Wall clock time and date at job start Fri Apr 10 2020 18:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.91872 * 2 1 4 4 C 1.54901 * 111.00423 * 236.09507 * 2 1 3 5 5 N 1.47426 * 104.83400 * 278.93571 * 4 2 1 6 6 C 1.36940 * 125.64992 * 155.83232 * 5 4 2 7 7 H 1.07996 * 119.99961 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00006 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99738 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46907 * 90.00404 * 10 8 6 12 12 H 1.48502 * 109.46516 * 209.99975 * 10 8 6 13 13 H 1.48496 * 109.47107 * 329.99862 * 10 8 6 14 14 C 1.47019 * 108.70376 * 335.87327 * 5 4 2 15 15 C 1.54330 * 107.26866 * 1.05523 * 14 5 4 16 16 H 1.09002 * 110.71679 * 140.55640 * 15 14 5 17 17 N 1.46496 * 110.72205 * 263.82860 * 15 14 5 18 18 C 1.34773 * 119.99927 * 268.52730 * 17 15 14 19 19 O 1.21282 * 120.00651 * 359.97438 * 18 17 15 20 20 C 1.50704 * 119.99790 * 179.97438 * 18 17 15 21 21 C 1.53004 * 110.43408 * 57.45754 * 20 18 17 22 22 C 1.54630 * 110.48746 * 179.97438 * 20 18 17 23 23 C 1.54483 * 101.76158 * 93.88305 * 22 20 18 24 24 N 1.46759 * 105.47327 * 25.41538 * 23 22 20 25 25 C 1.34421 * 111.30256 * 342.98381 * 24 23 22 26 26 O 1.21277 * 124.93939 * 180.40337 * 25 24 23 27 27 H 1.09009 * 109.47319 * 296.10302 * 1 2 3 28 28 H 1.09001 * 109.46801 * 56.09854 * 1 2 3 29 29 H 1.08995 * 109.47179 * 176.10172 * 1 2 3 30 30 H 1.08995 * 109.47378 * 183.90320 * 3 2 1 31 31 H 1.08999 * 109.46808 * 303.90383 * 3 2 1 32 32 H 1.09003 * 109.47287 * 63.89824 * 3 2 1 33 33 H 1.09004 * 110.36831 * 37.77381 * 4 2 1 34 34 H 1.08999 * 110.37045 * 160.09791 * 4 2 1 35 35 H 0.96999 * 119.99772 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.88042 * 241.64152 * 14 5 4 37 37 H 1.08996 * 109.88551 * 120.47294 * 14 5 4 38 38 H 0.96999 * 119.99993 * 88.52149 * 17 15 14 39 39 H 1.08994 * 109.47420 * 60.69880 * 21 20 18 40 40 H 1.09001 * 109.47095 * 180.70012 * 21 20 18 41 41 H 1.09000 * 109.46734 * 300.69967 * 21 20 18 42 42 H 1.09000 * 110.97075 * 211.99816 * 22 20 18 43 43 H 1.08996 * 110.97221 * 335.76698 * 22 20 18 44 44 H 1.08995 * 110.24840 * 144.41619 * 23 22 20 45 45 H 1.09008 * 110.24417 * 266.32901 * 23 22 20 46 46 H 0.97003 * 124.35063 * 162.98235 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4292 0.0000 4 6 2.0852 -0.8066 -1.2002 5 7 2.0138 -2.2159 -0.7732 6 6 1.9445 -3.3000 -1.6070 7 1 1.9394 -3.1583 -2.6776 8 6 1.8809 -4.5810 -1.0761 9 7 1.8867 -4.7536 0.2287 10 14 1.7871 -6.0598 -2.2135 11 1 3.1601 -6.5279 -2.5311 12 1 1.0342 -7.1514 -1.5450 13 1 1.0922 -5.6757 -3.4685 14 6 2.0284 -2.2646 0.6961 15 6 2.0861 -0.8078 1.2023 16 1 1.4523 -0.6791 2.0797 17 7 3.4666 -0.4155 1.4963 18 6 3.9653 -0.5840 2.7370 19 8 3.2712 -1.0600 3.6102 20 6 5.3857 -0.1810 3.0393 21 6 5.6006 1.2995 2.7185 22 6 5.7264 -0.4684 4.5199 23 6 6.3629 -1.8731 4.4296 24 7 6.8930 -1.9758 3.0650 25 6 6.3571 -1.0410 2.2613 26 8 6.6149 -0.9066 1.0839 27 1 -0.3634 0.4522 0.9229 28 1 -0.3633 0.5732 -0.8530 29 1 -0.3633 -1.0252 -0.0699 30 1 3.1636 1.4025 -0.0699 31 1 1.6705 1.9732 -0.8529 32 1 1.7837 1.9300 0.9229 33 1 1.4671 -0.6462 -2.0836 34 1 3.1182 -0.5234 -1.4024 35 1 1.8418 -5.6487 0.5997 36 1 2.9062 -2.8116 1.0402 37 1 1.1218 -2.7479 1.0601 38 1 4.0217 -0.0346 0.7980 39 1 4.9330 1.9048 3.3315 40 1 6.6347 1.5709 2.9308 41 1 5.3873 1.4775 1.6645 42 1 6.4408 0.2596 4.9042 43 1 4.8241 -0.4876 5.1312 44 1 7.1700 -1.9689 5.1559 45 1 5.6084 -2.6409 4.6015 46 1 7.5461 -2.6337 2.7796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975029149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:16 Heat of formation + Delta-G solvation = -46.575091 kcal Electronic energy + Delta-G solvation = -27896.315613 eV Core-core repulsion = 24207.439086 eV Total energy + Delta-G solvation = -3688.876528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -41.13148 -39.23112 -37.78022 -36.22283 -33.90779 -33.36625 -32.66455 -30.64553 -28.91935 -27.94497 -26.79361 -25.62131 -25.48458 -23.67080 -22.26394 -21.51778 -20.11107 -19.36519 -18.51336 -17.41759 -17.25385 -16.64559 -15.80751 -15.30487 -15.15307 -14.60087 -14.27789 -13.94405 -13.85886 -13.83889 -13.68353 -13.53122 -13.15600 -12.72876 -12.52999 -12.46113 -12.29236 -12.00697 -11.92448 -11.66052 -11.46393 -11.34925 -11.21389 -11.02459 -10.93674 -10.73805 -10.35380 -10.22744 -9.98412 -9.88395 -9.82990 -9.59387 -9.45023 -9.11523 -8.58912 -8.41695 -6.76896 -5.64329 -2.98203 2.40970 2.91621 3.33280 3.43746 3.48312 3.50350 3.55134 4.16805 4.33016 4.54526 4.62504 4.92597 4.94920 5.01671 5.21620 5.32197 5.35508 5.41223 5.52939 5.54087 5.58709 5.68718 5.77412 5.85300 5.90776 5.96256 5.97125 6.06732 6.19368 6.23560 6.28799 6.42666 6.61573 6.68473 6.71134 6.72219 6.76864 6.95317 6.99911 7.59006 7.67112 7.84995 7.93893 8.21111 8.30577 8.53905 9.27260 9.88145 10.53832 11.46610 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.005524 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.615683 B = 5067.939253 C = 6243.994035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.226 4.226 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.920 5.920 10 Si 0.910 3.090 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.177 3.823 15 C 0.122 3.878 16 H 0.090 0.910 17 N -0.697 5.697 18 C 0.533 3.467 19 O -0.534 6.534 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.116 4.116 23 C 0.099 3.901 24 N -0.727 5.727 25 C 0.533 3.467 26 O -0.515 6.515 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.017 0.983 35 H 0.251 0.749 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.401 0.599 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.129 13.191 9.028 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.016 3.984 5 N -0.328 5.328 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.567 5.567 10 Si 0.741 3.259 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.052 3.948 15 C 0.017 3.983 16 H 0.108 0.892 17 N -0.347 5.347 18 C 0.317 3.683 19 O -0.411 6.411 20 C -0.128 4.128 21 C -0.184 4.184 22 C -0.154 4.154 23 C -0.025 4.025 24 N -0.383 5.383 25 C 0.317 3.683 26 O -0.390 6.390 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.034 0.966 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.237 0.763 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.127 0.873 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 6.640 12.748 9.063 16.992 hybrid contribution 0.641 -1.167 -0.980 1.654 sum 7.281 11.581 8.082 15.889 Atomic orbital electron populations 1.21592 0.93246 1.02926 1.00482 1.22013 0.96324 0.94178 0.96599 1.21679 1.00356 0.95544 1.01300 1.21650 0.96676 0.85743 0.94315 1.44413 1.86846 0.99740 1.01781 1.19031 1.43457 0.84017 0.88915 0.90491 1.24795 1.02380 0.97335 0.95955 1.69963 1.56989 1.20637 1.09148 0.86140 0.77468 0.82741 0.79542 1.21760 1.21745 1.20715 1.21494 1.01423 0.88402 0.83497 1.22545 0.80857 0.97711 0.97192 0.89161 1.45973 1.14885 1.62987 1.10854 1.19515 0.87137 0.78619 0.83067 1.90682 1.59882 1.44393 1.46165 1.21639 0.94285 0.98562 0.98264 1.21657 1.02822 0.90812 1.03134 1.22675 1.02857 0.96039 0.93793 1.22124 0.98855 0.98429 0.83088 1.46098 1.45539 1.34820 1.11847 1.20271 0.80721 0.81096 0.86225 1.90780 1.63021 1.70990 1.14216 0.93360 0.92877 0.91203 0.93022 0.92617 0.92856 0.94058 0.96565 0.93837 0.93660 0.92816 0.76276 0.90874 0.91261 0.91080 0.89461 0.87289 0.90070 0.90243 0.74841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 8.57 37.16 0.32 -1.70 16 2 C -0.09 -1.54 0.83 -152.36 -0.13 -1.67 16 3 C -0.13 -1.77 8.22 37.16 0.31 -1.46 16 4 C 0.14 2.97 6.12 -2.53 -0.02 2.95 16 5 N -0.60 -15.53 3.38 -170.07 -0.57 -16.11 16 6 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.91 10.31 55.49 0.57 -27.34 16 10 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.18 4.48 4.79 -3.06 -0.01 4.46 16 15 C 0.12 2.39 2.59 -66.09 -0.17 2.22 16 16 H 0.09 1.79 7.46 -51.93 -0.39 1.41 16 17 N -0.70 -12.38 4.33 -52.03 -0.23 -12.61 16 18 C 0.53 9.16 6.55 -10.98 -0.07 9.09 16 19 O -0.53 -10.55 15.12 5.56 0.08 -10.46 16 20 C -0.12 -1.61 0.75 -155.67 -0.12 -1.72 16 21 C -0.13 -1.32 8.30 37.16 0.31 -1.01 16 22 C -0.12 -1.18 6.02 -25.10 -0.15 -1.34 16 23 C 0.10 1.02 7.78 -3.12 -0.02 0.99 16 24 N -0.73 -9.19 6.24 -59.20 -0.37 -9.56 16 25 C 0.53 8.29 7.15 -10.86 -0.08 8.22 16 26 O -0.52 -9.81 17.87 5.56 0.10 -9.71 16 27 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.34 7.91 -51.93 -0.41 0.92 16 30 H 0.05 0.68 6.48 -51.93 -0.34 0.34 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 34 H 0.02 0.35 7.98 -51.93 -0.41 -0.07 16 35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.05 1.33 7.41 -51.93 -0.38 0.94 16 37 H 0.05 1.51 7.38 -51.93 -0.38 1.13 16 38 H 0.40 6.89 6.44 -40.82 -0.26 6.63 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.79 7.49 -51.93 -0.39 0.40 16 42 H 0.09 0.64 7.91 -51.93 -0.41 0.23 16 43 H 0.11 1.20 6.96 -51.93 -0.36 0.84 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 46 H 0.41 4.59 8.96 -40.82 -0.37 4.23 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -34.80 363.28 -7.50 -42.30 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.45 Total: 8.16 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -0.09 Total: 12.10 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: -0.60 Total: -65.62 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.18 Total: -20.18 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.80 -7.50 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975029149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.273 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds