Wall clock time and date at job start Fri Apr 10 2020 18:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47215 * 2 1 4 4 C 1.50702 * 110.43261 * 63.33918 * 3 2 1 5 5 O 1.21281 * 119.99958 * 1.62669 * 4 3 2 6 6 N 1.34774 * 119.99701 * 181.62207 * 4 3 2 7 7 C 1.48212 * 119.97248 * 5.42480 * 6 4 3 8 8 C 1.47141 * 110.34411 * 102.46391 * 7 6 4 9 9 C 1.53803 * 111.83908 * 58.29629 * 8 7 6 10 10 N 1.43464 * 107.95950 * 281.67017 * 9 8 7 11 11 C 1.36941 * 118.93901 * 273.60560 * 10 9 8 12 12 H 1.08002 * 119.99919 * 142.53412 * 11 10 9 13 13 C 1.38813 * 119.99777 * 322.53940 * 11 10 9 14 14 N 1.31622 * 119.99634 * 157.55037 * 13 11 10 15 15 Si 1.86799 * 120.00282 * 337.54312 * 13 11 10 16 16 H 1.48500 * 109.47134 * 90.57661 * 15 13 11 17 17 H 1.48502 * 109.47036 * 210.57514 * 15 13 11 18 18 H 1.48500 * 109.46942 * 330.57284 * 15 13 11 19 19 C 1.48851 * 122.11890 * 93.63345 * 10 9 8 20 20 C 1.43625 * 119.96914 * 185.39737 * 6 4 3 21 21 C 1.54625 * 110.48689 * 185.88109 * 3 2 1 22 22 C 1.54471 * 101.76537 * 94.01284 * 21 3 2 23 23 N 1.46759 * 105.47579 * 25.41660 * 22 21 3 24 24 C 1.34423 * 111.29823 * 342.97997 * 23 22 21 25 25 O 1.21279 * 124.94255 * 180.44189 * 24 23 22 26 26 H 1.08996 * 109.47129 * 185.73351 * 1 2 3 27 27 H 1.08997 * 109.47240 * 305.73372 * 1 2 3 28 28 H 1.09001 * 109.46507 * 65.73744 * 1 2 3 29 29 H 1.09000 * 109.47404 * 239.99759 * 2 1 3 30 30 H 1.09002 * 109.46829 * 119.99684 * 2 1 3 31 31 H 1.09001 * 109.32274 * 342.19527 * 7 6 4 32 32 H 1.08997 * 109.32318 * 222.73494 * 7 6 4 33 33 H 1.09006 * 109.00473 * 178.90098 * 8 7 6 34 34 H 1.08990 * 109.00892 * 297.68848 * 8 7 6 35 35 H 1.09000 * 109.76347 * 41.28706 * 9 8 7 36 36 H 1.08997 * 109.75931 * 162.05263 * 9 8 7 37 37 H 0.96996 * 120.00137 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.48157 * 80.60323 * 19 10 9 39 39 H 1.09001 * 109.47877 * 200.62978 * 19 10 9 40 40 H 1.09006 * 108.87139 * 149.91066 * 20 6 4 41 41 H 1.08997 * 108.79248 * 31.42279 * 20 6 4 42 42 H 1.09007 * 110.97118 * 212.13637 * 21 3 2 43 43 H 1.09003 * 110.97067 * 335.89573 * 21 3 2 44 44 H 1.09003 * 110.24827 * 144.41846 * 22 21 3 45 45 H 1.09007 * 110.25064 * 266.41487 * 22 21 3 46 46 H 0.96998 * 124.35489 * 162.98428 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6180 2.1498 1.2621 5 8 0.9903 1.5527 2.1108 6 7 1.9382 3.4457 1.4475 7 6 2.5990 4.2079 0.3616 8 6 1.6266 5.0792 -0.3167 9 6 0.9628 6.0648 0.6598 10 7 -0.0460 5.3525 1.3898 11 6 -1.3013 5.2458 0.8531 12 1 -1.8643 4.3320 0.9737 13 6 -1.8501 6.3121 0.1540 14 7 -2.8140 6.1015 -0.7172 15 14 -1.2210 8.0459 0.4499 16 1 -0.1111 8.3373 -0.4926 17 1 -2.3235 9.0165 0.2316 18 1 -0.7284 8.1621 1.8460 19 6 0.2277 4.7261 2.7121 20 6 1.6383 4.0871 2.6971 21 6 3.5789 1.4724 -0.1484 22 6 3.7449 1.6358 -1.6755 23 7 2.5114 2.2838 -2.1364 24 6 1.5354 2.1854 -1.2173 25 8 0.4133 2.6274 -1.3456 26 1 -0.3633 -1.0225 0.1027 27 1 -0.3633 0.6002 0.8342 28 1 -0.3632 0.4223 -0.9369 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0245 3.5112 -0.3607 32 1 3.3974 4.8182 0.7835 33 1 2.1386 5.6429 -1.0967 34 1 0.8554 4.4608 -0.7757 35 1 1.7089 6.4583 1.3503 36 1 0.5064 6.8836 0.1036 37 1 -3.1977 6.8465 -1.2055 38 1 0.1815 5.4869 3.4913 39 1 -0.5180 3.9563 2.9109 40 1 2.3797 4.8648 2.8810 41 1 1.6988 3.3471 3.4950 42 1 4.0057 2.3227 0.3836 43 1 4.0221 0.5374 0.1943 44 1 4.6069 2.2655 -1.8960 45 1 3.8584 0.6606 -2.1491 46 1 2.4130 2.7261 -2.9940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981376951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:03 Heat of formation + Delta-G solvation = -7.779133 kcal Electronic energy + Delta-G solvation = -29313.209221 eV Core-core repulsion = 25626.015012 eV Total energy + Delta-G solvation = -3687.194209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.68397 -38.85403 -37.32531 -36.33828 -34.50600 -33.66470 -32.14540 -31.47074 -30.16929 -28.25966 -26.96106 -25.71363 -23.77319 -22.85574 -22.61739 -21.91733 -20.77256 -19.77236 -18.24321 -17.39624 -16.73549 -16.58969 -16.32333 -15.60057 -15.30880 -14.93768 -14.41771 -14.17804 -14.00218 -13.90033 -13.50814 -13.25869 -13.02289 -12.92775 -12.69723 -12.65955 -12.37987 -12.27260 -12.05590 -11.85174 -11.64014 -11.35689 -10.98624 -10.87091 -10.81669 -10.73591 -10.49029 -10.35322 -10.08326 -9.62674 -9.54191 -9.42839 -9.25265 -8.91381 -8.34801 -8.16724 -6.64838 -5.80737 -3.20147 2.70063 2.84781 3.35444 3.35950 3.37334 3.52595 3.57512 4.21214 4.34161 4.47362 4.64182 4.75629 4.82399 5.06893 5.10837 5.18125 5.24582 5.44670 5.45942 5.50010 5.55231 5.59867 5.65065 5.70325 5.83572 5.92459 5.93767 6.07383 6.16877 6.19388 6.34047 6.38367 6.41201 6.64954 6.77184 6.79356 6.82012 6.84552 7.00831 7.08189 7.37219 7.74691 8.26584 8.41316 8.54226 8.58126 9.20414 9.89532 10.25215 11.35435 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.006236 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.000898 B = 4489.330603 C = 4601.445223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.081 4.081 3 C -0.115 4.115 4 C 0.543 3.457 5 O -0.529 6.529 6 N -0.580 5.580 7 C 0.105 3.895 8 C -0.191 4.191 9 C 0.152 3.848 10 N -0.599 5.599 11 C -0.251 4.251 12 H 0.075 0.925 13 C 0.032 3.968 14 N -0.900 5.900 15 Si 0.878 3.122 16 H -0.287 1.287 17 H -0.304 1.304 18 H -0.274 1.274 19 C 0.129 3.871 20 C 0.103 3.897 21 C -0.133 4.133 22 C 0.104 3.896 23 N -0.741 5.741 24 C 0.524 3.476 25 O -0.465 6.465 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.259 0.741 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.257 -9.482 -0.925 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.120 4.120 3 C -0.122 4.122 4 C 0.330 3.670 5 O -0.406 6.406 6 N -0.312 5.312 7 C -0.016 4.016 8 C -0.231 4.231 9 C 0.025 3.975 10 N -0.322 5.322 11 C -0.380 4.380 12 H 0.092 0.908 13 C -0.167 4.167 14 N -0.542 5.542 15 Si 0.709 3.291 16 H -0.216 1.216 17 H -0.233 1.233 18 H -0.199 1.199 19 C 0.004 3.996 20 C -0.022 4.022 21 C -0.171 4.171 22 C -0.021 4.021 23 N -0.401 5.401 24 C 0.308 3.692 25 O -0.335 6.335 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 18.173 -9.533 -0.488 20.528 hybrid contribution 0.393 1.454 -0.505 1.589 sum 18.566 -8.078 -0.994 20.272 Atomic orbital electron populations 1.21926 0.94087 1.01719 1.04170 1.21189 0.97934 0.90643 1.02184 1.21723 0.97131 0.98880 0.94428 1.19531 0.78923 0.81747 0.86823 1.90630 1.38658 1.66283 1.45011 1.47282 1.59130 1.09358 1.15385 1.21179 0.95315 0.95437 0.89718 1.22103 1.00445 1.00721 0.99832 1.20670 0.90633 0.93564 0.92652 1.43853 1.08350 1.63347 1.16652 1.18779 0.91396 0.98020 1.29855 0.90753 1.25418 0.96144 0.97354 0.97806 1.69904 1.28937 1.30877 1.24467 0.87022 0.76505 0.86876 0.78668 1.21591 1.23270 1.19916 1.22091 0.94173 0.95651 0.87721 1.21636 0.98484 0.96706 0.85409 1.22947 0.93220 1.04757 0.96143 1.22010 0.87605 0.98366 0.94114 1.46203 1.13249 1.59833 1.20780 1.20183 0.85170 0.79310 0.84528 1.90966 1.18481 1.45500 1.78602 0.93044 0.90044 0.92481 0.91616 0.90353 0.89913 0.91803 0.93093 0.87373 0.95045 0.92935 0.93079 0.95166 0.91847 0.91882 0.90631 0.88962 0.88449 0.90004 0.90855 0.74785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.17 37.16 0.34 -2.35 16 2 C -0.08 -1.09 4.58 -26.73 -0.12 -1.21 16 3 C -0.11 -1.62 0.43 -155.67 -0.07 -1.69 16 4 C 0.54 9.74 6.09 -10.99 -0.07 9.67 16 5 O -0.53 -10.90 13.70 5.56 0.08 -10.83 16 6 N -0.58 -10.04 2.39 -176.66 -0.42 -10.46 16 7 C 0.11 1.62 4.07 -5.91 -0.02 1.60 16 8 C -0.19 -3.74 5.34 -29.13 -0.16 -3.90 16 9 C 0.15 3.41 4.56 -5.23 -0.02 3.38 16 10 N -0.60 -14.93 2.13 -172.00 -0.37 -15.30 16 11 C -0.25 -7.51 9.56 -15.06 -0.14 -7.66 16 12 H 0.07 2.50 8.06 -52.49 -0.42 2.08 16 13 C 0.03 0.98 5.29 -17.43 -0.09 0.89 16 14 N -0.90 -29.06 13.97 55.49 0.78 -28.28 16 15 Si 0.88 23.20 25.23 -169.99 -4.29 18.91 16 16 H -0.29 -7.29 6.48 56.52 0.37 -6.93 16 17 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 18 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 19 C 0.13 2.77 6.85 -1.76 -0.01 2.76 16 20 C 0.10 1.77 5.22 -4.58 -0.02 1.75 16 21 C -0.13 -1.19 5.42 -25.11 -0.14 -1.33 16 22 C 0.10 0.75 7.31 -3.13 -0.02 0.72 16 23 N -0.74 -8.26 5.63 -59.21 -0.33 -8.59 16 24 C 0.52 8.46 3.82 -10.86 -0.04 8.42 16 25 O -0.47 -10.38 14.12 5.56 0.08 -10.30 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.66 5.85 -51.93 -0.30 1.36 16 28 H 0.06 1.04 6.75 -51.93 -0.35 0.69 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 31 H 0.08 1.07 2.45 -51.93 -0.13 0.94 16 32 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.11 2.59 4.56 -51.93 -0.24 2.35 16 35 H 0.03 0.62 7.59 -51.93 -0.39 0.22 16 36 H 0.05 1.32 2.83 -51.93 -0.15 1.17 16 37 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.48 7.97 -51.93 -0.41 1.07 16 40 H 0.06 0.93 7.73 -51.93 -0.40 0.53 16 41 H 0.08 1.24 7.45 -51.93 -0.39 0.85 16 42 H 0.09 0.82 5.95 -51.93 -0.31 0.52 16 43 H 0.10 0.65 7.90 -51.93 -0.41 0.24 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.41 4.13 8.96 -40.82 -0.37 3.76 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -37.78 332.87 -6.87 -44.65 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.81 Total: 4.16 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -0.59 Total: 11.04 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.35 Total: -62.64 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.15 Total: -21.13 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.29 Total: 18.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.78 -6.87 -44.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981376951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.866 kcal (2) G-P(sol) polarization free energy of solvation -37.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds