Wall clock time and date at job start Fri Apr 10 2020 18:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47215 * 2 1 4 4 C 1.50702 * 110.43261 * 63.33918 * 3 2 1 5 5 O 1.21281 * 119.99958 * 1.62669 * 4 3 2 6 6 N 1.34774 * 119.99701 * 181.62207 * 4 3 2 7 7 C 1.48212 * 119.97248 * 5.42480 * 6 4 3 8 8 C 1.47141 * 110.34411 * 102.46391 * 7 6 4 9 9 C 1.53803 * 111.83908 * 58.29629 * 8 7 6 10 10 N 1.43464 * 107.95950 * 281.67017 * 9 8 7 11 11 C 1.36941 * 118.93901 * 273.60560 * 10 9 8 12 12 H 1.08002 * 119.99919 * 142.53412 * 11 10 9 13 13 C 1.38813 * 119.99777 * 322.53940 * 11 10 9 14 14 N 1.31622 * 119.99634 * 157.55037 * 13 11 10 15 15 Si 1.86799 * 120.00282 * 337.54312 * 13 11 10 16 16 H 1.48500 * 109.47134 * 90.57661 * 15 13 11 17 17 H 1.48502 * 109.47036 * 210.57514 * 15 13 11 18 18 H 1.48500 * 109.46942 * 330.57284 * 15 13 11 19 19 C 1.48851 * 122.11890 * 93.63345 * 10 9 8 20 20 C 1.43625 * 119.96914 * 185.39737 * 6 4 3 21 21 C 1.54625 * 110.48689 * 185.88109 * 3 2 1 22 22 C 1.54471 * 101.76537 * 94.01284 * 21 3 2 23 23 N 1.46759 * 105.47579 * 25.41660 * 22 21 3 24 24 C 1.34423 * 111.29823 * 342.97997 * 23 22 21 25 25 O 1.21279 * 124.94255 * 180.44189 * 24 23 22 26 26 H 1.08996 * 109.47129 * 185.73351 * 1 2 3 27 27 H 1.08997 * 109.47240 * 305.73372 * 1 2 3 28 28 H 1.09001 * 109.46507 * 65.73744 * 1 2 3 29 29 H 1.09000 * 109.47404 * 239.99759 * 2 1 3 30 30 H 1.09002 * 109.46829 * 119.99684 * 2 1 3 31 31 H 1.09001 * 109.32274 * 342.19527 * 7 6 4 32 32 H 1.08997 * 109.32318 * 222.73494 * 7 6 4 33 33 H 1.09006 * 109.00473 * 178.90098 * 8 7 6 34 34 H 1.08990 * 109.00892 * 297.68848 * 8 7 6 35 35 H 1.09000 * 109.76347 * 41.28706 * 9 8 7 36 36 H 1.08997 * 109.75931 * 162.05263 * 9 8 7 37 37 H 0.96996 * 120.00137 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.48157 * 80.60323 * 19 10 9 39 39 H 1.09001 * 109.47877 * 200.62978 * 19 10 9 40 40 H 1.09006 * 108.87139 * 149.91066 * 20 6 4 41 41 H 1.08997 * 108.79248 * 31.42279 * 20 6 4 42 42 H 1.09007 * 110.97118 * 212.13637 * 21 3 2 43 43 H 1.09003 * 110.97067 * 335.89573 * 21 3 2 44 44 H 1.09003 * 110.24827 * 144.41846 * 22 21 3 45 45 H 1.09007 * 110.25064 * 266.41487 * 22 21 3 46 46 H 0.96998 * 124.35489 * 162.98428 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6180 2.1498 1.2621 5 8 0.9903 1.5527 2.1108 6 7 1.9382 3.4457 1.4475 7 6 2.5990 4.2079 0.3616 8 6 1.6266 5.0792 -0.3167 9 6 0.9628 6.0648 0.6598 10 7 -0.0460 5.3525 1.3898 11 6 -1.3013 5.2458 0.8531 12 1 -1.8643 4.3320 0.9737 13 6 -1.8501 6.3121 0.1540 14 7 -2.8140 6.1015 -0.7172 15 14 -1.2210 8.0459 0.4499 16 1 -0.1111 8.3373 -0.4926 17 1 -2.3235 9.0165 0.2316 18 1 -0.7284 8.1621 1.8460 19 6 0.2277 4.7261 2.7121 20 6 1.6383 4.0871 2.6971 21 6 3.5789 1.4724 -0.1484 22 6 3.7449 1.6358 -1.6755 23 7 2.5114 2.2838 -2.1364 24 6 1.5354 2.1854 -1.2173 25 8 0.4133 2.6274 -1.3456 26 1 -0.3633 -1.0225 0.1027 27 1 -0.3633 0.6002 0.8342 28 1 -0.3632 0.4223 -0.9369 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0245 3.5112 -0.3607 32 1 3.3974 4.8182 0.7835 33 1 2.1386 5.6429 -1.0967 34 1 0.8554 4.4608 -0.7757 35 1 1.7089 6.4583 1.3503 36 1 0.5064 6.8836 0.1036 37 1 -3.1977 6.8465 -1.2055 38 1 0.1815 5.4869 3.4913 39 1 -0.5180 3.9563 2.9109 40 1 2.3797 4.8648 2.8810 41 1 1.6988 3.3471 3.4950 42 1 4.0057 2.3227 0.3836 43 1 4.0221 0.5374 0.1943 44 1 4.6069 2.2655 -1.8960 45 1 3.8584 0.6606 -2.1491 46 1 2.4130 2.7261 -2.9940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981376951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:02 Heat of formation + Delta-G solvation = -38.892409 kcal Electronic energy + Delta-G solvation = -29314.558394 eV Core-core repulsion = 25626.015012 eV Total energy + Delta-G solvation = -3688.543381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.83018 -40.18070 -38.91433 -37.54002 -36.21647 -34.78832 -33.67669 -33.65125 -31.28563 -29.67275 -28.21647 -27.34626 -25.61028 -24.13803 -23.96737 -22.79207 -22.17612 -21.43676 -19.52061 -18.69849 -18.48561 -18.00476 -17.62496 -17.29184 -16.66840 -16.43835 -15.65679 -15.57273 -15.28559 -15.24326 -15.15843 -14.75659 -14.59705 -14.32332 -14.12867 -13.95283 -13.74870 -13.61912 -13.36944 -13.13095 -13.00108 -12.77078 -12.65305 -12.54328 -12.22672 -12.09267 -12.06967 -11.87156 -11.79005 -11.51437 -11.37791 -10.77713 -10.63998 -10.55125 -9.88822 -9.61266 -8.70365 -8.17137 -5.54309 1.24144 1.36780 1.42813 1.49161 1.62501 2.12047 2.40194 2.45329 3.06650 3.25830 3.35831 3.39521 3.57420 3.78583 3.94664 3.99735 4.15149 4.20241 4.31702 4.35525 4.40705 4.42962 4.48383 4.60761 4.67867 4.76385 4.78909 4.81394 4.86700 4.92505 4.99179 4.99406 5.03470 5.08880 5.12624 5.15125 5.39801 5.58587 5.80204 5.91750 5.97966 6.10711 6.14978 6.43140 7.05146 7.19485 7.34506 7.68297 8.02348 9.04625 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.006236 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.000898 B = 4489.330603 C = 4601.445223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.077 4.077 3 C -0.118 4.118 4 C 0.529 3.471 5 O -0.570 6.570 6 N -0.586 5.586 7 C 0.104 3.896 8 C -0.187 4.187 9 C 0.141 3.859 10 N -0.606 5.606 11 C -0.242 4.242 12 H 0.004 0.996 13 C -0.031 4.031 14 N -0.957 5.957 15 Si 0.964 3.036 16 H -0.264 1.264 17 H -0.311 1.311 18 H -0.259 1.259 19 C 0.125 3.875 20 C 0.108 3.892 21 C -0.125 4.125 22 C 0.101 3.899 23 N -0.727 5.727 24 C 0.518 3.482 25 O -0.546 6.546 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.260 0.740 38 H 0.050 0.950 39 H 0.019 0.981 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.131 0.869 44 H 0.122 0.878 45 H 0.103 0.897 46 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.360 -8.877 -1.026 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.115 4.115 3 C -0.125 4.125 4 C 0.317 3.683 5 O -0.450 6.450 6 N -0.316 5.316 7 C -0.017 4.017 8 C -0.227 4.227 9 C 0.016 3.984 10 N -0.331 5.331 11 C -0.373 4.373 12 H 0.021 0.979 13 C -0.226 4.226 14 N -0.602 5.602 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.240 1.240 18 H -0.183 1.183 19 C 0.000 4.000 20 C -0.017 4.017 21 C -0.162 4.162 22 C -0.022 4.022 23 N -0.384 5.384 24 C 0.303 3.697 25 O -0.423 6.423 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.149 0.851 44 H 0.140 0.860 45 H 0.121 0.879 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 24.404 -8.940 -0.601 25.997 hybrid contribution -1.577 1.108 -0.504 1.992 sum 22.826 -7.832 -1.105 24.158 Atomic orbital electron populations 1.21836 0.97601 1.01582 1.00519 1.21245 0.94703 0.91040 1.04505 1.21798 1.01226 0.98099 0.91411 1.20358 0.78058 0.82209 0.87662 1.90608 1.40131 1.67361 1.46860 1.47475 1.58913 1.09393 1.15802 1.21383 0.94765 0.95695 0.89808 1.21978 1.00372 1.00327 1.00041 1.20860 0.90642 0.93309 0.93596 1.43868 1.07087 1.64016 1.18080 1.18408 0.93465 0.95540 1.29889 0.97863 1.26151 0.96955 1.02241 0.97231 1.70091 1.31662 1.32209 1.26216 0.85636 0.76154 0.79514 0.79459 1.19105 1.23955 1.18337 1.22200 0.96218 0.95060 0.86535 1.21573 0.96215 0.97804 0.86089 1.23109 0.88347 1.07084 0.97661 1.22457 0.86515 1.00490 0.92707 1.46270 1.13574 1.58519 1.20021 1.20579 0.84690 0.78591 0.85842 1.90948 1.22067 1.48928 1.80322 0.91018 0.94859 0.95225 0.87914 0.89011 0.87337 0.87318 0.90662 0.92054 0.90827 0.95483 0.93143 0.93223 0.96220 0.87608 0.90052 0.88135 0.85091 0.86000 0.87923 0.74181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.64 9.17 71.98 0.66 -4.97 16 2 C -0.08 -1.96 4.58 30.60 0.14 -1.82 16 3 C -0.12 -3.16 0.43 -52.94 -0.02 -3.18 16 4 C 0.53 18.93 6.09 87.66 0.53 19.46 16 5 O -0.57 -24.61 13.70 -3.03 -0.04 -24.65 16 6 N -0.59 -19.26 2.39 -831.21 -1.98 -21.25 16 7 C 0.10 2.80 4.07 84.23 0.34 3.14 16 8 C -0.19 -7.00 5.34 29.04 0.15 -6.85 16 9 C 0.14 6.07 4.56 87.21 0.40 6.46 16 10 N -0.61 -30.90 2.13 -698.08 -1.49 -32.39 16 11 C -0.24 -15.57 9.56 84.03 0.80 -14.76 16 12 H 0.00 0.27 8.06 -2.91 -0.02 0.25 16 13 C -0.03 -1.97 5.29 84.86 0.45 -1.53 16 14 N -0.96 -65.92 13.97 21.65 0.30 -65.61 16 15 Si 0.96 49.37 25.23 68.60 1.73 51.11 16 16 H -0.26 -12.45 6.48 99.48 0.64 -11.80 16 17 H -0.31 -16.08 7.11 99.48 0.71 -15.37 16 18 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 19 C 0.12 5.45 6.85 86.56 0.59 6.05 16 20 C 0.11 3.53 5.22 87.55 0.46 3.99 16 21 C -0.12 -1.57 5.42 31.65 0.17 -1.40 16 22 C 0.10 0.84 7.31 86.83 0.63 1.48 16 23 N -0.73 -14.08 5.63 -459.82 -2.59 -16.67 16 24 C 0.52 16.57 3.82 87.90 0.34 16.91 16 25 O -0.55 -26.21 14.12 -3.03 -0.04 -26.26 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.03 1.49 5.85 -2.39 -0.01 1.47 16 28 H 0.03 1.18 6.75 -2.39 -0.02 1.16 16 29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 2.10 8.03 -2.39 -0.02 2.08 16 31 H 0.11 2.33 2.45 -2.39 -0.01 2.33 16 32 H 0.11 2.04 8.05 -2.39 -0.02 2.02 16 33 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.06 3.01 4.56 -2.39 -0.01 3.00 16 35 H 0.07 2.54 7.59 -2.39 -0.02 2.52 16 36 H 0.03 1.31 2.83 -2.39 -0.01 1.30 16 37 H 0.26 16.79 8.31 -92.71 -0.77 16.02 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.02 0.99 7.97 -2.39 -0.02 0.97 16 40 H 0.11 2.59 7.73 -2.38 -0.02 2.57 16 41 H 0.08 2.58 7.45 -2.39 -0.02 2.56 16 42 H 0.10 1.16 5.95 -2.38 -0.01 1.15 16 43 H 0.13 0.87 7.90 -2.39 -0.02 0.85 16 44 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 46 H 0.42 7.40 8.96 -92.71 -0.83 6.56 16 Total: -1.00 -97.71 332.87 1.65 -96.05 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.12 Total: 16.68 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 5.65 Total: 22.98 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -5.76 Total: -135.92 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.08 Total: -50.91 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.73 Total: 51.11 kcal Total: -97.71 1.65 -96.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981376951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.160 kcal (2) G-P(sol) polarization free energy of solvation -97.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds