Wall clock time and date at job start Fri Apr 10 2020 18:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.88739 * 2 1 4 4 C 1.54914 * 111.00263 * 123.87742 * 2 1 3 5 5 N 1.47426 * 104.82992 * 81.06932 * 4 2 1 6 6 C 1.36936 * 125.64483 * 204.16378 * 5 4 2 7 7 H 1.08004 * 120.00405 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00093 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99909 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00506 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47109 * 60.00305 * 10 8 6 12 12 H 1.48499 * 109.47578 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47363 * 300.00729 * 10 8 6 14 14 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 15 15 C 1.54325 * 107.40412 * 358.86539 * 14 5 4 16 16 H 1.09002 * 110.72265 * 219.52294 * 15 14 5 17 17 N 1.46501 * 110.72113 * 96.24493 * 15 14 5 18 18 C 1.34773 * 119.99782 * 86.45299 * 17 15 14 19 19 O 1.21280 * 120.00408 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99682 * 179.97438 * 18 17 15 21 21 C 1.53005 * 109.46991 * 180.02562 * 20 18 17 22 22 H 1.09004 * 110.21273 * 304.52216 * 21 20 18 23 23 C 1.54481 * 110.24663 * 182.50396 * 21 20 18 24 24 C 1.54629 * 101.76379 * 266.41271 * 23 21 20 25 25 C 1.51279 * 104.19458 * 335.20106 * 24 23 21 26 26 O 1.21287 * 124.94437 * 196.22989 * 25 24 23 27 27 N 1.34422 * 110.11785 * 16.25676 * 25 24 23 28 28 H 1.08998 * 109.47124 * 297.57088 * 1 2 3 29 29 H 1.09000 * 109.46711 * 57.57440 * 1 2 3 30 30 H 1.08996 * 109.47179 * 177.57339 * 1 2 3 31 31 H 1.08997 * 109.47394 * 182.42099 * 3 2 1 32 32 H 1.08994 * 109.47153 * 302.42597 * 3 2 1 33 33 H 1.09004 * 109.47185 * 62.42577 * 3 2 1 34 34 H 1.08999 * 110.37121 * 322.22667 * 4 2 1 35 35 H 1.09001 * 110.45739 * 199.95279 * 4 2 1 36 36 H 0.96997 * 120.00493 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.88241 * 118.36067 * 14 5 4 38 38 H 1.09000 * 109.88049 * 239.37196 * 14 5 4 39 39 H 0.97002 * 119.99754 * 266.45742 * 17 15 14 40 40 H 1.09000 * 109.47622 * 300.00278 * 20 18 17 41 41 H 1.08989 * 109.47257 * 60.00481 * 20 18 17 42 42 H 1.08999 * 110.96506 * 24.53293 * 23 21 20 43 43 H 1.09006 * 110.96624 * 148.29080 * 23 21 20 44 44 H 1.08998 * 110.48138 * 216.52533 * 24 23 21 45 45 H 1.08991 * 110.48472 * 93.87964 * 24 23 21 46 46 H 0.97006 * 124.34963 * 180.43035 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0852 -0.8062 1.2007 5 7 2.0139 -2.2156 0.7742 6 6 1.9447 -3.2992 1.6085 7 1 1.9395 -3.1571 2.6792 8 6 1.8811 -4.5805 1.0782 9 7 1.8879 -4.7538 -0.2266 10 14 1.7873 -6.0588 2.2162 11 1 0.5685 -5.9585 3.0587 12 1 1.7296 -7.3031 1.4077 13 1 2.9897 -6.0902 3.0870 14 6 2.0286 -2.2649 -0.6951 15 6 2.0842 -0.8095 -1.2052 16 1 1.4491 -0.6836 -2.0821 17 7 3.4640 -0.4167 -1.5021 18 6 3.9940 -0.6802 -2.7129 19 8 3.3285 -1.2421 -3.5569 20 6 5.4131 -0.2756 -3.0185 21 6 5.7639 -0.6874 -4.4497 22 1 5.5915 -1.7548 -4.5875 23 6 7.2359 -0.3372 -4.7612 24 6 7.0973 1.0601 -5.4088 25 6 5.6886 1.0755 -5.9599 26 8 5.2714 1.8674 -6.7783 27 7 4.9662 0.0841 -5.4101 28 1 -0.3633 0.4756 0.9109 29 1 -0.3633 0.5511 -0.8675 30 1 -0.3633 -1.0267 -0.0435 31 1 3.1643 1.4029 -0.0434 32 1 1.6902 1.9653 -0.8674 33 1 1.7606 1.9385 0.9110 34 1 1.4672 -0.6453 2.0840 35 1 3.1180 -0.5233 1.4046 36 1 1.8431 -5.6491 -0.5972 37 1 2.9064 -2.8120 -1.0389 38 1 1.1232 -2.7508 -1.0587 39 1 3.9961 0.0330 -0.8272 40 1 5.5128 0.8051 -2.9169 41 1 6.0899 -0.7699 -2.3217 42 1 7.8267 -0.2864 -3.8466 43 1 7.6667 -1.0515 -5.4629 44 1 7.8229 1.1814 -6.2131 45 1 7.2224 1.8418 -4.6597 46 1 4.0372 -0.0983 -5.6214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977321524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:34 Heat of formation + Delta-G solvation = -53.598382 kcal Electronic energy + Delta-G solvation = -26763.163555 eV Core-core repulsion = 23073.982475 eV Total energy + Delta-G solvation = -3689.181080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.68675 -39.59420 -38.00436 -36.52160 -33.91344 -33.04921 -31.40626 -30.92244 -30.68750 -28.12330 -26.92729 -25.74237 -25.56911 -23.38129 -21.54251 -20.71335 -20.36989 -19.84596 -18.73793 -17.57757 -16.87866 -16.67415 -16.14016 -15.70410 -15.45458 -14.76932 -14.47431 -14.08335 -13.96087 -13.83897 -13.73386 -13.35170 -13.31668 -12.94772 -12.82467 -12.53014 -12.28835 -12.04273 -11.88606 -11.71761 -11.48934 -11.37706 -11.18392 -11.10825 -11.01347 -10.78693 -10.42267 -10.28792 -10.02808 -9.95109 -9.91308 -9.67227 -9.53492 -9.17685 -8.65346 -8.48233 -6.85224 -5.71300 -3.06334 2.52287 2.94360 3.35693 3.38503 3.42957 3.44888 3.45107 4.19827 4.27358 4.47654 4.48324 4.79143 4.87254 4.93008 5.12913 5.18765 5.24771 5.26538 5.39646 5.41858 5.50702 5.58564 5.61036 5.62478 5.76543 5.80159 5.87110 5.99762 6.13086 6.16314 6.20605 6.36058 6.55027 6.57629 6.64296 6.70041 6.78667 6.92020 7.06038 7.52613 7.61202 7.79044 7.90101 8.21795 8.23690 8.56321 9.19924 9.80570 10.45920 11.39074 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.003698 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.024283 B = 7570.157238 C = 8582.614247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.232 4.232 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.177 3.823 15 C 0.124 3.876 16 H 0.086 0.914 17 N -0.709 5.709 18 C 0.513 3.487 19 O -0.543 6.543 20 C -0.156 4.156 21 C 0.146 3.854 22 H 0.100 0.900 23 C -0.129 4.129 24 C -0.158 4.158 25 C 0.514 3.486 26 O -0.545 6.545 27 N -0.713 5.713 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.015 0.985 36 H 0.253 0.747 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.395 0.605 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.606 12.027 -4.134 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.051 3.949 15 C 0.019 3.981 16 H 0.104 0.896 17 N -0.360 5.360 18 C 0.298 3.702 19 O -0.421 6.421 20 C -0.197 4.197 21 C 0.040 3.960 22 H 0.118 0.882 23 C -0.167 4.167 24 C -0.198 4.198 25 C 0.300 3.700 26 O -0.422 6.422 27 N -0.369 5.369 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.230 0.770 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 8.996 11.794 -5.166 15.707 hybrid contribution -0.176 -0.824 1.059 1.354 sum 8.820 10.970 -4.107 14.663 Atomic orbital electron populations 1.21593 0.93326 1.02837 1.00567 1.22056 0.96377 0.94078 0.96610 1.21677 1.00136 0.95640 1.01405 1.21616 0.96511 0.85800 0.94273 1.44426 1.86943 0.99679 1.01845 1.18978 1.44123 0.84021 0.88872 0.90561 1.24803 1.02146 0.97353 0.95950 1.69954 1.56516 1.20913 1.09167 0.86226 0.77863 0.82333 0.79461 1.21192 1.21621 1.21257 1.21493 1.01581 0.88511 0.83272 1.22500 0.81140 0.97559 0.96872 0.89606 1.46050 1.15204 1.60371 1.14389 1.20370 0.88661 0.78886 0.82237 1.90682 1.62441 1.41993 1.46936 1.22203 0.95640 1.03559 0.98320 1.21382 0.90136 0.97608 0.86921 0.88167 1.22689 0.95304 0.96277 1.02403 1.22354 0.95796 0.99113 1.02525 1.20951 0.88652 0.79964 0.80443 1.90746 1.76693 1.40983 1.33825 1.46365 1.15637 1.32358 1.42503 0.92826 0.93415 0.91279 0.93108 0.92886 0.92610 0.94165 0.96763 0.93651 0.93437 0.92970 0.77012 0.88846 0.87498 0.88801 0.89509 0.88155 0.87909 0.74184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.60 37.16 0.32 -1.65 16 2 C -0.09 -1.43 0.83 -152.22 -0.13 -1.56 16 3 C -0.13 -1.61 8.35 37.16 0.31 -1.30 16 4 C 0.14 2.75 6.15 -2.53 -0.02 2.74 16 5 N -0.60 -14.61 3.38 -170.07 -0.58 -15.19 16 6 C -0.23 -6.27 10.28 -15.06 -0.15 -6.43 16 7 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 8 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 9 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16 10 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.18 4.20 4.72 -3.07 -0.01 4.19 16 15 C 0.12 2.25 2.52 -65.96 -0.17 2.08 16 16 H 0.09 1.65 7.61 -51.93 -0.40 1.25 16 17 N -0.71 -10.64 4.56 -51.90 -0.24 -10.88 16 18 C 0.51 7.59 7.71 -10.99 -0.08 7.51 16 19 O -0.54 -10.05 14.69 5.56 0.08 -9.97 16 20 C -0.16 -1.51 5.31 -27.88 -0.15 -1.65 16 21 C 0.15 1.40 3.02 -67.01 -0.20 1.20 16 22 H 0.10 1.08 7.99 -51.93 -0.42 0.66 16 23 C -0.13 -0.82 6.70 -25.10 -0.17 -0.99 16 24 C -0.16 -1.21 6.86 -26.74 -0.18 -1.39 16 25 C 0.51 6.36 8.43 -10.86 -0.09 6.27 16 26 O -0.54 -9.13 18.03 5.55 0.10 -9.03 16 27 N -0.71 -8.43 5.46 -52.76 -0.29 -8.72 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.28 7.81 -51.93 -0.41 0.88 16 31 H 0.05 0.56 6.18 -51.93 -0.32 0.24 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.01 0.27 8.04 -51.93 -0.42 -0.15 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.05 1.29 7.41 -51.93 -0.38 0.91 16 38 H 0.05 1.42 7.37 -51.93 -0.38 1.04 16 39 H 0.39 5.00 6.82 -40.82 -0.28 4.73 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.11 0.83 8.14 -51.94 -0.42 0.41 16 42 H 0.09 0.41 7.89 -51.93 -0.41 0.00 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.42 5.60 8.19 -40.82 -0.33 5.27 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -34.19 365.03 -8.20 -42.40 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.51 Total: 6.59 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -0.82 Total: 8.76 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.53 Total: -61.07 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.18 Total: -19.00 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.19 -8.20 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977321524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.201 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds