Wall clock time and date at job start Fri Apr 10 2020 18:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 110.77590 * 2 1 4 4 C 1.54318 * 110.72226 * 236.76187 * 2 1 3 5 5 N 1.47018 * 107.27291 * 219.44308 * 4 2 1 6 6 C 1.36937 * 125.65155 * 178.89424 * 5 4 2 7 7 H 1.07996 * 119.99912 * 341.56746 * 6 5 4 8 8 C 1.38819 * 119.99983 * 161.57244 * 6 5 4 9 9 N 1.31618 * 120.00106 * 157.60717 * 8 6 5 10 10 Si 1.86799 * 119.99870 * 337.59414 * 8 6 5 11 11 H 1.48499 * 109.46947 * 84.54637 * 10 8 6 12 12 H 1.48502 * 109.47088 * 204.54267 * 10 8 6 13 13 H 1.48500 * 109.47528 * 324.54425 * 10 8 6 14 14 C 1.47432 * 108.70065 * 358.93839 * 5 4 2 15 15 C 1.54900 * 104.83248 * 24.12746 * 14 5 4 16 16 H 1.08999 * 111.03785 * 204.90188 * 15 14 5 17 17 N 1.46504 * 111.00225 * 81.06566 * 15 14 5 18 18 C 1.34779 * 119.99827 * 92.80535 * 17 15 14 19 19 O 1.21278 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99778 * 180.02562 * 18 17 15 21 21 C 1.52994 * 110.54147 * 61.15307 * 20 18 17 22 22 C 1.54478 * 110.35774 * 183.75753 * 20 18 17 23 23 C 1.54475 * 101.83755 * 94.15913 * 22 20 18 24 24 N 1.46755 * 105.47569 * 25.22280 * 23 22 20 25 25 C 1.34423 * 111.30391 * 342.98239 * 24 23 22 26 26 O 1.21279 * 124.94593 * 180.36883 * 25 24 23 27 27 H 1.08997 * 109.46860 * 296.76062 * 1 2 3 28 28 H 1.09001 * 109.47000 * 56.76152 * 1 2 3 29 29 H 1.09000 * 109.46856 * 176.76489 * 1 2 3 30 30 H 1.09007 * 109.46849 * 183.23946 * 3 2 1 31 31 H 1.09000 * 109.47114 * 303.23768 * 3 2 1 32 32 H 1.08998 * 109.47309 * 63.24179 * 3 2 1 33 33 H 1.09003 * 109.88330 * 338.85921 * 4 2 1 34 34 H 1.08995 * 109.88767 * 99.86832 * 4 2 1 35 35 H 0.97001 * 120.00060 * 180.02562 * 9 8 6 36 36 H 1.09003 * 110.36301 * 265.28967 * 14 5 4 37 37 H 1.09003 * 110.36215 * 142.97081 * 14 5 4 38 38 H 0.96999 * 120.00142 * 272.80488 * 17 15 14 39 39 H 1.08994 * 109.47490 * 298.84261 * 21 20 18 40 40 H 1.08999 * 109.46937 * 58.84440 * 21 20 18 41 41 H 1.09007 * 109.47093 * 178.84176 * 21 20 18 42 42 H 1.08998 * 111.09746 * 335.93709 * 22 20 18 43 43 H 1.08998 * 110.80147 * 212.24648 * 22 20 18 44 44 H 1.09002 * 110.24437 * 266.21979 * 23 22 20 45 45 H 1.08997 * 110.24710 * 144.22687 * 23 22 20 46 46 H 0.97001 * 124.35408 * 163.00501 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0761 -0.7911 -1.2072 5 7 3.2446 -1.5506 -0.7390 6 6 4.0035 -2.3980 -1.5013 7 1 3.6112 -2.7872 -2.4292 8 6 5.2770 -2.7569 -1.0814 9 7 5.8309 -3.8630 -1.5310 10 14 6.2047 -1.6699 0.1216 11 1 5.7964 -2.0065 1.5091 12 1 7.6645 -1.8941 -0.0329 13 1 5.8907 -0.2451 -0.1549 14 6 3.4633 -1.2496 0.6876 15 6 2.0791 -0.7953 1.2138 16 1 2.1844 -0.1518 2.0872 17 7 1.2273 -1.9487 1.5145 18 6 1.2027 -2.4616 2.7607 19 8 1.8861 -1.9686 3.6329 20 6 0.3269 -3.6484 3.0698 21 6 0.7395 -4.8548 2.2242 22 6 0.3978 -3.9911 4.5744 23 6 -0.8180 -3.2190 5.1329 24 7 -1.7465 -3.0814 4.0047 25 6 -1.1282 -3.3086 2.8330 26 8 -1.6606 -3.2543 1.7446 27 1 -0.3633 0.4627 0.9176 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3633 -1.0260 -0.0580 30 1 3.1610 1.4063 -0.0581 31 1 1.6750 1.9701 -0.8595 32 1 1.7691 1.9344 0.9176 33 1 1.3131 -1.4758 -1.5775 34 1 2.3716 -0.1026 -1.9988 35 1 6.7207 -4.1140 -1.2373 36 1 4.1932 -0.4477 0.7985 37 1 3.7961 -2.1425 1.2169 38 1 0.6810 -2.3432 0.8168 39 1 0.6214 -4.6154 1.1675 40 1 1.7819 -5.1010 2.4267 41 1 0.1092 -5.7078 2.4762 42 1 1.3262 -3.6292 5.0160 43 1 0.2851 -5.0636 4.7328 44 1 -0.5093 -2.2363 5.4894 45 1 -1.2855 -3.7838 5.9395 46 1 -2.6856 -2.8553 4.0931 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975029140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:50 Heat of formation + Delta-G solvation = -45.311678 kcal Electronic energy + Delta-G solvation = -28005.103834 eV Core-core repulsion = 24316.282092 eV Total energy + Delta-G solvation = -3688.821742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30314 -39.51447 -38.04334 -36.42194 -34.00223 -33.50946 -32.83928 -31.27484 -29.05698 -28.30342 -26.93657 -26.10023 -25.56462 -23.68454 -22.28487 -21.66376 -20.66297 -19.54595 -18.69602 -17.61726 -17.38906 -16.69989 -16.09699 -15.58043 -15.24935 -15.11708 -14.44711 -14.25836 -13.95028 -13.85457 -13.78181 -13.60323 -13.20205 -13.02215 -12.76395 -12.56880 -12.37437 -12.30445 -12.22993 -12.02177 -11.62122 -11.55397 -11.45035 -11.26469 -11.08144 -10.73785 -10.61707 -10.25951 -10.19128 -10.11017 -10.01415 -9.61031 -9.43162 -9.34263 -8.81583 -8.52631 -7.00515 -5.92083 -3.21770 2.25067 2.68438 3.09326 3.39020 3.43056 3.51522 3.52411 4.05423 4.22427 4.55396 4.58149 4.75383 4.82195 4.89222 4.94707 5.14210 5.17745 5.18737 5.28256 5.47533 5.60416 5.61149 5.64690 5.70177 5.72287 5.83525 5.88748 5.92816 6.00236 6.13618 6.13966 6.18624 6.27249 6.41891 6.43497 6.49922 6.61170 6.64239 6.71561 6.80002 6.88452 7.69076 7.77074 7.99773 8.33687 8.36207 8.85852 9.71883 10.20470 11.23936 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.005512 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.200993 B = 5078.961633 C = 5782.951599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.131 4.131 4 C 0.142 3.858 5 N -0.605 5.605 6 C -0.239 4.239 7 H 0.092 0.908 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.877 3.123 11 H -0.284 1.284 12 H -0.303 1.303 13 H -0.277 1.277 14 C 0.105 3.895 15 C 0.137 3.863 16 H 0.095 0.905 17 N -0.693 5.693 18 C 0.535 3.465 19 O -0.538 6.538 20 C -0.118 4.118 21 C -0.129 4.129 22 C -0.119 4.119 23 C 0.100 3.900 24 N -0.729 5.729 25 C 0.533 3.467 26 O -0.517 6.517 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.408 0.592 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.293 3.084 12.876 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C -0.188 4.188 4 C 0.016 3.984 5 N -0.332 5.332 6 C -0.366 4.366 7 H 0.110 0.890 8 C -0.174 4.174 9 N -0.552 5.552 10 Si 0.708 3.292 11 H -0.211 1.211 12 H -0.231 1.231 13 H -0.202 1.202 14 C -0.021 4.021 15 C 0.032 3.968 16 H 0.113 0.887 17 N -0.343 5.343 18 C 0.319 3.681 19 O -0.416 6.416 20 C -0.125 4.125 21 C -0.187 4.187 22 C -0.157 4.157 23 C -0.024 4.024 24 N -0.385 5.385 25 C 0.317 3.683 26 O -0.392 6.392 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.245 0.755 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -14.767 3.279 12.806 19.819 hybrid contribution 0.105 0.454 0.419 0.626 sum -14.661 3.732 13.224 20.094 Atomic orbital electron populations 1.21709 0.93804 1.01985 1.01354 1.21886 0.95559 0.95716 0.95718 1.21724 1.01732 0.94031 1.01349 1.21486 0.90159 0.93039 0.93679 1.44739 1.32504 1.51185 1.04763 1.18613 0.94930 1.17894 1.05194 0.89022 1.24960 0.96799 0.97346 0.98336 1.69840 1.16682 1.21551 1.47123 0.87055 0.78755 0.82068 0.81349 1.21118 1.23054 1.20245 1.22331 0.93764 0.99149 0.86856 1.22211 0.91090 0.86483 0.97058 0.88694 1.45804 1.45195 1.32408 1.10879 1.19594 0.82240 0.83421 0.82856 1.90668 1.43523 1.60871 1.46530 1.21607 0.93832 0.97521 0.99553 1.21690 1.02766 0.94192 1.00069 1.22691 1.00161 1.01213 0.91590 1.22132 0.89972 1.01326 0.88962 1.46144 1.12974 1.71862 1.07532 1.20376 0.88128 0.75702 0.84064 1.90769 1.71182 1.51585 1.25617 0.92986 0.92371 0.92276 0.91922 0.92141 0.92889 0.94834 0.94729 0.92786 0.94843 0.91949 0.75502 0.90513 0.90414 0.91226 0.87088 0.89193 0.90543 0.89920 0.74985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.07 37.16 0.30 -1.49 16 2 C -0.09 -1.41 0.80 -152.67 -0.12 -1.53 16 3 C -0.13 -1.88 8.41 37.16 0.31 -1.57 16 4 C 0.14 2.77 6.41 -3.07 -0.02 2.75 16 5 N -0.61 -14.48 3.21 -170.08 -0.55 -15.02 16 6 C -0.24 -6.76 10.57 -15.06 -0.16 -6.92 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 8 C 0.02 0.71 5.43 -17.43 -0.09 0.61 16 9 N -0.91 -28.13 13.97 55.49 0.78 -27.35 16 10 Si 0.88 23.09 24.27 -169.99 -4.13 18.96 16 11 H -0.28 -7.41 6.49 56.52 0.37 -7.04 16 12 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 13 H -0.28 -7.13 6.66 56.52 0.38 -6.75 16 14 C 0.11 2.36 4.08 -2.53 -0.01 2.35 16 15 C 0.14 2.48 2.67 -65.79 -0.18 2.30 16 16 H 0.10 1.69 7.44 -51.93 -0.39 1.30 16 17 N -0.69 -11.80 4.41 -51.73 -0.23 -12.03 16 18 C 0.54 8.78 6.55 -10.98 -0.07 8.71 16 19 O -0.54 -9.98 15.08 5.56 0.08 -9.89 16 20 C -0.12 -1.54 0.74 -155.75 -0.12 -1.66 16 21 C -0.13 -1.67 8.33 37.15 0.31 -1.36 16 22 C -0.12 -1.16 6.04 -25.18 -0.15 -1.31 16 23 C 0.10 0.79 7.78 -3.13 -0.02 0.77 16 24 N -0.73 -6.88 6.24 -59.21 -0.37 -7.25 16 25 C 0.53 6.93 7.08 -10.85 -0.08 6.85 16 26 O -0.52 -8.22 17.69 5.56 0.10 -8.12 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.86 6.48 -51.93 -0.34 0.52 16 30 H 0.06 1.02 7.57 -51.92 -0.39 0.62 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.65 7.77 -51.93 -0.40 0.25 16 34 H 0.03 0.68 7.84 -51.93 -0.41 0.27 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.03 0.79 5.24 -51.93 -0.27 0.52 16 37 H 0.06 1.57 6.63 -51.93 -0.34 1.22 16 38 H 0.41 6.91 6.57 -40.82 -0.27 6.64 16 39 H 0.08 1.12 7.77 -51.93 -0.40 0.71 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 42 H 0.11 1.22 6.90 -51.93 -0.36 0.86 16 43 H 0.09 0.69 7.89 -51.93 -0.41 0.28 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.41 3.03 8.96 -40.82 -0.37 2.67 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -34.01 356.64 -6.39 -40.40 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.35 Total: 6.43 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.10 Total: 8.50 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.37 Total: -61.65 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.18 Total: -18.02 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.13 Total: 18.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.01 -6.39 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975029140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.914 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds