Wall clock time and date at job start Fri Apr 10 2020 18:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 110.77590 * 2 1 4 4 C 1.54318 * 110.72226 * 236.76187 * 2 1 3 5 5 N 1.47018 * 107.27291 * 219.44308 * 4 2 1 6 6 C 1.36937 * 125.65155 * 178.89424 * 5 4 2 7 7 H 1.07996 * 119.99912 * 341.56746 * 6 5 4 8 8 C 1.38819 * 119.99983 * 161.57244 * 6 5 4 9 9 N 1.31618 * 120.00106 * 157.60717 * 8 6 5 10 10 Si 1.86799 * 119.99870 * 337.59414 * 8 6 5 11 11 H 1.48499 * 109.46947 * 84.54637 * 10 8 6 12 12 H 1.48502 * 109.47088 * 204.54267 * 10 8 6 13 13 H 1.48500 * 109.47528 * 324.54425 * 10 8 6 14 14 C 1.47432 * 108.70065 * 358.93839 * 5 4 2 15 15 C 1.54900 * 104.83248 * 24.12746 * 14 5 4 16 16 H 1.08999 * 111.03785 * 204.90188 * 15 14 5 17 17 N 1.46504 * 111.00225 * 81.06566 * 15 14 5 18 18 C 1.34779 * 119.99827 * 92.80535 * 17 15 14 19 19 O 1.21278 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99778 * 180.02562 * 18 17 15 21 21 C 1.52994 * 110.54147 * 61.15307 * 20 18 17 22 22 C 1.54478 * 110.35774 * 183.75753 * 20 18 17 23 23 C 1.54475 * 101.83755 * 94.15913 * 22 20 18 24 24 N 1.46755 * 105.47569 * 25.22280 * 23 22 20 25 25 C 1.34423 * 111.30391 * 342.98239 * 24 23 22 26 26 O 1.21279 * 124.94593 * 180.36883 * 25 24 23 27 27 H 1.08997 * 109.46860 * 296.76062 * 1 2 3 28 28 H 1.09001 * 109.47000 * 56.76152 * 1 2 3 29 29 H 1.09000 * 109.46856 * 176.76489 * 1 2 3 30 30 H 1.09007 * 109.46849 * 183.23946 * 3 2 1 31 31 H 1.09000 * 109.47114 * 303.23768 * 3 2 1 32 32 H 1.08998 * 109.47309 * 63.24179 * 3 2 1 33 33 H 1.09003 * 109.88330 * 338.85921 * 4 2 1 34 34 H 1.08995 * 109.88767 * 99.86832 * 4 2 1 35 35 H 0.97001 * 120.00060 * 180.02562 * 9 8 6 36 36 H 1.09003 * 110.36301 * 265.28967 * 14 5 4 37 37 H 1.09003 * 110.36215 * 142.97081 * 14 5 4 38 38 H 0.96999 * 120.00142 * 272.80488 * 17 15 14 39 39 H 1.08994 * 109.47490 * 298.84261 * 21 20 18 40 40 H 1.08999 * 109.46937 * 58.84440 * 21 20 18 41 41 H 1.09007 * 109.47093 * 178.84176 * 21 20 18 42 42 H 1.08998 * 111.09746 * 335.93709 * 22 20 18 43 43 H 1.08998 * 110.80147 * 212.24648 * 22 20 18 44 44 H 1.09002 * 110.24437 * 266.21979 * 23 22 20 45 45 H 1.08997 * 110.24710 * 144.22687 * 23 22 20 46 46 H 0.97001 * 124.35408 * 163.00501 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0761 -0.7911 -1.2072 5 7 3.2446 -1.5506 -0.7390 6 6 4.0035 -2.3980 -1.5013 7 1 3.6112 -2.7872 -2.4292 8 6 5.2770 -2.7569 -1.0814 9 7 5.8309 -3.8630 -1.5310 10 14 6.2047 -1.6699 0.1216 11 1 5.7964 -2.0065 1.5091 12 1 7.6645 -1.8941 -0.0329 13 1 5.8907 -0.2451 -0.1549 14 6 3.4633 -1.2496 0.6876 15 6 2.0791 -0.7953 1.2138 16 1 2.1844 -0.1518 2.0872 17 7 1.2273 -1.9487 1.5145 18 6 1.2027 -2.4616 2.7607 19 8 1.8861 -1.9686 3.6329 20 6 0.3269 -3.6484 3.0698 21 6 0.7395 -4.8548 2.2242 22 6 0.3978 -3.9911 4.5744 23 6 -0.8180 -3.2190 5.1329 24 7 -1.7465 -3.0814 4.0047 25 6 -1.1282 -3.3086 2.8330 26 8 -1.6606 -3.2543 1.7446 27 1 -0.3633 0.4627 0.9176 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3633 -1.0260 -0.0580 30 1 3.1610 1.4063 -0.0581 31 1 1.6750 1.9701 -0.8595 32 1 1.7691 1.9344 0.9176 33 1 1.3131 -1.4758 -1.5775 34 1 2.3716 -0.1026 -1.9988 35 1 6.7207 -4.1140 -1.2373 36 1 4.1932 -0.4477 0.7985 37 1 3.7961 -2.1425 1.2169 38 1 0.6810 -2.3432 0.8168 39 1 0.6214 -4.6154 1.1675 40 1 1.7819 -5.1010 2.4267 41 1 0.1092 -5.7078 2.4762 42 1 1.3262 -3.6292 5.0160 43 1 0.2851 -5.0636 4.7328 44 1 -0.5093 -2.2363 5.4894 45 1 -1.2855 -3.7838 5.9395 46 1 -2.6856 -2.8553 4.0931 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975029140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:49 Heat of formation + Delta-G solvation = -72.123599 kcal Electronic energy + Delta-G solvation = -28006.266486 eV Core-core repulsion = 24316.282092 eV Total energy + Delta-G solvation = -3689.984394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.38259 -40.87301 -39.39648 -37.40558 -35.77357 -34.84588 -33.95354 -33.30956 -30.22544 -29.59340 -28.11710 -27.86768 -26.59468 -25.20463 -23.53862 -22.74664 -22.32081 -20.84742 -19.99359 -18.79616 -18.60382 -18.36158 -17.54633 -17.27406 -16.46826 -16.40555 -15.68470 -15.56232 -15.31422 -15.25776 -15.07088 -14.77406 -14.67998 -14.48114 -14.12132 -13.90828 -13.63479 -13.53131 -13.44706 -13.27486 -13.12732 -12.99965 -12.78712 -12.50572 -12.33629 -12.30732 -12.18422 -11.90822 -11.82667 -11.58800 -11.45498 -11.15801 -10.89222 -10.81841 -10.15470 -10.11484 -9.06120 -8.20934 -5.45807 1.17358 1.26646 1.31768 1.39347 1.46836 2.08985 2.36103 2.37359 2.99289 3.13213 3.28319 3.32224 3.38877 3.56906 3.71718 3.86345 3.93563 4.05640 4.22754 4.27297 4.37854 4.42933 4.57090 4.60441 4.65423 4.69948 4.75116 4.79209 4.83730 4.89413 5.00198 5.01372 5.06856 5.08137 5.09637 5.17473 5.26828 5.37029 5.48764 5.64593 5.69793 5.90825 6.07641 6.38511 6.72404 7.02357 7.12945 7.50989 8.07922 8.98722 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.005512 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.200993 B = 5078.961633 C = 5782.951599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.129 4.129 4 C 0.137 3.863 5 N -0.618 5.618 6 C -0.227 4.227 7 H 0.065 0.935 8 C -0.029 4.029 9 N -0.951 5.951 10 Si 0.935 3.065 11 H -0.284 1.284 12 H -0.305 1.305 13 H -0.267 1.267 14 C 0.104 3.896 15 C 0.145 3.855 16 H 0.104 0.896 17 N -0.696 5.696 18 C 0.529 3.471 19 O -0.561 6.561 20 C -0.120 4.120 21 C -0.128 4.128 22 C -0.117 4.117 23 C 0.102 3.898 24 N -0.712 5.712 25 C 0.530 3.470 26 O -0.552 6.552 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.408 0.592 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.075 0.925 45 H 0.124 0.876 46 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.585 4.518 15.064 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.075 4.075 3 C -0.186 4.186 4 C 0.012 3.988 5 N -0.344 5.344 6 C -0.356 4.356 7 H 0.082 0.918 8 C -0.224 4.224 9 N -0.598 5.598 10 Si 0.764 3.236 11 H -0.211 1.211 12 H -0.233 1.233 13 H -0.192 1.192 14 C -0.022 4.022 15 C 0.039 3.961 16 H 0.122 0.878 17 N -0.345 5.345 18 C 0.315 3.685 19 O -0.440 6.440 20 C -0.127 4.127 21 C -0.186 4.186 22 C -0.155 4.155 23 C -0.021 4.021 24 N -0.367 5.367 25 C 0.314 3.686 26 O -0.430 6.430 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.245 0.755 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.135 0.865 44 H 0.094 0.906 45 H 0.142 0.858 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -17.110 4.749 15.040 23.271 hybrid contribution 0.757 -0.034 -0.275 0.806 sum -16.353 4.715 14.765 22.532 Atomic orbital electron populations 1.21645 0.91378 1.01889 1.03050 1.21870 0.97256 0.95930 0.92444 1.21738 1.00314 0.92935 1.03619 1.21692 0.88455 0.93099 0.95508 1.44774 1.32909 1.51294 1.05444 1.18573 0.95096 1.17595 1.04324 0.91759 1.25488 0.97834 0.98358 1.00730 1.69947 1.17085 1.23190 1.49623 0.86127 0.77170 0.80849 0.79415 1.21133 1.23346 1.19191 1.22310 0.96572 0.97481 0.85801 1.22090 0.88914 0.87045 0.98041 0.87806 1.45867 1.44901 1.32381 1.11373 1.20224 0.82163 0.83896 0.82209 1.90648 1.44539 1.61798 1.47044 1.21650 0.93468 0.95673 1.01859 1.21674 1.02757 0.95363 0.98783 1.22777 1.00661 1.03188 0.88833 1.22311 0.89053 1.01719 0.89049 1.46095 1.13749 1.70045 1.06816 1.20333 0.87976 0.75822 0.84438 1.90752 1.71706 1.53432 1.27089 0.91567 0.90278 0.93378 0.94083 0.90022 0.90547 0.94812 0.94367 0.92956 0.95316 0.95265 0.75499 0.92851 0.91449 0.88543 0.88333 0.86540 0.90645 0.85807 0.73495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 8.07 71.98 0.58 -2.42 16 2 C -0.07 -2.23 0.80 -50.99 -0.04 -2.27 16 3 C -0.13 -3.32 8.41 71.98 0.61 -2.72 16 4 C 0.14 5.26 6.41 86.73 0.56 5.82 16 5 N -0.62 -29.96 3.21 -692.00 -2.22 -32.18 16 6 C -0.23 -13.26 10.57 84.04 0.89 -12.37 16 7 H 0.06 4.03 8.06 -2.91 -0.02 4.01 16 8 C -0.03 -1.77 5.43 84.86 0.46 -1.31 16 9 N -0.95 -61.04 13.97 21.65 0.30 -60.74 16 10 Si 0.93 49.07 24.27 68.60 1.66 50.73 16 11 H -0.28 -14.79 6.49 99.48 0.65 -14.14 16 12 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 13 H -0.27 -13.40 6.66 99.48 0.66 -12.73 16 14 C 0.10 4.72 4.08 86.85 0.35 5.07 16 15 C 0.15 5.12 2.67 46.38 0.12 5.24 16 16 H 0.10 3.53 7.44 -2.39 -0.02 3.51 16 17 N -0.70 -23.49 4.41 -435.97 -1.92 -25.41 16 18 C 0.53 17.12 6.55 87.66 0.57 17.70 16 19 O -0.56 -20.47 15.08 -3.02 -0.05 -20.52 16 20 C -0.12 -2.98 0.74 -52.99 -0.04 -3.02 16 21 C -0.13 -3.28 8.33 71.98 0.60 -2.68 16 22 C -0.12 -2.00 6.04 31.60 0.19 -1.80 16 23 C 0.10 1.23 7.78 86.83 0.68 1.91 16 24 N -0.71 -11.24 6.24 -459.82 -2.87 -14.11 16 25 C 0.53 12.87 7.08 87.90 0.62 13.49 16 26 O -0.55 -17.04 17.69 -3.03 -0.05 -17.10 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.31 6.48 -2.39 -0.02 1.29 16 30 H 0.04 1.24 7.57 -2.38 -0.02 1.22 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.03 1.30 7.77 -2.39 -0.02 1.28 16 34 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 35 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 36 H 0.03 1.35 5.24 -2.39 -0.01 1.34 16 37 H 0.03 1.50 6.63 -2.39 -0.02 1.49 16 38 H 0.41 13.87 6.57 -92.71 -0.61 13.26 16 39 H 0.05 1.60 7.77 -2.39 -0.02 1.58 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.10 1.91 8.13 -2.38 -0.02 1.89 16 42 H 0.10 2.00 6.90 -2.39 -0.02 1.98 16 43 H 0.12 1.37 7.89 -2.39 -0.02 1.35 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.42 4.84 8.96 -92.71 -0.83 4.01 16 Total: -1.00 -76.63 356.64 0.46 -76.16 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.55 Total: 22.52 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 6.15 Total: 20.64 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -6.71 Total: -132.45 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.10 Total: -37.61 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 1.66 Total: 50.73 kcal Total: -76.63 0.46 -76.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975029140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.038 kcal (2) G-P(sol) polarization free energy of solvation -76.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds