Wall clock time and date at job start Fri Apr 10 2020 18:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 C 1.50705 * 110.43509 * 310.29165 * 3 2 1 5 5 O 1.21277 * 119.99906 * 263.23078 * 4 3 2 6 6 N 1.34779 * 119.99468 * 83.22810 * 4 3 2 7 7 C 1.48207 * 119.97436 * 353.51878 * 6 4 3 8 8 C 1.47141 * 110.34277 * 102.46719 * 7 6 4 9 9 C 1.53791 * 111.84502 * 58.29501 * 8 7 6 10 10 N 1.43473 * 107.96187 * 281.67404 * 9 8 7 11 11 C 1.36938 * 118.93821 * 273.62459 * 10 9 8 12 12 H 1.08003 * 119.99608 * 141.91203 * 11 10 9 13 13 C 1.38813 * 120.00227 * 321.91712 * 11 10 9 14 14 N 1.31611 * 119.99697 * 161.72592 * 13 11 10 15 15 Si 1.86797 * 119.99644 * 341.72177 * 13 11 10 16 16 H 1.48503 * 109.47136 * 90.15257 * 15 13 11 17 17 H 1.48505 * 109.46874 * 210.14603 * 15 13 11 18 18 H 1.48494 * 109.47572 * 330.14903 * 15 13 11 19 19 C 1.48859 * 122.11744 * 93.60639 * 10 9 8 20 20 C 1.43627 * 119.96508 * 173.24061 * 6 4 3 21 21 C 1.54625 * 110.48639 * 187.75083 * 3 2 1 22 22 C 1.54480 * 101.76762 * 216.52365 * 21 3 2 23 23 N 1.46763 * 105.46907 * 25.41451 * 22 21 3 24 24 C 1.34415 * 111.30582 * 342.98491 * 23 22 21 25 25 O 1.21277 * 124.94493 * 180.44080 * 24 23 22 26 26 H 1.08994 * 109.47221 * 157.48515 * 1 2 3 27 27 H 1.08999 * 109.47195 * 277.49346 * 1 2 3 28 28 H 1.09004 * 109.46860 * 37.49126 * 1 2 3 29 29 H 1.08994 * 109.47263 * 119.99741 * 2 1 3 30 30 H 1.08998 * 109.47270 * 240.00275 * 2 1 3 31 31 H 1.09006 * 109.32568 * 222.72719 * 7 6 4 32 32 H 1.08996 * 109.32925 * 342.19967 * 7 6 4 33 33 H 1.09004 * 109.00454 * 178.90546 * 8 7 6 34 34 H 1.09006 * 109.00477 * 297.68248 * 8 7 6 35 35 H 1.08999 * 109.76060 * 41.28715 * 9 8 7 36 36 H 1.09001 * 109.76924 * 162.05594 * 9 8 7 37 37 H 0.97008 * 119.99510 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.48417 * 80.62634 * 19 10 9 39 39 H 1.09008 * 109.47535 * 200.64967 * 19 10 9 40 40 H 1.09000 * 108.87233 * 31.47591 * 20 6 4 41 41 H 1.08999 * 108.86683 * 149.90819 * 20 6 4 42 42 H 1.09005 * 110.97326 * 334.64394 * 21 3 2 43 43 H 1.09004 * 110.96821 * 98.36946 * 21 3 2 44 44 H 1.08996 * 110.24767 * 144.41610 * 22 21 3 45 45 H 1.08996 * 110.24855 * 266.41894 * 22 21 3 46 46 H 0.97007 * 124.34998 * 162.98476 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3544 2.2430 -1.0772 5 8 1.8936 2.4000 -2.1521 6 7 0.1420 2.7844 -0.8458 7 6 -0.5797 2.4746 0.4110 8 6 -0.4688 3.5980 1.3548 9 6 -1.0275 4.9018 0.7605 10 7 -0.0431 5.4372 -0.1354 11 6 0.9416 6.2447 0.3681 12 1 1.9477 6.1746 -0.0185 13 6 0.6469 7.1532 1.3754 14 7 1.6159 7.6642 2.1048 15 14 -1.1250 7.6505 1.6954 16 1 -1.7245 6.7305 2.6952 17 1 -1.1626 9.0405 2.2167 18 1 -1.8966 7.5758 0.4288 19 6 -0.0575 5.1429 -1.5945 20 6 -0.4468 3.6658 -1.8150 21 6 3.5736 1.4743 -0.1953 22 6 3.9826 2.6542 0.7141 23 7 2.9298 2.7468 1.7324 24 6 1.8253 2.0800 1.3551 25 8 0.8050 2.0014 2.0059 26 1 -0.3633 -0.9493 -0.3935 27 1 -0.3633 0.1340 1.0189 28 1 -0.3633 0.8154 -0.6255 29 1 1.8933 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 -1.6312 2.2934 0.1880 32 1 -0.1501 1.5804 0.8627 33 1 -1.0224 3.3555 2.2619 34 1 0.5807 3.7452 1.6098 35 1 -1.9479 4.6935 0.2149 36 1 -1.2258 5.6160 1.5597 37 1 1.4098 8.2988 2.8089 38 1 -0.7833 5.7888 -2.0886 39 1 0.9333 5.3237 -2.0116 40 1 -0.1199 3.3645 -2.8102 41 1 -1.5317 3.5758 -1.7601 42 1 4.0295 0.5441 0.1438 43 1 3.8302 1.6756 -1.2354 44 1 4.9451 2.4522 1.1839 45 1 4.0305 3.5770 0.1361 46 1 3.0194 3.2275 2.5702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981376950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:59 Heat of formation + Delta-G solvation = 63.350150 kcal Electronic energy + Delta-G solvation = -29749.074039 eV Core-core repulsion = 26064.964227 eV Total energy + Delta-G solvation = -3684.109811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.01713 -38.73599 -37.80455 -36.12553 -34.93761 -33.87281 -31.85344 -31.47219 -29.97865 -28.32619 -27.15768 -25.58467 -23.98111 -22.92200 -22.51594 -21.69417 -20.75672 -19.81494 -17.83381 -17.50364 -17.22112 -16.79564 -16.25394 -15.67050 -15.32083 -14.81978 -14.39650 -14.26057 -14.10846 -13.87061 -13.68480 -13.24558 -13.00248 -12.95247 -12.78665 -12.51726 -12.36561 -12.14374 -12.03885 -11.93021 -11.43766 -11.25672 -11.05102 -10.81418 -10.73968 -10.51750 -10.42687 -10.24403 -10.02694 -9.58223 -9.53117 -9.28709 -8.69663 -8.55379 -8.37926 -8.08842 -6.67719 -5.94007 -3.35394 2.58362 2.98392 3.33314 3.43203 3.47913 3.53177 3.58043 4.25414 4.46301 4.55580 4.60676 4.86009 5.03068 5.13745 5.19426 5.24390 5.36109 5.43998 5.53487 5.63721 5.68456 5.69923 5.81893 5.89894 5.90046 5.98833 6.06228 6.09944 6.15003 6.22774 6.28866 6.32556 6.51176 6.71427 6.73557 6.74635 6.91873 6.95536 7.11651 7.32958 7.42029 7.82182 8.16430 8.38958 8.41823 8.51659 9.10210 9.78535 10.17224 11.21930 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.006968 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.710494 B = 4017.561843 C = 4356.364361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C -0.113 4.113 4 C 0.543 3.457 5 O -0.545 6.545 6 N -0.575 5.575 7 C 0.040 3.960 8 C -0.148 4.148 9 C 0.137 3.863 10 N -0.604 5.604 11 C -0.258 4.258 12 H 0.073 0.927 13 C 0.032 3.968 14 N -0.908 5.908 15 Si 0.891 3.109 16 H -0.286 1.286 17 H -0.306 1.306 18 H -0.275 1.275 19 C 0.130 3.870 20 C 0.095 3.905 21 C -0.118 4.118 22 C 0.100 3.900 23 N -0.711 5.711 24 C 0.516 3.484 25 O -0.491 6.491 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.177 0.823 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.029 0.971 36 H 0.047 0.953 37 H 0.261 0.739 38 H 0.031 0.969 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 -16.148 -2.818 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.133 4.133 3 C -0.120 4.120 4 C 0.329 3.671 5 O -0.423 6.423 6 N -0.305 5.305 7 C -0.078 4.078 8 C -0.188 4.188 9 C 0.010 3.990 10 N -0.327 5.327 11 C -0.387 4.387 12 H 0.090 0.910 13 C -0.168 4.168 14 N -0.551 5.551 15 Si 0.723 3.277 16 H -0.214 1.214 17 H -0.235 1.235 18 H -0.200 1.200 19 C 0.004 3.996 20 C -0.030 4.030 21 C -0.156 4.156 22 C -0.025 4.025 23 N -0.365 5.365 24 C 0.302 3.698 25 O -0.368 6.368 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.192 0.808 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.816 -16.019 -3.052 16.327 hybrid contribution -1.056 1.052 0.699 1.646 sum -0.239 -14.967 -2.353 15.153 Atomic orbital electron populations 1.22765 0.95295 1.03030 1.03332 1.21374 0.96974 0.91700 1.03253 1.21651 0.98329 0.97816 0.94224 1.19455 0.81015 0.79200 0.87404 1.90630 1.64712 1.61604 1.25388 1.47640 1.17968 1.44267 1.20594 1.23736 0.96258 1.04489 0.83326 1.21952 1.04329 0.95239 0.97293 1.20959 0.90866 0.94144 0.93007 1.43895 1.31881 1.55970 1.01003 1.18753 0.89405 1.12389 1.18117 0.90990 1.25425 0.96721 0.96605 0.98018 1.69810 1.31614 1.32694 1.20955 0.86809 0.87042 0.75897 0.77926 1.21434 1.23490 1.20001 1.21993 0.99856 0.91751 0.85974 1.21572 0.97168 0.91704 0.92527 1.22710 0.91260 0.98814 1.02794 1.22110 0.90993 0.99440 0.89972 1.45918 1.15002 1.53503 1.22105 1.19904 0.82570 0.79415 0.87948 1.90656 1.25932 1.60998 1.59206 0.92640 0.90489 0.89932 0.90545 0.90366 0.93843 0.80816 0.92780 0.89383 0.95231 0.93564 0.92937 0.95130 0.92233 0.90614 0.91921 0.89458 0.87488 0.90048 0.90395 0.74335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 8.01 37.16 0.30 -1.92 16 2 C -0.09 -1.08 4.97 -26.73 -0.13 -1.21 16 3 C -0.11 -1.62 0.56 -155.67 -0.09 -1.71 16 4 C 0.54 9.55 5.71 -10.98 -0.06 9.49 16 5 O -0.54 -10.69 15.18 5.56 0.08 -10.60 16 6 N -0.57 -10.28 1.78 -177.01 -0.32 -10.60 16 7 C 0.04 0.70 2.85 -5.92 -0.02 0.68 16 8 C -0.15 -3.07 3.84 -29.13 -0.11 -3.18 16 9 C 0.14 3.14 4.52 -5.23 -0.02 3.11 16 10 N -0.60 -14.68 2.15 -172.32 -0.37 -15.05 16 11 C -0.26 -7.26 9.60 -15.06 -0.14 -7.40 16 12 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16 13 C 0.03 0.92 5.35 -17.43 -0.09 0.83 16 14 N -0.91 -27.66 13.97 55.49 0.78 -26.88 16 15 Si 0.89 23.24 24.99 -169.99 -4.25 18.99 16 16 H -0.29 -7.29 6.53 56.52 0.37 -6.92 16 17 H -0.31 -8.09 7.11 56.52 0.40 -7.68 16 18 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 19 C 0.13 2.75 6.84 -2.04 -0.01 2.74 16 20 C 0.10 1.71 5.26 -4.87 -0.03 1.69 16 21 C -0.12 -1.39 6.17 -25.10 -0.15 -1.55 16 22 C 0.10 1.26 7.78 -3.12 -0.02 1.24 16 23 N -0.71 -10.63 6.22 -59.21 -0.37 -11.00 16 24 C 0.52 8.26 4.88 -10.86 -0.05 8.21 16 25 O -0.49 -8.61 9.97 5.56 0.06 -8.56 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.94 6.39 -51.93 -0.33 0.61 16 28 H 0.08 1.14 3.83 -51.93 -0.20 0.94 16 29 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 32 H 0.18 2.78 0.47 -57.56 -0.03 2.75 16 33 H 0.05 1.10 7.99 -51.93 -0.41 0.68 16 34 H 0.09 2.03 4.92 -51.73 -0.25 1.78 16 35 H 0.03 0.62 7.58 -51.93 -0.39 0.23 16 36 H 0.05 1.18 2.57 -51.93 -0.13 1.04 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 1.33 7.97 -51.92 -0.41 0.92 16 40 H 0.08 1.30 7.28 -51.93 -0.38 0.93 16 41 H 0.06 1.02 7.73 -51.93 -0.40 0.62 16 42 H 0.09 0.77 7.91 -51.93 -0.41 0.36 16 43 H 0.11 1.36 6.91 -51.93 -0.36 1.00 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.42 6.20 8.96 -40.82 -0.37 5.83 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -33.18 325.08 -6.76 -39.94 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.63 Total: 7.84 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -0.65 Total: 11.02 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -0.28 Total: -63.53 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.14 Total: -19.16 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.25 Total: 18.99 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.18 -6.76 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981376950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.292 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds