Wall clock time and date at job start Fri Apr 10 2020 18:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 110.91613 * 2 1 4 4 C 1.54915 * 111.00349 * 236.09890 * 2 1 3 5 5 N 1.47430 * 104.83069 * 278.93451 * 4 2 1 6 6 C 1.36935 * 125.64941 * 155.82570 * 5 4 2 7 7 H 1.08002 * 119.99427 * 353.84374 * 6 5 4 8 8 C 1.38803 * 120.00133 * 173.84786 * 6 5 4 9 9 N 1.31617 * 120.00253 * 6.80199 * 8 6 5 10 10 Si 1.86803 * 119.99903 * 186.80476 * 8 6 5 11 11 H 1.48502 * 109.46950 * 94.98576 * 10 8 6 12 12 H 1.48498 * 109.47069 * 214.98354 * 10 8 6 13 13 H 1.48496 * 109.47268 * 334.98774 * 10 8 6 14 14 C 1.47024 * 108.70340 * 335.87254 * 5 4 2 15 15 C 1.54324 * 107.27286 * 1.05834 * 14 5 4 16 16 H 1.08999 * 110.87568 * 140.62721 * 15 14 5 17 17 N 1.46502 * 110.72243 * 263.83380 * 15 14 5 18 18 C 1.34770 * 119.99955 * 268.52451 * 17 15 14 19 19 O 1.21284 * 120.00280 * 359.97438 * 18 17 15 20 20 C 1.50705 * 120.00392 * 179.97438 * 18 17 15 21 21 C 1.52997 * 110.28555 * 276.97555 * 20 18 17 22 22 C 1.54474 * 110.24621 * 154.99568 * 20 18 17 23 23 C 1.54630 * 101.76481 * 266.41576 * 22 20 18 24 24 C 1.51282 * 104.19796 * 335.20476 * 23 22 20 25 25 O 1.21280 * 124.94092 * 196.28902 * 24 23 22 26 26 N 1.34422 * 110.11278 * 16.25190 * 24 23 22 27 27 H 1.09005 * 109.46846 * 296.09573 * 1 2 3 28 28 H 1.08997 * 109.47337 * 56.09574 * 1 2 3 29 29 H 1.09004 * 109.47604 * 176.10149 * 1 2 3 30 30 H 1.09000 * 109.47013 * 183.90600 * 3 2 1 31 31 H 1.09004 * 109.46896 * 303.90137 * 3 2 1 32 32 H 1.09001 * 109.47461 * 63.90268 * 3 2 1 33 33 H 1.09003 * 110.36637 * 37.77009 * 4 2 1 34 34 H 1.09000 * 110.36587 * 159.98612 * 4 2 1 35 35 H 0.97000 * 120.00501 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.87900 * 241.64470 * 14 5 4 37 37 H 1.08990 * 109.88495 * 120.47680 * 14 5 4 38 38 H 0.97004 * 120.00399 * 88.51474 * 17 15 14 39 39 H 1.09000 * 109.46901 * 298.02085 * 21 20 18 40 40 H 1.09001 * 109.47631 * 58.01673 * 21 20 18 41 41 H 1.08994 * 109.47309 * 178.01977 * 21 20 18 42 42 H 1.08995 * 110.97150 * 24.54038 * 22 20 18 43 43 H 1.09005 * 110.96693 * 148.26478 * 22 20 18 44 44 H 1.08995 * 110.48642 * 93.88472 * 23 22 20 45 45 H 1.09008 * 110.48299 * 216.52577 * 23 22 20 46 46 H 0.97000 * 124.34977 * 180.42958 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0761 1.4291 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 2.0138 -2.2159 -0.7734 6 6 1.9443 -3.3000 -1.6071 7 1 1.8384 -3.1560 -2.6723 8 6 2.0100 -4.5837 -1.0834 9 7 2.0041 -4.7637 0.2204 10 14 2.1070 -6.0560 -2.2291 11 1 3.5282 -6.4424 -2.4193 12 1 1.3596 -7.1943 -1.6367 13 1 1.5104 -5.7017 -3.5420 14 6 2.0284 -2.2647 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 1.4541 -0.6767 2.0805 17 7 3.4667 -0.4156 1.4962 18 6 3.9655 -0.5841 2.7367 19 8 3.2714 -1.0601 3.6100 20 6 5.3858 -0.1810 3.0390 21 6 6.3523 -1.2919 2.6237 22 6 5.5443 0.1307 4.5437 23 6 5.3138 1.6594 4.5750 24 6 5.6800 2.1185 3.1808 25 8 5.9068 3.2673 2.8650 26 7 5.7183 1.0678 2.3433 27 1 -0.3633 0.4521 0.9230 28 1 -0.3634 0.5732 -0.8529 29 1 -0.3634 -1.0253 -0.0699 30 1 3.1636 1.4025 -0.0700 31 1 1.6704 1.9731 -0.8530 32 1 1.7836 1.9300 0.9229 33 1 1.4671 -0.6462 -2.0837 34 1 3.1175 -0.5219 -1.4037 35 1 2.0496 -5.6609 0.5864 36 1 2.9063 -2.8116 1.0400 37 1 1.1219 -2.7479 1.0599 38 1 4.0218 -0.0346 0.7978 39 1 6.1388 -2.1930 3.1987 40 1 6.2300 -1.5016 1.5611 41 1 7.3767 -0.9728 2.8154 42 1 4.7885 -0.3900 5.1316 43 1 6.5468 -0.1204 4.8905 44 1 4.2686 1.8832 4.7881 45 1 5.9637 2.1281 5.3141 46 1 5.9378 1.1272 1.4003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974999889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:45 Heat of formation + Delta-G solvation = -48.292400 kcal Electronic energy + Delta-G solvation = -27638.100830 eV Core-core repulsion = 23949.149834 eV Total energy + Delta-G solvation = -3688.950996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.17532 -39.40338 -38.08119 -36.37971 -33.98253 -33.14853 -31.39419 -30.98679 -30.74023 -28.16613 -26.87621 -25.68428 -25.09095 -23.84754 -22.48598 -20.86443 -20.36786 -19.77352 -18.92248 -17.88543 -16.89363 -16.73169 -15.93170 -15.49005 -15.04008 -14.73452 -14.23997 -14.18071 -14.04439 -13.92328 -13.66170 -13.46683 -13.28805 -12.76747 -12.68217 -12.55275 -12.34153 -12.06406 -12.02146 -11.73793 -11.45101 -11.33562 -11.20727 -11.11964 -11.02428 -10.82260 -10.48550 -10.33732 -10.21734 -10.06766 -10.01444 -9.92614 -9.68849 -9.06059 -8.66681 -8.52386 -6.86947 -5.75208 -3.08924 2.41381 2.63800 3.20618 3.34045 3.37110 3.42652 3.44781 4.07243 4.31095 4.46112 4.54623 4.79680 4.87620 4.93813 5.11953 5.22988 5.27340 5.40226 5.47172 5.51220 5.55440 5.59803 5.70796 5.76341 5.87260 5.89418 5.94104 5.98326 6.12247 6.15752 6.20466 6.33309 6.50038 6.53299 6.56501 6.62918 6.66074 6.77843 6.89439 7.47347 7.59711 7.74114 7.82495 8.04599 8.20628 8.43185 9.17287 9.78083 10.43805 11.35962 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.004547 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.862404 B = 6156.808864 C = 6986.365983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.129 4.129 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.004 4.004 9 N -0.917 5.917 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.176 3.824 15 C 0.122 3.878 16 H 0.090 0.910 17 N -0.699 5.699 18 C 0.511 3.489 19 O -0.532 6.532 20 C 0.141 3.859 21 C -0.151 4.151 22 C -0.115 4.115 23 C -0.158 4.158 24 C 0.525 3.475 25 O -0.534 6.534 26 N -0.721 5.721 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.015 0.985 35 H 0.253 0.747 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.394 0.606 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.485 11.085 6.234 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 C -0.187 4.187 4 C 0.017 3.983 5 N -0.328 5.328 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.201 4.201 9 N -0.564 5.564 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.050 3.950 15 C 0.017 3.983 16 H 0.108 0.892 17 N -0.348 5.348 18 C 0.294 3.706 19 O -0.408 6.408 20 C 0.051 3.949 21 C -0.209 4.209 22 C -0.153 4.153 23 C -0.198 4.198 24 C 0.311 3.689 25 O -0.410 6.410 26 N -0.378 5.378 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.229 0.771 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 6.037 11.088 6.837 14.358 hybrid contribution 0.425 -0.809 -1.486 1.744 sum 6.462 10.280 5.351 13.269 Atomic orbital electron populations 1.21596 0.93236 1.02919 1.00576 1.22028 0.96412 0.94127 0.96588 1.21655 1.00080 0.95562 1.01385 1.21625 0.96515 0.85772 0.94338 1.44431 1.86896 0.99745 1.01747 1.19028 1.43657 0.83815 0.89431 0.90476 1.24811 1.02039 0.97344 0.95930 1.69968 1.56326 1.20673 1.09422 0.86154 0.77549 0.82684 0.79713 1.21693 1.21769 1.20661 1.21524 1.01605 0.88404 0.83465 1.22538 0.80925 0.97629 0.97201 0.89229 1.45946 1.14885 1.63071 1.10931 1.20470 0.88388 0.78791 0.82943 1.90709 1.59552 1.44461 1.46071 1.21294 0.93072 0.85945 0.94618 1.22053 0.98107 0.97396 1.03383 1.22660 1.04780 0.95049 0.92807 1.22400 1.04869 0.96898 0.95640 1.20910 0.75068 0.84406 0.88485 1.90758 1.50073 1.18833 1.81379 1.46365 1.71011 1.07786 1.12654 0.93336 0.92853 0.91193 0.93288 0.92603 0.92940 0.94105 0.96786 0.93679 0.93038 0.93177 0.77136 0.89781 0.91056 0.90727 0.87077 0.89086 0.87572 0.87723 0.75031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.57 37.15 0.32 -1.65 16 2 C -0.09 -1.45 0.83 -152.36 -0.13 -1.58 16 3 C -0.13 -1.70 8.22 37.16 0.31 -1.40 16 4 C 0.14 2.76 6.12 -2.52 -0.02 2.74 16 5 N -0.60 -14.45 3.38 -170.07 -0.57 -15.03 16 6 C -0.23 -6.21 10.26 -15.06 -0.15 -6.36 16 7 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 8 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 9 N -0.92 -26.49 10.36 55.49 0.58 -25.92 16 10 Si 0.91 21.69 29.56 -169.99 -5.02 16.66 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.18 4.12 4.80 -3.06 -0.01 4.10 16 15 C 0.12 2.21 2.59 -66.09 -0.17 2.04 16 16 H 0.09 1.71 7.45 -51.93 -0.39 1.32 16 17 N -0.70 -10.79 4.36 -52.03 -0.23 -11.02 16 18 C 0.51 7.78 6.75 -10.99 -0.07 7.70 16 19 O -0.53 -9.89 15.28 5.55 0.08 -9.81 16 20 C 0.14 1.56 1.11 -132.05 -0.15 1.42 16 21 C -0.15 -1.52 8.79 37.16 0.33 -1.19 16 22 C -0.11 -1.08 6.14 -25.10 -0.15 -1.23 16 23 C -0.16 -1.51 6.85 -26.74 -0.18 -1.69 16 24 C 0.52 6.38 8.43 -10.86 -0.09 6.29 16 25 O -0.53 -8.45 18.03 5.56 0.10 -8.35 16 26 N -0.72 -7.53 4.97 -47.68 -0.24 -7.76 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 30 H 0.05 0.61 6.48 -51.93 -0.34 0.27 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.01 0.27 7.98 -51.93 -0.41 -0.15 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.05 1.38 7.27 -51.93 -0.38 1.00 16 37 H 0.05 1.34 7.55 -51.93 -0.39 0.95 16 38 H 0.39 5.41 6.51 -40.82 -0.27 5.15 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.11 1.18 6.88 -51.93 -0.36 0.82 16 43 H 0.09 0.65 7.91 -51.93 -0.41 0.24 16 44 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.10 0.81 8.14 -51.92 -0.42 0.38 16 46 H 0.41 3.81 8.79 -40.82 -0.36 3.45 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -32.73 364.44 -7.57 -40.30 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.48 Total: 6.47 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -0.28 Total: 8.97 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.46 Total: -59.73 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.19 Total: -18.16 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.73 -7.57 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974999889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.997 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds