97074 0.81791 0.89299 1.21807 0.88006 0.85112 1.00656 1.44452 1.15400 1.03215 1.69573 1.19006 0.90079 0.95826 1.30821 0.90667 1.24796 0.97177 0.97361 1.00891 1.69949 1.24131 1.15276 1.46908 0.86153 0.81184 0.78543 0.80181 1.21713 1.21805 1.20647 1.21425 0.87909 0.93419 0.95644 1.21830 0.94922 0.96177 0.95811 1.21718 0.94817 1.00940 1.01400 1.21690 1.02476 1.00928 0.93467 1.20380 0.88065 0.84573 0.75331 1.90743 1.78143 1.20765 1.49974 0.89855 0.92010 0.92015 0.90170 0.90463 0.86947 0.89415 0.76008 0.94629 0.90775 0.93709 0.95903 0.95741 0.92767 0.93183 0.92467 0.91655 0.93198 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.14 59.85 0.67 1.45 16 2 N -0.62 -6.85 3.33 -180.06 -0.60 -7.45 16 3 C 0.10 0.93 7.36 -2.93 -0.02 0.91 16 4 C -0.12 -1.22 6.54 -24.91 -0.16 -1.38 16 5 C -0.15 -2.06 3.32 -91.78 -0.30 -2.37 16 6 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 7 C 0.53 9.26 7.17 -10.99 -0.08 9.18 16 8 O -0.54 -10.63 15.10 5.56 0.08 -10.54 16 9 N -0.69 -12.64 4.48 -51.61 -0.23 -12.87 16 10 C 0.12 2.36 2.67 -65.66 -0.18 2.19 16 11 H 0.09 1.76 7.44 -51.93 -0.39 1.37 16 12 C 0.17 4.17 4.82 -2.41 -0.01 4.16 16 13 N -0.60 -15.19 3.39 -169.94 -0.58 -15.76 16 14 C -0.23 -6.39 10.24 -15.06 -0.15 -6.54 16 15 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 16 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 17 N -0.92 -27.17 10.68 55.49 0.59 -26.57 16 18 Si 0.91 22.28 29.56 -169.99 -5.03 17.26 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.14 2.96 6.41 -3.07 -0.02 2.94 16 23 C -0.09 -1.51 0.80 -152.68 -0.12 -1.63 16 24 C -0.13 -1.97 8.15 37.16 0.30 -1.67 16 25 C -0.13 -2.03 8.44 37.16 0.31 -1.71 16 26 C 0.53 7.42 7.29 -10.87 -0.08 7.34 16 27 O -0.52 -8.74 17.31 5.55 0.10 -8.65 16 28 H 0.08 0.78 7.53 -51.93 -0.39 0.39 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.31 6.94 -51.93 -0.36 0.95 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 7.29 7.09 -40.82 -0.29 7.00 16 36 H 0.04 0.95 7.65 -51.93 -0.40 0.55 16 37 H 0.07 2.09 6.91 -51.93 -0.36 1.73 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.02 0.47 7.82 -51.93 -0.41 0.07 16 40 H 0.02 0.52 7.84 -51.93 -0.41 0.11 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.90 6.34 -51.93 -0.33 0.57 16 44 H 0.06 1.16 7.44 -51.93 -0.39 0.77 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -33.39 365.52 -7.58 -40.97 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.49 Total: 5.49 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 0.06 Total: 12.62 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.82 Total: -62.65 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.18 Total: -19.19 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.39 -7.58 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974948922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.299 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds