Wall clock time and date at job start Fri Apr 10 2020 18:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46767 * 124.34581 * 2 1 4 4 C 1.54835 * 105.49119 * 197.05438 * 3 2 1 5 5 C 1.54632 * 101.60418 * 334.56825 * 4 3 2 6 6 H 1.09001 * 110.48468 * 143.57108 * 5 4 3 7 7 C 1.50698 * 110.48333 * 266.08164 * 5 4 3 8 8 O 1.21276 * 120.00324 * 358.15693 * 7 5 4 9 9 N 1.34779 * 119.99534 * 178.16278 * 7 5 4 10 10 C 1.46509 * 119.99762 * 179.97438 * 9 7 5 11 11 H 1.09004 * 110.88537 * 31.11705 * 10 9 7 12 12 C 1.55122 * 111.19006 * 267.18417 * 10 9 7 13 13 N 1.47425 * 104.72620 * 279.18821 * 12 10 9 14 14 C 1.36934 * 125.64935 * 155.81410 * 13 12 10 15 15 H 1.08002 * 119.99686 * 189.80166 * 14 13 12 16 16 C 1.38804 * 120.00070 * 9.53495 * 14 13 12 17 17 N 1.31620 * 120.00406 * 9.87362 * 16 14 13 18 18 Si 1.86799 * 120.00161 * 189.87496 * 16 14 13 19 19 H 1.48502 * 109.47270 * 94.12759 * 18 16 14 20 20 H 1.48496 * 109.47727 * 214.12668 * 18 16 14 21 21 H 1.48500 * 109.47334 * 334.13189 * 18 16 14 22 22 C 1.47020 * 108.69873 * 335.55721 * 13 12 10 23 23 C 1.54319 * 107.27483 * 1.28524 * 22 13 12 24 24 C 1.52999 * 110.72489 * 140.55852 * 23 22 13 25 25 C 1.53001 * 110.71754 * 263.65465 * 23 22 13 26 26 C 1.34415 * 124.35309 * 180.02562 * 2 1 3 27 27 O 1.21285 * 124.93901 * 359.54513 * 26 2 1 28 28 H 1.08998 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47227 * 300.00599 * 1 2 3 30 30 H 1.09005 * 109.47094 * 60.00124 * 1 2 3 31 31 H 1.09000 * 110.24765 * 316.03396 * 3 2 1 32 32 H 1.08999 * 110.24743 * 77.95154 * 3 2 1 33 33 H 1.08998 * 111.08073 * 216.49032 * 4 3 2 34 34 H 1.08998 * 111.01425 * 92.61734 * 4 3 2 35 35 H 0.96999 * 120.00432 * 359.97438 * 9 7 5 36 36 H 1.09001 * 110.49915 * 160.34996 * 12 10 9 37 37 H 1.08996 * 110.34738 * 37.95487 * 12 10 9 38 38 H 0.97000 * 120.00544 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.88231 * 120.70045 * 22 13 12 40 40 H 1.09004 * 109.88149 * 241.86211 * 22 13 12 41 41 H 1.08997 * 109.47411 * 61.44969 * 24 23 22 42 42 H 1.08997 * 109.47073 * 181.45557 * 24 23 22 43 43 H 1.09007 * 109.46772 * 301.45057 * 24 23 22 44 44 H 1.08996 * 109.47456 * 58.54759 * 25 23 22 45 45 H 1.09007 * 109.47303 * 178.54628 * 25 23 22 46 46 H 1.08996 * 109.46978 * 298.53952 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7042 0.7484 -0.4376 5 6 3.6898 -0.7378 -0.0108 6 1 4.2329 -1.3473 -0.7330 7 6 4.2841 -0.8971 1.3648 8 8 4.7190 0.0700 1.9534 9 7 4.3326 -2.1146 1.9410 10 6 4.9109 -2.2697 3.2782 11 1 4.7533 -1.3721 3.8762 12 6 6.4187 -2.6256 3.1991 13 7 6.4480 -4.0755 2.9341 14 6 7.4746 -4.7570 2.3366 15 1 7.3399 -5.7875 2.0430 16 6 8.6864 -4.1216 2.1034 17 7 8.9190 -2.9358 2.6250 18 14 9.9874 -4.9494 1.0490 19 1 9.8565 -4.4838 -0.3551 20 1 11.3364 -4.6005 1.5623 21 1 9.8035 -6.4220 1.1012 22 6 5.1952 -4.6696 3.4231 23 6 4.3349 -3.5214 3.9914 24 6 2.8612 -3.7196 3.6311 25 6 4.5097 -3.4135 5.5076 26 6 2.2235 -1.1097 -0.0005 27 8 1.7947 -2.2442 0.0069 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8982 1.9385 -0.7100 32 1 2.3296 1.6437 1.0001 33 1 4.4801 1.2994 0.0939 34 1 3.8297 0.8433 -1.5162 35 1 3.9845 -2.8881 1.4705 36 1 6.9135 -2.4028 4.1444 37 1 6.8943 -2.0812 2.3834 38 1 9.7657 -2.4916 2.4617 39 1 4.6693 -5.1548 2.6008 40 1 5.4104 -5.3950 4.2076 41 1 2.5019 -4.6505 4.0697 42 1 2.2769 -2.8856 4.0196 43 1 2.7550 -3.7640 2.5472 44 1 5.5606 -3.2429 5.7410 45 1 3.9142 -2.5815 5.8837 46 1 4.1785 -4.3392 5.9782 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974948922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:16 Heat of formation + Delta-G solvation = -63.823729 kcal Electronic energy + Delta-G solvation = -27505.495090 eV Core-core repulsion = 23815.870605 eV Total energy + Delta-G solvation = -3689.624485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.12132 -40.73783 -39.30344 -37.45528 -35.67193 -34.57238 -33.77275 -32.66092 -30.13867 -28.87881 -27.95206 -27.67328 -27.41183 -25.23743 -23.60941 -22.22083 -21.56556 -20.71174 -20.07830 -18.75946 -18.66964 -17.85139 -17.39880 -16.90326 -16.64673 -16.43802 -15.73412 -15.43096 -15.41225 -15.13260 -14.76633 -14.65797 -14.53993 -14.12844 -13.85096 -13.71645 -13.65575 -13.50960 -13.19828 -13.16395 -13.08622 -12.83508 -12.64339 -12.59454 -12.40315 -12.18679 -12.07589 -11.83472 -11.79877 -11.58494 -11.40637 -11.18446 -10.88981 -10.69569 -10.02144 -9.75781 -8.84442 -7.87318 -5.22512 1.18195 1.44304 1.45785 1.52445 1.55071 1.98827 2.27872 2.48459 3.19267 3.31519 3.40159 3.51554 3.63009 3.69632 3.92526 3.95852 4.03187 4.19154 4.36782 4.38125 4.43183 4.46406 4.64202 4.68080 4.69747 4.78873 4.83943 4.87443 4.88659 4.97199 5.01333 5.07344 5.10673 5.15297 5.25542 5.28415 5.45833 5.47916 5.50004 5.66145 5.67809 5.93109 6.18742 6.48628 6.97181 7.06503 7.14451 7.75505 8.42303 9.23703 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.004710 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.874691 B = 5943.858373 C = 6820.423909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.615 5.615 3 C 0.103 3.897 4 C -0.113 4.113 5 C -0.152 4.152 6 H 0.136 0.864 7 C 0.526 3.474 8 O -0.565 6.565 9 N -0.693 5.693 10 C 0.133 3.867 11 H 0.088 0.912 12 C 0.184 3.816 13 N -0.617 5.617 14 C -0.241 4.241 15 H 0.080 0.920 16 C -0.061 4.061 17 N -0.948 5.948 18 Si 0.975 3.025 19 H -0.288 1.288 20 H -0.296 1.296 21 H -0.267 1.267 22 C 0.138 3.862 23 C -0.074 4.074 24 C -0.121 4.121 25 C -0.125 4.125 26 C 0.525 3.475 27 O -0.556 6.556 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.406 0.594 36 H 0.002 0.998 37 H 0.030 0.970 38 H 0.246 0.754 39 H 0.030 0.970 40 H 0.026 0.974 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.715 8.232 -4.655 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.348 5.348 3 C -0.019 4.019 4 C -0.150 4.150 5 C -0.176 4.176 6 H 0.153 0.847 7 C 0.311 3.689 8 O -0.444 6.444 9 N -0.343 5.343 10 C 0.027 3.973 11 H 0.106 0.894 12 C 0.058 3.942 13 N -0.343 5.343 14 C -0.370 4.370 15 H 0.098 0.902 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.804 3.196 19 H -0.215 1.215 20 H -0.222 1.222 21 H -0.191 1.191 22 C 0.013 3.987 23 C -0.075 4.075 24 C -0.178 4.178 25 C -0.182 4.182 26 C 0.311 3.689 27 O -0.435 6.435 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.242 0.758 36 H 0.020 0.980 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.555 8.343 -4.271 20.787 hybrid contribution 1.336 -0.828 -0.545 1.664 sum -17.218 7.515 -4.816 19.394 Atomic orbital electron populations 1.21794 0.76059 1.03649 1.03689 1.48275 1.07777 1.07097 1.71660 1.22373 0.89350 0.86778 1.03363 1.22713 0.98154 0.90215 1.03962 1.22217 0.95568 1.03671 0.96171 0.84678 1.20196 0.78495 0.82882 0.87298 1.90653 1.49379 1.39507 1.64884 1.45834 1.60324 1.09690 1.18429 1.22294 0.93842 0.98076 0.83056 0.89444 1.21444 0.90991 0.84697 0.97103 1.44674 1.16282 1.03707 1.69621 1.19394 0.90893 0.96211 1.30543 0.90213 1.25616 0.99413 0.98091 1.02371 1.70170 1.24246 1.16808 1.48388 0.85113 0.78100 0.78253 0.78178 1.21525 1.22229 1.19129 1.21615 0.86620 0.94589 0.95833 1.21811 0.96031 0.93127 0.96539 1.21636 0.92508 1.02637 1.01058 1.21679 1.01244 1.03054 0.92236 1.20369 0.88183 0.84796 0.75512 1.90717 1.78574 1.22180 1.51983 0.91251 0.90408 0.89141 0.86188 0.90980 0.88399 0.86420 0.75774 0.97974 0.95195 0.94450 0.95233 0.95625 0.90558 0.91875 0.93320 0.94404 0.90942 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 11.14 127.77 1.42 2.64 16 2 N -0.61 -12.04 3.33 -842.17 -2.81 -14.84 16 3 C 0.10 1.58 7.36 86.95 0.64 2.22 16 4 C -0.11 -2.14 6.54 31.78 0.21 -1.93 16 5 C -0.15 -4.06 3.32 -11.55 -0.04 -4.09 16 6 H 0.14 3.48 8.14 -2.39 -0.02 3.46 16 7 C 0.53 18.60 7.17 87.66 0.63 19.23 16 8 O -0.56 -22.84 15.10 -3.02 -0.05 -22.89 16 9 N -0.69 -25.71 4.48 -435.60 -1.95 -27.66 16 10 C 0.13 5.35 2.67 46.46 0.12 5.47 16 11 H 0.09 3.54 7.44 -2.38 -0.02 3.52 16 12 C 0.18 9.50 4.82 86.93 0.42 9.92 16 13 N -0.62 -32.13 3.39 -691.58 -2.35 -34.47 16 14 C -0.24 -13.76 10.24 84.03 0.86 -12.90 16 15 H 0.08 4.37 7.85 -2.91 -0.02 4.34 16 16 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 17 N -0.95 -58.74 10.68 21.65 0.23 -58.51 16 18 Si 0.98 46.72 29.56 68.60 2.03 48.75 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 20 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 C 0.14 5.74 6.41 86.73 0.56 6.29 16 23 C -0.07 -2.53 0.80 -51.00 -0.04 -2.57 16 24 C -0.12 -3.35 8.15 71.98 0.59 -2.76 16 25 C -0.12 -3.79 8.44 71.98 0.61 -3.18 16 26 C 0.53 14.09 7.29 87.90 0.64 14.73 16 27 O -0.56 -18.35 17.31 -3.04 -0.05 -18.40 16 28 H 0.07 1.18 7.53 -2.39 -0.02 1.16 16 29 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 2.21 6.94 -2.39 -0.02 2.19 16 34 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.41 14.77 7.09 -92.71 -0.66 14.12 16 36 H 0.00 0.14 7.65 -2.39 -0.02 0.12 16 37 H 0.03 1.78 6.91 -2.39 -0.02 1.77 16 38 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.03 1.20 7.82 -2.39 -0.02 1.18 16 40 H 0.03 1.07 7.84 -2.39 -0.02 1.05 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.05 1.45 6.34 -2.38 -0.02 1.44 16 44 H 0.04 1.35 7.44 -2.39 -0.02 1.33 16 45 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -76.04 365.52 2.45 -73.59 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.32 Total: 24.48 kcal Atomic # 6 Polarization: 22.89 SS G_CDS: 7.07 Total: 29.96 kcal Atomic # 7 Polarization: -128.62 SS G_CDS: -6.87 Total: -135.49 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.10 Total: -41.29 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -76.04 2.45 -73.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974948922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.764 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds