Wall clock time and date at job start Fri Apr 10 2020 18:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.91872 * 2 1 4 4 C 1.54901 * 111.00423 * 236.09507 * 2 1 3 5 5 N 1.47426 * 104.83400 * 278.93571 * 4 2 1 6 6 C 1.36940 * 125.64992 * 155.83232 * 5 4 2 7 7 H 1.07996 * 119.99961 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00006 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99738 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46907 * 90.00404 * 10 8 6 12 12 H 1.48502 * 109.46516 * 209.99975 * 10 8 6 13 13 H 1.48496 * 109.47107 * 329.99862 * 10 8 6 14 14 C 1.47019 * 108.70376 * 335.87327 * 5 4 2 15 15 C 1.54330 * 107.26866 * 1.05523 * 14 5 4 16 16 H 1.09002 * 110.71679 * 140.55640 * 15 14 5 17 17 N 1.46496 * 110.72205 * 263.82860 * 15 14 5 18 18 C 1.34773 * 119.99927 * 268.52730 * 17 15 14 19 19 O 1.21282 * 120.00651 * 359.97438 * 18 17 15 20 20 C 1.50704 * 119.99790 * 179.97438 * 18 17 15 21 21 C 1.53004 * 110.43408 * 57.45754 * 20 18 17 22 22 C 1.54630 * 110.48746 * 179.97438 * 20 18 17 23 23 C 1.54483 * 101.76158 * 93.88305 * 22 20 18 24 24 N 1.46759 * 105.47327 * 25.41538 * 23 22 20 25 25 C 1.34421 * 111.30256 * 342.98381 * 24 23 22 26 26 O 1.21277 * 124.93939 * 180.40337 * 25 24 23 27 27 H 1.09009 * 109.47319 * 296.10302 * 1 2 3 28 28 H 1.09001 * 109.46801 * 56.09854 * 1 2 3 29 29 H 1.08995 * 109.47179 * 176.10172 * 1 2 3 30 30 H 1.08995 * 109.47378 * 183.90320 * 3 2 1 31 31 H 1.08999 * 109.46808 * 303.90383 * 3 2 1 32 32 H 1.09003 * 109.47287 * 63.89824 * 3 2 1 33 33 H 1.09004 * 110.36831 * 37.77381 * 4 2 1 34 34 H 1.08999 * 110.37045 * 160.09791 * 4 2 1 35 35 H 0.96999 * 119.99772 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.88042 * 241.64152 * 14 5 4 37 37 H 1.08996 * 109.88551 * 120.47294 * 14 5 4 38 38 H 0.96999 * 119.99993 * 88.52149 * 17 15 14 39 39 H 1.08994 * 109.47420 * 60.69880 * 21 20 18 40 40 H 1.09001 * 109.47095 * 180.70012 * 21 20 18 41 41 H 1.09000 * 109.46734 * 300.69967 * 21 20 18 42 42 H 1.09000 * 110.97075 * 211.99816 * 22 20 18 43 43 H 1.08996 * 110.97221 * 335.76698 * 22 20 18 44 44 H 1.08995 * 110.24840 * 144.41619 * 23 22 20 45 45 H 1.09008 * 110.24417 * 266.32901 * 23 22 20 46 46 H 0.97003 * 124.35063 * 162.98235 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4292 0.0000 4 6 2.0852 -0.8066 -1.2002 5 7 2.0138 -2.2159 -0.7732 6 6 1.9445 -3.3000 -1.6070 7 1 1.9394 -3.1583 -2.6776 8 6 1.8809 -4.5810 -1.0761 9 7 1.8867 -4.7536 0.2287 10 14 1.7871 -6.0598 -2.2135 11 1 3.1601 -6.5279 -2.5311 12 1 1.0342 -7.1514 -1.5450 13 1 1.0922 -5.6757 -3.4685 14 6 2.0284 -2.2646 0.6961 15 6 2.0861 -0.8078 1.2023 16 1 1.4523 -0.6791 2.0797 17 7 3.4666 -0.4155 1.4963 18 6 3.9653 -0.5840 2.7370 19 8 3.2712 -1.0600 3.6102 20 6 5.3857 -0.1810 3.0393 21 6 5.6006 1.2995 2.7185 22 6 5.7264 -0.4684 4.5199 23 6 6.3629 -1.8731 4.4296 24 7 6.8930 -1.9758 3.0650 25 6 6.3571 -1.0410 2.2613 26 8 6.6149 -0.9066 1.0839 27 1 -0.3634 0.4522 0.9229 28 1 -0.3633 0.5732 -0.8530 29 1 -0.3633 -1.0252 -0.0699 30 1 3.1636 1.4025 -0.0699 31 1 1.6705 1.9732 -0.8529 32 1 1.7837 1.9300 0.9229 33 1 1.4671 -0.6462 -2.0836 34 1 3.1182 -0.5234 -1.4024 35 1 1.8418 -5.6487 0.5997 36 1 2.9062 -2.8116 1.0402 37 1 1.1218 -2.7479 1.0601 38 1 4.0217 -0.0346 0.7980 39 1 4.9330 1.9048 3.3315 40 1 6.6347 1.5709 2.9308 41 1 5.3873 1.4775 1.6645 42 1 6.4408 0.2596 4.9042 43 1 4.8241 -0.4876 5.1312 44 1 7.1700 -1.9689 5.1559 45 1 5.6084 -2.6409 4.6015 46 1 7.5461 -2.6337 2.7796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975029149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:13 Heat of formation + Delta-G solvation = -73.452756 kcal Electronic energy + Delta-G solvation = -27897.481116 eV Core-core repulsion = 24207.439086 eV Total energy + Delta-G solvation = -3690.042031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = -0.40 seconds Orbital eigenvalues (eV) -42.32575 -40.71425 -39.27793 -37.40655 -35.73040 -34.76985 -33.88793 -32.63294 -30.10060 -29.44521 -28.07353 -27.46108 -26.51661 -25.33308 -23.54893 -22.68052 -21.96444 -20.76168 -19.90952 -18.73097 -18.61102 -18.36721 -17.36690 -16.80227 -16.48008 -16.19086 -15.68280 -15.51530 -15.50340 -15.02748 -14.88440 -14.78230 -14.59494 -14.04932 -13.82606 -13.57331 -13.48117 -13.37874 -13.18834 -13.15823 -12.97141 -12.85541 -12.70046 -12.59918 -12.32489 -12.17381 -12.10048 -11.88726 -11.77316 -11.55450 -11.33653 -11.13547 -10.84888 -10.72844 -10.16724 -10.02120 -8.92140 -7.86498 -5.22890 1.14000 1.40169 1.42953 1.51592 1.61746 2.17118 2.35394 2.46321 3.17473 3.31321 3.35078 3.45836 3.63415 3.70940 3.90500 3.94433 4.05883 4.09720 4.37750 4.38571 4.50377 4.65108 4.66829 4.74533 4.76824 4.84258 4.85366 4.93500 4.99113 5.03915 5.11053 5.11782 5.15643 5.16849 5.28039 5.33301 5.42174 5.55360 5.66674 5.69479 5.70697 5.89025 6.14594 6.47395 7.05107 7.07731 7.14861 7.74675 8.39284 9.22859 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.005524 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.615683 B = 5067.939253 C = 6243.994035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.136 3.864 5 N -0.619 5.619 6 C -0.238 4.238 7 H 0.085 0.915 8 C -0.070 4.070 9 N -0.953 5.953 10 Si 0.978 3.022 11 H -0.290 1.290 12 H -0.294 1.294 13 H -0.264 1.264 14 C 0.196 3.804 15 C 0.134 3.866 16 H 0.088 0.912 17 N -0.695 5.695 18 C 0.527 3.473 19 O -0.564 6.564 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.108 4.108 23 C 0.094 3.906 24 N -0.722 5.722 25 C 0.519 3.481 26 O -0.560 6.560 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.030 0.970 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.019 0.981 35 H 0.243 0.757 36 H -0.008 1.008 37 H 0.010 0.990 38 H 0.406 0.594 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.058 0.942 46 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.934 15.841 9.293 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.076 4.076 3 C -0.181 4.181 4 C 0.011 3.989 5 N -0.345 5.345 6 C -0.367 4.367 7 H 0.102 0.898 8 C -0.263 4.263 9 N -0.602 5.602 10 Si 0.807 3.193 11 H -0.218 1.218 12 H -0.221 1.221 13 H -0.188 1.188 14 C 0.070 3.930 15 C 0.029 3.971 16 H 0.106 0.894 17 N -0.345 5.345 18 C 0.312 3.688 19 O -0.443 6.443 20 C -0.123 4.123 21 C -0.182 4.182 22 C -0.146 4.146 23 C -0.029 4.029 24 N -0.376 5.376 25 C 0.304 3.696 26 O -0.439 6.439 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.053 0.947 36 H 0.010 0.990 37 H 0.028 0.972 38 H 0.242 0.758 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.120 0.880 44 H 0.144 0.856 45 H 0.076 0.924 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 7.463 15.431 9.334 19.517 hybrid contribution 0.405 -2.044 -1.049 2.333 sum 7.867 13.387 8.285 17.600 Atomic orbital electron populations 1.21578 0.92297 1.01142 1.02857 1.21995 0.96981 0.95794 0.92817 1.21645 1.00538 0.92491 1.03390 1.21889 0.97117 0.83595 0.96264 1.44673 1.86487 1.01515 1.01867 1.19478 1.42320 0.85178 0.89735 0.89761 1.25688 1.02868 1.00322 0.97411 1.70232 1.58461 1.20455 1.11035 0.85073 0.77234 0.78884 0.78142 1.21765 1.22099 1.18827 1.21063 0.96855 0.91484 0.83620 1.22184 0.82417 0.94559 0.97981 0.89366 1.45912 1.14152 1.62938 1.11501 1.20280 0.88683 0.77518 0.82288 1.90665 1.61264 1.45462 1.46953 1.21708 0.90488 1.00081 1.00004 1.21732 1.04807 0.88576 1.03040 1.22795 1.03589 0.96816 0.91407 1.22359 0.99895 0.98076 0.82579 1.46239 1.44827 1.33884 1.12660 1.20754 0.81052 0.81806 0.85970 1.90744 1.64685 1.72401 1.16048 0.91123 0.90300 0.95099 0.92678 0.90265 0.90962 0.93182 0.96354 0.94744 0.98987 0.97166 0.75755 0.88853 0.88988 0.91975 0.85277 0.87967 0.85587 0.92402 0.74267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 8.57 71.98 0.62 -3.14 16 2 C -0.07 -2.47 0.83 -50.79 -0.04 -2.51 16 3 C -0.12 -2.91 8.22 71.98 0.59 -2.32 16 4 C 0.14 5.64 6.12 86.85 0.53 6.18 16 5 N -0.62 -33.20 3.38 -691.99 -2.34 -35.54 16 6 C -0.24 -13.96 10.28 84.03 0.86 -13.10 16 7 H 0.08 4.69 7.83 -2.91 -0.02 4.67 16 8 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 9 N -0.95 -61.18 10.31 21.65 0.22 -60.96 16 10 Si 0.98 48.21 29.55 68.60 2.03 50.24 16 11 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 12 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 13 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 14 C 0.20 10.54 4.79 86.73 0.42 10.95 16 15 C 0.13 5.39 2.59 46.18 0.12 5.51 16 16 H 0.09 3.59 7.46 -2.39 -0.02 3.57 16 17 N -0.70 -24.90 4.33 -436.91 -1.89 -26.79 16 18 C 0.53 18.17 6.55 87.66 0.57 18.74 16 19 O -0.56 -22.77 15.12 -3.04 -0.05 -22.81 16 20 C -0.12 -2.94 0.75 -52.93 -0.04 -2.98 16 21 C -0.12 -2.24 8.30 71.98 0.60 -1.64 16 22 C -0.11 -1.94 6.02 31.65 0.19 -1.75 16 23 C 0.09 1.76 7.78 86.83 0.68 2.44 16 24 N -0.72 -17.76 6.24 -459.81 -2.87 -20.63 16 25 C 0.52 16.01 7.15 87.90 0.63 16.64 16 26 O -0.56 -21.65 17.87 -3.02 -0.05 -21.71 16 27 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.03 1.18 7.91 -2.39 -0.02 1.16 16 30 H 0.05 1.28 6.48 -2.39 -0.02 1.27 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.98 8.05 -2.38 -0.02 1.96 16 34 H 0.02 0.77 7.98 -2.39 -0.02 0.75 16 35 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 36 H -0.01 -0.51 7.41 -2.39 -0.02 -0.53 16 37 H 0.01 0.63 7.38 -2.39 -0.02 0.61 16 38 H 0.41 13.88 6.44 -92.71 -0.60 13.28 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.25 7.49 -2.39 -0.02 1.23 16 42 H 0.13 1.28 7.91 -2.39 -0.02 1.26 16 43 H 0.10 2.06 6.96 -2.39 -0.02 2.04 16 44 H 0.13 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16 46 H 0.42 9.17 8.96 -92.71 -0.83 8.34 16 Total: -1.00 -82.33 363.28 0.81 -81.53 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -0.44 Total: 27.40 kcal Atomic # 6 Polarization: 23.07 SS G_CDS: 6.19 Total: 29.26 kcal Atomic # 7 Polarization: -137.04 SS G_CDS: -6.88 Total: -143.91 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.10 Total: -44.52 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -82.33 0.81 -81.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975029149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.076 kcal (2) G-P(sol) polarization free energy of solvation -82.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.40 seconds