Wall clock time and date at job start Fri Apr 10 2020 18:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 C 1.50705 * 110.43509 * 310.29165 * 3 2 1 5 5 O 1.21277 * 119.99906 * 263.23078 * 4 3 2 6 6 N 1.34779 * 119.99468 * 83.22810 * 4 3 2 7 7 C 1.48207 * 119.97436 * 353.51878 * 6 4 3 8 8 C 1.47141 * 110.34277 * 102.46719 * 7 6 4 9 9 C 1.53791 * 111.84502 * 58.29501 * 8 7 6 10 10 N 1.43473 * 107.96187 * 281.67404 * 9 8 7 11 11 C 1.36938 * 118.93821 * 273.62459 * 10 9 8 12 12 H 1.08003 * 119.99608 * 141.91203 * 11 10 9 13 13 C 1.38813 * 120.00227 * 321.91712 * 11 10 9 14 14 N 1.31611 * 119.99697 * 161.72592 * 13 11 10 15 15 Si 1.86797 * 119.99644 * 341.72177 * 13 11 10 16 16 H 1.48503 * 109.47136 * 90.15257 * 15 13 11 17 17 H 1.48505 * 109.46874 * 210.14603 * 15 13 11 18 18 H 1.48494 * 109.47572 * 330.14903 * 15 13 11 19 19 C 1.48859 * 122.11744 * 93.60639 * 10 9 8 20 20 C 1.43627 * 119.96508 * 173.24061 * 6 4 3 21 21 C 1.54625 * 110.48639 * 187.75083 * 3 2 1 22 22 C 1.54480 * 101.76762 * 216.52365 * 21 3 2 23 23 N 1.46763 * 105.46907 * 25.41451 * 22 21 3 24 24 C 1.34415 * 111.30582 * 342.98491 * 23 22 21 25 25 O 1.21277 * 124.94493 * 180.44080 * 24 23 22 26 26 H 1.08994 * 109.47221 * 157.48515 * 1 2 3 27 27 H 1.08999 * 109.47195 * 277.49346 * 1 2 3 28 28 H 1.09004 * 109.46860 * 37.49126 * 1 2 3 29 29 H 1.08994 * 109.47263 * 119.99741 * 2 1 3 30 30 H 1.08998 * 109.47270 * 240.00275 * 2 1 3 31 31 H 1.09006 * 109.32568 * 222.72719 * 7 6 4 32 32 H 1.08996 * 109.32925 * 342.19967 * 7 6 4 33 33 H 1.09004 * 109.00454 * 178.90546 * 8 7 6 34 34 H 1.09006 * 109.00477 * 297.68248 * 8 7 6 35 35 H 1.08999 * 109.76060 * 41.28715 * 9 8 7 36 36 H 1.09001 * 109.76924 * 162.05594 * 9 8 7 37 37 H 0.97008 * 119.99510 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.48417 * 80.62634 * 19 10 9 39 39 H 1.09008 * 109.47535 * 200.64967 * 19 10 9 40 40 H 1.09000 * 108.87233 * 31.47591 * 20 6 4 41 41 H 1.08999 * 108.86683 * 149.90819 * 20 6 4 42 42 H 1.09005 * 110.97326 * 334.64394 * 21 3 2 43 43 H 1.09004 * 110.96821 * 98.36946 * 21 3 2 44 44 H 1.08996 * 110.24767 * 144.41610 * 22 21 3 45 45 H 1.08996 * 110.24855 * 266.41894 * 22 21 3 46 46 H 0.97007 * 124.34998 * 162.98476 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3544 2.2430 -1.0772 5 8 1.8936 2.4000 -2.1521 6 7 0.1420 2.7844 -0.8458 7 6 -0.5797 2.4746 0.4110 8 6 -0.4688 3.5980 1.3548 9 6 -1.0275 4.9018 0.7605 10 7 -0.0431 5.4372 -0.1354 11 6 0.9416 6.2447 0.3681 12 1 1.9477 6.1746 -0.0185 13 6 0.6469 7.1532 1.3754 14 7 1.6159 7.6642 2.1048 15 14 -1.1250 7.6505 1.6954 16 1 -1.7245 6.7305 2.6952 17 1 -1.1626 9.0405 2.2167 18 1 -1.8966 7.5758 0.4288 19 6 -0.0575 5.1429 -1.5945 20 6 -0.4468 3.6658 -1.8150 21 6 3.5736 1.4743 -0.1953 22 6 3.9826 2.6542 0.7141 23 7 2.9298 2.7468 1.7324 24 6 1.8253 2.0800 1.3551 25 8 0.8050 2.0014 2.0059 26 1 -0.3633 -0.9493 -0.3935 27 1 -0.3633 0.1340 1.0189 28 1 -0.3633 0.8154 -0.6255 29 1 1.8933 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 -1.6312 2.2934 0.1880 32 1 -0.1501 1.5804 0.8627 33 1 -1.0224 3.3555 2.2619 34 1 0.5807 3.7452 1.6098 35 1 -1.9479 4.6935 0.2149 36 1 -1.2258 5.6160 1.5597 37 1 1.4098 8.2988 2.8089 38 1 -0.7833 5.7888 -2.0886 39 1 0.9333 5.3237 -2.0116 40 1 -0.1199 3.3645 -2.8102 41 1 -1.5317 3.5758 -1.7601 42 1 4.0295 0.5441 0.1438 43 1 3.8302 1.6756 -1.2354 44 1 4.9451 2.4522 1.1839 45 1 4.0305 3.5770 0.1361 46 1 3.0194 3.2275 2.5702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981376950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:57 Heat of formation + Delta-G solvation = 39.191332 kcal Electronic energy + Delta-G solvation = -29750.121644 eV Core-core repulsion = 26064.964227 eV Total energy + Delta-G solvation = -3685.157416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -43.26618 -40.10628 -39.27548 -37.59143 -36.28149 -35.26257 -33.63752 -33.36810 -31.01966 -29.85006 -28.52278 -27.16106 -25.77369 -24.25982 -23.81212 -22.84951 -22.13632 -21.51196 -19.08568 -18.84424 -18.81204 -18.41314 -17.82210 -17.27376 -16.94398 -16.26472 -15.75019 -15.69014 -15.40593 -15.29608 -15.04213 -14.87364 -14.61473 -14.19084 -14.13936 -13.99492 -13.70693 -13.56208 -13.50626 -13.38678 -12.93196 -12.75510 -12.40548 -12.32012 -12.16589 -12.03760 -11.99478 -11.76478 -11.52692 -11.37330 -11.25672 -10.73346 -10.59011 -9.97691 -9.78312 -9.55812 -8.68551 -8.20353 -5.58684 1.24570 1.29565 1.34288 1.45144 1.67390 2.11551 2.37563 2.42622 3.07837 3.15516 3.33946 3.35604 3.53761 3.76360 4.06496 4.11528 4.17149 4.24917 4.30783 4.33982 4.40296 4.49797 4.54988 4.63437 4.68009 4.73584 4.81483 4.86409 4.96958 4.97239 5.01059 5.05232 5.06778 5.15757 5.20147 5.38861 5.44477 5.59472 5.74463 5.80661 5.95611 6.09559 6.13049 6.44560 7.01412 7.12856 7.18824 7.64640 8.02220 8.99030 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.006968 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.710494 B = 4017.561843 C = 4356.364361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.092 4.092 3 C -0.113 4.113 4 C 0.535 3.465 5 O -0.571 6.571 6 N -0.580 5.580 7 C 0.043 3.957 8 C -0.137 4.137 9 C 0.129 3.871 10 N -0.610 5.610 11 C -0.243 4.243 12 H 0.029 0.971 13 C -0.019 4.019 14 N -0.949 5.949 15 Si 0.954 3.046 16 H -0.276 1.276 17 H -0.312 1.312 18 H -0.268 1.268 19 C 0.128 3.872 20 C 0.100 3.900 21 C -0.109 4.109 22 C 0.096 3.904 23 N -0.716 5.716 24 C 0.509 3.491 25 O -0.511 6.511 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.195 0.805 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.129 0.871 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.042 0.958 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.152 -18.792 -3.119 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.130 4.130 3 C -0.119 4.119 4 C 0.323 3.677 5 O -0.451 6.451 6 N -0.309 5.309 7 C -0.075 4.075 8 C -0.178 4.178 9 C 0.003 3.997 10 N -0.334 5.334 11 C -0.373 4.373 12 H 0.046 0.954 13 C -0.215 4.215 14 N -0.594 5.594 15 Si 0.785 3.215 16 H -0.204 1.204 17 H -0.241 1.241 18 H -0.193 1.193 19 C 0.003 3.997 20 C -0.025 4.025 21 C -0.147 4.147 22 C -0.028 4.028 23 N -0.369 5.369 24 C 0.295 3.705 25 O -0.390 6.390 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.210 0.790 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.147 0.853 43 H 0.116 0.884 44 H 0.138 0.862 45 H 0.061 0.939 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.408 -18.692 -3.378 18.999 hybrid contribution -0.581 1.873 0.754 2.101 sum -0.990 -16.819 -2.623 17.051 Atomic orbital electron populations 1.22700 0.95564 1.03597 1.02627 1.21483 0.96774 0.89608 1.05163 1.21756 0.99609 0.98901 0.91646 1.20078 0.80735 0.79020 0.87858 1.90613 1.65185 1.62561 1.26741 1.47761 1.18390 1.44131 1.20666 1.23833 0.97597 1.03645 0.82429 1.21857 1.02310 0.95325 0.98269 1.21079 0.91549 0.94569 0.92470 1.43942 1.31281 1.55641 1.02573 1.18507 0.88699 1.12573 1.17532 0.95353 1.25974 1.00336 0.96988 0.98242 1.69935 1.33572 1.33873 1.21985 0.85778 0.82526 0.75078 0.78133 1.20406 1.24071 1.19264 1.22092 0.99040 0.94673 0.83896 1.21491 0.98657 0.89299 0.93078 1.22789 0.89742 1.00067 1.02101 1.22247 0.92249 0.98529 0.89741 1.46107 1.15593 1.52928 1.22293 1.20302 0.82397 0.79349 0.88470 1.90609 1.26571 1.61875 1.59960 0.90222 0.91018 0.91842 0.88387 0.88604 0.91869 0.78994 0.92504 0.92141 0.92690 0.95840 0.93066 0.93716 0.94724 0.89844 0.89391 0.85258 0.88411 0.86247 0.93942 0.74782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.82 8.01 71.98 0.58 -3.24 16 2 C -0.09 -1.78 4.97 30.60 0.15 -1.63 16 3 C -0.11 -3.00 0.56 -52.93 -0.03 -3.03 16 4 C 0.54 18.27 5.71 87.66 0.50 18.77 16 5 O -0.57 -22.13 15.18 -3.02 -0.05 -22.17 16 6 N -0.58 -19.92 1.78 -832.31 -1.49 -21.40 16 7 C 0.04 1.40 2.85 84.23 0.24 1.64 16 8 C -0.14 -5.56 3.84 29.04 0.11 -5.45 16 9 C 0.13 5.75 4.52 87.21 0.39 6.15 16 10 N -0.61 -29.69 2.15 -699.11 -1.50 -31.20 16 11 C -0.24 -14.13 9.60 84.03 0.81 -13.33 16 12 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 13 C -0.02 -1.16 5.35 84.86 0.45 -0.70 16 14 N -0.95 -59.70 13.97 21.65 0.30 -59.39 16 15 Si 0.95 48.60 24.99 68.60 1.71 50.32 16 16 H -0.28 -13.53 6.53 99.48 0.65 -12.88 16 17 H -0.31 -16.00 7.11 99.48 0.71 -15.30 16 18 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 19 C 0.13 5.38 6.84 86.37 0.59 5.97 16 20 C 0.10 3.42 5.26 87.36 0.46 3.88 16 21 C -0.11 -2.36 6.17 31.65 0.20 -2.16 16 22 C 0.10 2.39 7.78 86.83 0.68 3.07 16 23 N -0.72 -21.39 6.22 -459.82 -2.86 -24.25 16 24 C 0.51 15.79 4.88 87.90 0.43 16.22 16 25 O -0.51 -17.41 9.97 -3.02 -0.03 -17.44 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.54 6.39 -2.39 -0.02 1.52 16 28 H 0.06 1.56 3.83 -2.39 -0.01 1.55 16 29 H 0.10 1.52 8.10 -2.39 -0.02 1.50 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.82 8.06 -2.38 -0.02 1.80 16 32 H 0.20 5.72 0.47 -92.43 -0.04 5.68 16 33 H 0.06 2.24 7.99 -2.39 -0.02 2.22 16 34 H 0.06 2.80 4.92 -2.47 -0.01 2.79 16 35 H 0.05 2.16 7.58 -2.39 -0.02 2.15 16 36 H 0.02 1.18 2.57 -2.39 -0.01 1.17 16 37 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.03 1.59 7.97 -2.38 -0.02 1.57 16 40 H 0.08 2.75 7.28 -2.39 -0.02 2.73 16 41 H 0.09 2.57 7.73 -2.39 -0.02 2.56 16 42 H 0.13 1.72 7.91 -2.38 -0.02 1.70 16 43 H 0.10 2.36 6.91 -2.39 -0.02 2.34 16 44 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.41 12.61 8.96 -92.70 -0.83 11.78 16 Total: -1.00 -74.17 325.08 1.74 -72.43 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.09 Total: 26.94 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 5.56 Total: 26.17 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -5.54 Total: -136.24 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.08 Total: -39.61 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.71 Total: 50.32 kcal Total: -74.17 1.74 -72.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981376950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.619 kcal (2) G-P(sol) polarization free energy of solvation -74.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds