Wall clock time and date at job start Fri Apr 10 2020 18:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.88739 * 2 1 4 4 C 1.54914 * 111.00263 * 123.87742 * 2 1 3 5 5 N 1.47426 * 104.82992 * 81.06932 * 4 2 1 6 6 C 1.36936 * 125.64483 * 204.16378 * 5 4 2 7 7 H 1.08004 * 120.00405 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00093 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99909 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00506 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47109 * 60.00305 * 10 8 6 12 12 H 1.48499 * 109.47578 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47363 * 300.00729 * 10 8 6 14 14 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 15 15 C 1.54325 * 107.40412 * 358.86539 * 14 5 4 16 16 H 1.09002 * 110.72265 * 219.52294 * 15 14 5 17 17 N 1.46501 * 110.72113 * 96.24493 * 15 14 5 18 18 C 1.34773 * 119.99782 * 86.45299 * 17 15 14 19 19 O 1.21280 * 120.00408 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99682 * 179.97438 * 18 17 15 21 21 C 1.53005 * 109.46991 * 180.02562 * 20 18 17 22 22 H 1.09004 * 110.21273 * 304.52216 * 21 20 18 23 23 C 1.54481 * 110.24663 * 182.50396 * 21 20 18 24 24 C 1.54629 * 101.76379 * 266.41271 * 23 21 20 25 25 C 1.51279 * 104.19458 * 335.20106 * 24 23 21 26 26 O 1.21287 * 124.94437 * 196.22989 * 25 24 23 27 27 N 1.34422 * 110.11785 * 16.25676 * 25 24 23 28 28 H 1.08998 * 109.47124 * 297.57088 * 1 2 3 29 29 H 1.09000 * 109.46711 * 57.57440 * 1 2 3 30 30 H 1.08996 * 109.47179 * 177.57339 * 1 2 3 31 31 H 1.08997 * 109.47394 * 182.42099 * 3 2 1 32 32 H 1.08994 * 109.47153 * 302.42597 * 3 2 1 33 33 H 1.09004 * 109.47185 * 62.42577 * 3 2 1 34 34 H 1.08999 * 110.37121 * 322.22667 * 4 2 1 35 35 H 1.09001 * 110.45739 * 199.95279 * 4 2 1 36 36 H 0.96997 * 120.00493 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.88241 * 118.36067 * 14 5 4 38 38 H 1.09000 * 109.88049 * 239.37196 * 14 5 4 39 39 H 0.97002 * 119.99754 * 266.45742 * 17 15 14 40 40 H 1.09000 * 109.47622 * 300.00278 * 20 18 17 41 41 H 1.08989 * 109.47257 * 60.00481 * 20 18 17 42 42 H 1.08999 * 110.96506 * 24.53293 * 23 21 20 43 43 H 1.09006 * 110.96624 * 148.29080 * 23 21 20 44 44 H 1.08998 * 110.48138 * 216.52533 * 24 23 21 45 45 H 1.08991 * 110.48472 * 93.87964 * 24 23 21 46 46 H 0.97006 * 124.34963 * 180.43035 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0852 -0.8062 1.2007 5 7 2.0139 -2.2156 0.7742 6 6 1.9447 -3.2992 1.6085 7 1 1.9395 -3.1571 2.6792 8 6 1.8811 -4.5805 1.0782 9 7 1.8879 -4.7538 -0.2266 10 14 1.7873 -6.0588 2.2162 11 1 0.5685 -5.9585 3.0587 12 1 1.7296 -7.3031 1.4077 13 1 2.9897 -6.0902 3.0870 14 6 2.0286 -2.2649 -0.6951 15 6 2.0842 -0.8095 -1.2052 16 1 1.4491 -0.6836 -2.0821 17 7 3.4640 -0.4167 -1.5021 18 6 3.9940 -0.6802 -2.7129 19 8 3.3285 -1.2421 -3.5569 20 6 5.4131 -0.2756 -3.0185 21 6 5.7639 -0.6874 -4.4497 22 1 5.5915 -1.7548 -4.5875 23 6 7.2359 -0.3372 -4.7612 24 6 7.0973 1.0601 -5.4088 25 6 5.6886 1.0755 -5.9599 26 8 5.2714 1.8674 -6.7783 27 7 4.9662 0.0841 -5.4101 28 1 -0.3633 0.4756 0.9109 29 1 -0.3633 0.5511 -0.8675 30 1 -0.3633 -1.0267 -0.0435 31 1 3.1643 1.4029 -0.0434 32 1 1.6902 1.9653 -0.8674 33 1 1.7606 1.9385 0.9110 34 1 1.4672 -0.6453 2.0840 35 1 3.1180 -0.5233 1.4046 36 1 1.8431 -5.6491 -0.5972 37 1 2.9064 -2.8120 -1.0389 38 1 1.1232 -2.7508 -1.0587 39 1 3.9961 0.0330 -0.8272 40 1 5.5128 0.8051 -2.9169 41 1 6.0899 -0.7699 -2.3217 42 1 7.8267 -0.2864 -3.8466 43 1 7.6667 -1.0515 -5.4629 44 1 7.8229 1.1814 -6.2131 45 1 7.2224 1.8418 -4.6597 46 1 4.0372 -0.0983 -5.6214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977321524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:31 Heat of formation + Delta-G solvation = -79.628146 kcal Electronic energy + Delta-G solvation = -26764.292290 eV Core-core repulsion = 23073.982475 eV Total energy + Delta-G solvation = -3690.309816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.65672 -40.86993 -39.37067 -37.53614 -35.67227 -34.45122 -32.60421 -32.17138 -31.77719 -29.67849 -28.10640 -27.43288 -26.57020 -24.95921 -22.59472 -21.91427 -21.48165 -21.12456 -20.09430 -18.67467 -18.50215 -17.94344 -17.36007 -16.77259 -16.71437 -16.29695 -15.74928 -15.58769 -15.40169 -15.06242 -14.83201 -14.68049 -14.20738 -14.01087 -13.74721 -13.73207 -13.44824 -13.38889 -13.15818 -13.01477 -12.91682 -12.72444 -12.64496 -12.57728 -12.17701 -12.14048 -11.83936 -11.78632 -11.72185 -11.49622 -11.31102 -10.93837 -10.82233 -10.66845 -10.12713 -9.92071 -8.87730 -7.82534 -5.19158 1.44781 1.47789 1.54341 1.60295 1.77491 2.29927 2.48539 2.50080 3.35338 3.44760 3.50751 3.62187 3.74382 3.78660 3.96838 4.03900 4.08562 4.18472 4.39511 4.41254 4.53221 4.55124 4.68779 4.74144 4.83600 4.86374 4.88631 4.95387 4.98817 5.05374 5.13544 5.14880 5.16972 5.22449 5.33234 5.37462 5.46653 5.55524 5.74041 5.79499 5.86256 6.15889 6.18879 6.68265 7.09605 7.25095 7.40351 7.79455 8.43417 9.26063 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.003698 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.024283 B = 7570.157238 C = 8582.614247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 C -0.123 4.123 4 C 0.139 3.861 5 N -0.620 5.620 6 C -0.239 4.239 7 H 0.086 0.914 8 C -0.067 4.067 9 N -0.952 5.952 10 Si 0.976 3.024 11 H -0.277 1.277 12 H -0.300 1.300 13 H -0.274 1.274 14 C 0.196 3.804 15 C 0.139 3.861 16 H 0.070 0.930 17 N -0.702 5.702 18 C 0.502 3.498 19 O -0.588 6.588 20 C -0.143 4.143 21 C 0.138 3.862 22 H 0.081 0.919 23 C -0.113 4.113 24 C -0.146 4.146 25 C 0.503 3.497 26 O -0.600 6.600 27 N -0.719 5.719 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.243 0.757 37 H 0.003 0.997 38 H -0.002 1.002 39 H 0.410 0.590 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.127 0.873 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.109 14.408 -2.143 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.077 4.077 3 C -0.180 4.180 4 C 0.015 3.985 5 N -0.347 5.347 6 C -0.368 4.368 7 H 0.104 0.896 8 C -0.260 4.260 9 N -0.602 5.602 10 Si 0.805 3.195 11 H -0.204 1.204 12 H -0.226 1.226 13 H -0.200 1.200 14 C 0.070 3.930 15 C 0.032 3.968 16 H 0.088 0.912 17 N -0.354 5.354 18 C 0.290 3.710 19 O -0.468 6.468 20 C -0.184 4.184 21 C 0.033 3.967 22 H 0.100 0.900 23 C -0.150 4.150 24 C -0.186 4.186 25 C 0.291 3.709 26 O -0.482 6.482 27 N -0.371 5.371 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.021 0.979 38 H 0.017 0.983 39 H 0.248 0.752 40 H 0.141 0.859 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.113 0.887 44 H 0.132 0.868 45 H 0.145 0.855 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 11.548 14.213 -3.105 18.574 hybrid contribution -1.026 -1.594 0.452 1.949 sum 10.522 12.620 -2.653 16.643 Atomic orbital electron populations 1.21591 0.93333 1.00734 1.02527 1.22023 0.96391 0.95961 0.93361 1.21642 1.01152 0.92297 1.02951 1.21879 0.97780 0.83280 0.95600 1.44671 1.86623 1.01544 1.01812 1.19439 1.42464 0.85107 0.89769 0.89622 1.25645 1.02872 1.00271 0.97228 1.70231 1.58373 1.20490 1.11069 0.85185 0.78334 0.78456 0.77564 1.20352 1.22636 1.19964 1.21048 0.96973 0.91528 0.83475 1.22006 0.83275 0.94475 0.97020 0.91179 1.45910 1.14007 1.60302 1.15198 1.21458 0.90551 0.77629 0.81346 1.90674 1.64076 1.43837 1.48259 1.22259 0.91856 1.05550 0.98691 1.21579 0.92208 0.96402 0.86523 0.90049 1.22738 0.92811 0.95388 1.04094 1.22406 0.92183 1.00603 1.03388 1.21857 0.90566 0.78921 0.79513 1.90708 1.78141 1.43041 1.36293 1.46603 1.15232 1.32521 1.42724 0.90683 0.91629 0.95402 0.91347 0.91936 0.90547 0.93706 0.94725 0.94807 0.97868 0.98344 0.75150 0.85894 0.84508 0.85292 0.88676 0.86835 0.85455 0.75895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 8.60 71.98 0.62 -3.17 16 2 C -0.08 -2.30 0.83 -50.70 -0.04 -2.34 16 3 C -0.12 -2.50 8.35 71.98 0.60 -1.90 16 4 C 0.14 5.09 6.15 86.86 0.53 5.63 16 5 N -0.62 -30.68 3.38 -691.97 -2.34 -33.02 16 6 C -0.24 -13.12 10.28 84.03 0.86 -12.26 16 7 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 8 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 9 N -0.95 -58.86 10.31 21.65 0.22 -58.64 16 10 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 C 0.20 9.85 4.72 86.73 0.41 10.26 16 15 C 0.14 5.11 2.52 46.27 0.12 5.22 16 16 H 0.07 2.82 7.61 -2.39 -0.02 2.80 16 17 N -0.70 -20.23 4.56 -436.50 -1.99 -22.22 16 18 C 0.50 14.57 7.71 87.66 0.68 15.24 16 19 O -0.59 -22.74 14.69 -3.03 -0.04 -22.79 16 20 C -0.14 -2.33 5.31 29.85 0.16 -2.17 16 21 C 0.14 2.42 3.02 45.45 0.14 2.56 16 22 H 0.08 1.74 7.99 -2.39 -0.02 1.72 16 23 C -0.11 -0.99 6.70 31.65 0.21 -0.77 16 24 C -0.15 -1.73 6.86 30.59 0.21 -1.52 16 25 C 0.50 12.02 8.43 87.90 0.74 12.76 16 26 O -0.60 -20.43 18.03 -3.05 -0.06 -20.49 16 27 N -0.72 -16.89 5.46 -439.42 -2.40 -19.29 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.03 1.06 7.81 -2.39 -0.02 1.04 16 31 H 0.07 1.17 6.18 -2.39 -0.01 1.15 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.61 8.05 -2.39 -0.02 1.59 16 35 H 0.04 1.16 8.04 -2.39 -0.02 1.14 16 36 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.00 0.18 7.41 -2.39 -0.02 0.16 16 38 H 0.00 -0.10 7.37 -2.39 -0.02 -0.11 16 39 H 0.41 9.10 6.82 -92.71 -0.63 8.47 16 40 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.13 0.33 7.89 -2.39 -0.02 0.31 16 43 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.40 11.45 8.19 -92.70 -0.76 10.69 16 Total: -1.00 -83.01 365.03 0.72 -82.29 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.40 Total: 22.11 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 5.70 Total: 24.16 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -6.51 Total: -133.16 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.10 Total: -43.27 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -83.01 0.72 -82.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977321524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.662 kcal (2) G-P(sol) polarization free energy of solvation -83.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds