Wall clock time and date at job start Fri Apr 10 2020 18:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 110.91613 * 2 1 4 4 C 1.54915 * 111.00349 * 236.09890 * 2 1 3 5 5 N 1.47430 * 104.83069 * 278.93451 * 4 2 1 6 6 C 1.36935 * 125.64941 * 155.82570 * 5 4 2 7 7 H 1.08002 * 119.99427 * 353.84374 * 6 5 4 8 8 C 1.38803 * 120.00133 * 173.84786 * 6 5 4 9 9 N 1.31617 * 120.00253 * 6.80199 * 8 6 5 10 10 Si 1.86803 * 119.99903 * 186.80476 * 8 6 5 11 11 H 1.48502 * 109.46950 * 94.98576 * 10 8 6 12 12 H 1.48498 * 109.47069 * 214.98354 * 10 8 6 13 13 H 1.48496 * 109.47268 * 334.98774 * 10 8 6 14 14 C 1.47024 * 108.70340 * 335.87254 * 5 4 2 15 15 C 1.54324 * 107.27286 * 1.05834 * 14 5 4 16 16 H 1.08999 * 110.87568 * 140.62721 * 15 14 5 17 17 N 1.46502 * 110.72243 * 263.83380 * 15 14 5 18 18 C 1.34770 * 119.99955 * 268.52451 * 17 15 14 19 19 O 1.21284 * 120.00280 * 359.97438 * 18 17 15 20 20 C 1.50705 * 120.00392 * 179.97438 * 18 17 15 21 21 C 1.52997 * 110.28555 * 276.97555 * 20 18 17 22 22 C 1.54474 * 110.24621 * 154.99568 * 20 18 17 23 23 C 1.54630 * 101.76481 * 266.41576 * 22 20 18 24 24 C 1.51282 * 104.19796 * 335.20476 * 23 22 20 25 25 O 1.21280 * 124.94092 * 196.28902 * 24 23 22 26 26 N 1.34422 * 110.11278 * 16.25190 * 24 23 22 27 27 H 1.09005 * 109.46846 * 296.09573 * 1 2 3 28 28 H 1.08997 * 109.47337 * 56.09574 * 1 2 3 29 29 H 1.09004 * 109.47604 * 176.10149 * 1 2 3 30 30 H 1.09000 * 109.47013 * 183.90600 * 3 2 1 31 31 H 1.09004 * 109.46896 * 303.90137 * 3 2 1 32 32 H 1.09001 * 109.47461 * 63.90268 * 3 2 1 33 33 H 1.09003 * 110.36637 * 37.77009 * 4 2 1 34 34 H 1.09000 * 110.36587 * 159.98612 * 4 2 1 35 35 H 0.97000 * 120.00501 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.87900 * 241.64470 * 14 5 4 37 37 H 1.08990 * 109.88495 * 120.47680 * 14 5 4 38 38 H 0.97004 * 120.00399 * 88.51474 * 17 15 14 39 39 H 1.09000 * 109.46901 * 298.02085 * 21 20 18 40 40 H 1.09001 * 109.47631 * 58.01673 * 21 20 18 41 41 H 1.08994 * 109.47309 * 178.01977 * 21 20 18 42 42 H 1.08995 * 110.97150 * 24.54038 * 22 20 18 43 43 H 1.09005 * 110.96693 * 148.26478 * 22 20 18 44 44 H 1.08995 * 110.48642 * 93.88472 * 23 22 20 45 45 H 1.09008 * 110.48299 * 216.52577 * 23 22 20 46 46 H 0.97000 * 124.34977 * 180.42958 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0761 1.4291 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 2.0138 -2.2159 -0.7734 6 6 1.9443 -3.3000 -1.6071 7 1 1.8384 -3.1560 -2.6723 8 6 2.0100 -4.5837 -1.0834 9 7 2.0041 -4.7637 0.2204 10 14 2.1070 -6.0560 -2.2291 11 1 3.5282 -6.4424 -2.4193 12 1 1.3596 -7.1943 -1.6367 13 1 1.5104 -5.7017 -3.5420 14 6 2.0284 -2.2647 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 1.4541 -0.6767 2.0805 17 7 3.4667 -0.4156 1.4962 18 6 3.9655 -0.5841 2.7367 19 8 3.2714 -1.0601 3.6100 20 6 5.3858 -0.1810 3.0390 21 6 6.3523 -1.2919 2.6237 22 6 5.5443 0.1307 4.5437 23 6 5.3138 1.6594 4.5750 24 6 5.6800 2.1185 3.1808 25 8 5.9068 3.2673 2.8650 26 7 5.7183 1.0678 2.3433 27 1 -0.3633 0.4521 0.9230 28 1 -0.3634 0.5732 -0.8529 29 1 -0.3634 -1.0253 -0.0699 30 1 3.1636 1.4025 -0.0700 31 1 1.6704 1.9731 -0.8530 32 1 1.7836 1.9300 0.9229 33 1 1.4671 -0.6462 -2.0837 34 1 3.1175 -0.5219 -1.4037 35 1 2.0496 -5.6609 0.5864 36 1 2.9063 -2.8116 1.0400 37 1 1.1219 -2.7479 1.0599 38 1 4.0218 -0.0346 0.7978 39 1 6.1388 -2.1930 3.1987 40 1 6.2300 -1.5016 1.5611 41 1 7.3767 -0.9728 2.8154 42 1 4.7885 -0.3900 5.1316 43 1 6.5468 -0.1204 4.8905 44 1 4.2686 1.8832 4.7881 45 1 5.9637 2.1281 5.3141 46 1 5.9378 1.1272 1.4003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974999889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:43 Heat of formation + Delta-G solvation = -72.039553 kcal Electronic energy + Delta-G solvation = -27639.130584 eV Core-core repulsion = 23949.149834 eV Total energy + Delta-G solvation = -3689.980750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23140 -40.72798 -39.43061 -37.47946 -35.72747 -34.57446 -32.62586 -32.24886 -31.90715 -29.79741 -28.12496 -27.44505 -26.06760 -25.29455 -23.75235 -22.06622 -21.76166 -21.01636 -20.23554 -19.07520 -18.69699 -17.83004 -17.35779 -16.80686 -16.33987 -16.20153 -15.71046 -15.51939 -15.34538 -15.12553 -14.86826 -14.79980 -14.29153 -14.02902 -13.85209 -13.55419 -13.53275 -13.46096 -13.25056 -13.16334 -12.99787 -12.82969 -12.68598 -12.62584 -12.14820 -12.10828 -12.01466 -11.87975 -11.77336 -11.56841 -11.43689 -11.35446 -11.01171 -10.73762 -10.15692 -10.00050 -8.88156 -7.84998 -5.20185 1.43728 1.45352 1.45998 1.48800 1.55333 2.12141 2.24537 2.48997 3.21133 3.33507 3.43778 3.49611 3.60880 3.72572 3.83802 3.93677 4.02951 4.08311 4.36054 4.36392 4.49316 4.60253 4.65353 4.74436 4.79637 4.82773 4.83740 4.91276 4.99779 5.01790 5.08283 5.09895 5.13317 5.14022 5.27515 5.30107 5.46243 5.51187 5.61265 5.70325 5.75462 5.89764 6.17747 6.50655 7.08421 7.13060 7.18793 7.77518 8.42171 9.24769 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.004547 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.862404 B = 6156.808864 C = 6986.365983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.121 4.121 4 C 0.139 3.861 5 N -0.618 5.618 6 C -0.238 4.238 7 H 0.084 0.916 8 C -0.063 4.063 9 N -0.950 5.950 10 Si 0.973 3.027 11 H -0.288 1.288 12 H -0.299 1.299 13 H -0.267 1.267 14 C 0.194 3.806 15 C 0.136 3.864 16 H 0.080 0.920 17 N -0.694 5.694 18 C 0.505 3.495 19 O -0.569 6.569 20 C 0.150 3.850 21 C -0.148 4.148 22 C -0.109 4.109 23 C -0.153 4.153 24 C 0.524 3.476 25 O -0.572 6.572 26 N -0.709 5.709 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.030 0.970 35 H 0.244 0.756 36 H 0.011 0.989 37 H 0.002 0.998 38 H 0.405 0.595 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.104 0.896 45 H 0.129 0.871 46 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.827 13.016 5.640 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.078 4.078 3 C -0.179 4.179 4 C 0.014 3.986 5 N -0.344 5.344 6 C -0.367 4.367 7 H 0.102 0.898 8 C -0.256 4.256 9 N -0.599 5.599 10 Si 0.802 3.198 11 H -0.215 1.215 12 H -0.226 1.226 13 H -0.191 1.191 14 C 0.067 3.933 15 C 0.029 3.971 16 H 0.098 0.902 17 N -0.344 5.344 18 C 0.290 3.710 19 O -0.447 6.447 20 C 0.060 3.940 21 C -0.206 4.206 22 C -0.147 4.147 23 C -0.193 4.193 24 C 0.312 3.688 25 O -0.451 6.451 26 N -0.365 5.365 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.029 0.971 37 H 0.020 0.980 38 H 0.241 0.759 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.141 0.859 44 H 0.122 0.878 45 H 0.147 0.853 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 7.399 13.052 6.197 16.233 hybrid contribution -0.034 -1.422 -1.324 1.944 sum 7.365 11.630 4.872 14.603 Atomic orbital electron populations 1.21584 0.92822 1.01152 1.02527 1.21983 0.96714 0.95515 0.93549 1.21608 1.00664 0.92885 1.02723 1.21858 0.97563 0.83480 0.95669 1.44650 1.86589 1.01417 1.01772 1.19438 1.42210 0.84901 0.90164 0.89804 1.25609 1.02690 1.00098 0.97217 1.70213 1.58033 1.20411 1.11204 0.85134 0.77283 0.79057 0.78334 1.21484 1.22596 1.19120 1.21102 0.97388 0.91206 0.83573 1.22107 0.82702 0.94742 0.97501 0.90241 1.45831 1.13939 1.62942 1.11678 1.21329 0.89865 0.77650 0.82141 1.90695 1.60967 1.45932 1.47094 1.21230 0.90194 0.86470 0.96103 1.22065 0.99375 0.96635 1.02563 1.22718 1.06244 0.94765 0.91009 1.22435 1.05273 0.96867 0.94679 1.21270 0.74194 0.83876 0.89486 1.90744 1.51898 1.20302 1.82167 1.46291 1.70076 1.07187 1.12990 0.91711 0.90513 0.94863 0.92308 0.90511 0.92244 0.93597 0.95208 0.94621 0.97129 0.98022 0.75881 0.90607 0.92052 0.87634 0.88271 0.85947 0.87797 0.85322 0.74307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.73 8.57 71.98 0.62 -3.11 16 2 C -0.08 -2.36 0.83 -50.79 -0.04 -2.40 16 3 C -0.12 -2.79 8.22 71.98 0.59 -2.20 16 4 C 0.14 5.18 6.12 86.86 0.53 5.71 16 5 N -0.62 -30.33 3.38 -691.97 -2.34 -32.67 16 6 C -0.24 -12.99 10.26 84.03 0.86 -12.13 16 7 H 0.08 4.36 7.84 -2.91 -0.02 4.33 16 8 C -0.06 -3.55 5.48 84.86 0.47 -3.09 16 9 N -0.95 -57.61 10.36 21.65 0.22 -57.39 16 10 Si 0.97 45.46 29.56 68.60 2.03 47.49 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 13 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 14 C 0.19 9.56 4.80 86.73 0.42 9.98 16 15 C 0.14 5.00 2.59 46.18 0.12 5.12 16 16 H 0.08 3.13 7.45 -2.39 -0.02 3.11 16 17 N -0.69 -21.15 4.36 -436.91 -1.91 -23.06 16 18 C 0.51 15.25 6.75 87.66 0.59 15.84 16 19 O -0.57 -21.62 15.28 -3.04 -0.05 -21.66 16 20 C 0.15 3.08 1.11 3.31 0.00 3.09 16 21 C -0.15 -2.71 8.79 71.98 0.63 -2.08 16 22 C -0.11 -1.80 6.14 31.65 0.19 -1.61 16 23 C -0.15 -2.54 6.85 30.59 0.21 -2.33 16 24 C 0.52 11.55 8.43 87.90 0.74 12.29 16 25 O -0.57 -17.08 18.03 -3.03 -0.05 -17.14 16 26 N -0.71 -13.19 4.97 -423.35 -2.11 -15.30 16 27 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.03 1.24 7.91 -2.38 -0.02 1.22 16 30 H 0.06 1.25 6.48 -2.39 -0.02 1.23 16 31 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.67 8.05 -2.39 -0.02 1.65 16 34 H 0.03 1.05 7.98 -2.39 -0.02 1.03 16 35 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.01 0.60 7.27 -2.39 -0.02 0.58 16 37 H 0.00 0.09 7.55 -2.39 -0.02 0.08 16 38 H 0.40 10.52 6.51 -92.71 -0.60 9.92 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 1.97 6.88 -2.39 -0.02 1.95 16 43 H 0.12 1.29 7.91 -2.38 -0.02 1.27 16 44 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.42 6.72 8.79 -92.71 -0.82 5.91 16 Total: -1.00 -75.07 364.44 1.31 -73.76 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.43 Total: 22.88 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 5.93 Total: 23.09 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -6.13 Total: -128.42 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.10 Total: -38.80 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -75.07 1.31 -73.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974999889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.723 kcal (2) G-P(sol) polarization free energy of solvation -75.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds